CK932695

Overview
NameCK932695
Unique NameCK932695
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length526
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK932695 vs. ExPASy Swiss-Prot
Match: RS4X_MACFU (40S ribosomal protein S4, X isoform OS=Macaca fuscata fuscata GN=RPS4X PE=2 SV=3)

HSP 1 Score: 120.553 bits (301), Expect = 4.701e-27
Identity = 52/82 (63.41%), Postives = 67/82 (81.71%), Query Frame = 2 
Query:    5 KFXXGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 250
            KF  GN+ MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:  174 KFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255
[Close]
BLAST of CK932695 vs. ExPASy Swiss-Prot
Match: RS4X_HUMAN (40S ribosomal protein S4, X isoform OS=Homo sapiens GN=RPS4X PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 4.701e-27
Identity = 52/82 (63.41%), Postives = 67/82 (81.71%), Query Frame = 2 
Query:    5 KFXXGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 250
            KF  GN+ MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:  174 KFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255
[Close]
BLAST of CK932695 vs. ExPASy Swiss-Prot
Match: RS4X_FELCA (40S ribosomal protein S4, X isoform OS=Felis catus GN=RPS4X PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 4.701e-27
Identity = 52/82 (63.41%), Postives = 67/82 (81.71%), Query Frame = 2 
Query:    5 KFXXGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 250
            KF  GN+ MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:  174 KFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255
[Close]
BLAST of CK932695 vs. ExPASy Swiss-Prot
Match: RS4X_CERAE (40S ribosomal protein S4, X isoform OS=Cercopithecus aethiops GN=RPS4X PE=2 SV=3)

HSP 1 Score: 120.553 bits (301), Expect = 4.701e-27
Identity = 52/82 (63.41%), Postives = 67/82 (81.71%), Query Frame = 2 
Query:    5 KFXXGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 250
            KF  GN+ MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:  174 KFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255
[Close]
BLAST of CK932695 vs. ExPASy Swiss-Prot
Match: RS4_CARGR (40S ribosomal protein S4 OS=Carabus granulatus GN=RpS4 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 5.198e-26
Identity = 54/82 (65.85%), Postives = 65/82 (79.27%), Query Frame = 2 
Query:    5 KFXXGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 250
            KF  GN+ M+TGGRN GRVG + NRE+H GSF+ +HI+D+ GH FA RL NVF IGKGSK +VSLP+GKG+KLSI EE  KR
Sbjct:  174 KFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHTFANRLNNVFIIGKGSKAYVSLPRGKGVKLSIAEERDKR 255
[Close]
BLAST of CK932695 vs. ExPASy Swiss-Prot
Match: RS4_ICTPU (40S ribosomal protein S4 OS=Ictalurus punctatus GN=rps4 PE=2 SV=3)

HSP 1 Score: 116.701 bits (291), Expect = 6.789e-26
Identity = 50/82 (60.98%), Postives = 66/82 (80.49%), Query Frame = 2 
Query:    5 KFXXGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 250
            KF  GN+ MVTGG N GR+G+I NRE+H GSF+ +H++D+ G+ FATRL N+F IGKG+K WVS+P+GKGI+L+I EE  KR
Sbjct:  174 KFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDSTGNSFATRLSNIFVIGKGNKAWVSIPRGKGIRLTIAEERDKR 255
[Close]
BLAST of CK932695 vs. ExPASy Swiss-Prot
Match: RS4Y1_MACFU (40S ribosomal protein S4, Y isoform 1 OS=Macaca fuscata fuscata GN=RPS4Y1 PE=2 SV=3)

HSP 1 Score: 116.701 bits (291), Expect = 6.789e-26
Identity = 50/82 (60.98%), Postives = 65/82 (79.27%), Query Frame = 2 
Query:    5 KFXXGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 250
            KF  GN+ MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATR+ N+F IG G+KPW+SLP+GKGI+L+I EE  KR
Sbjct:  174 KFDTGNVCMVIGGANLGRVGVITNRERHPGSFDVVHVKDASGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIAEERDKR 255
[Close]
BLAST of CK932695 vs. ExPASy Swiss-Prot
Match: RS4Y1_PONPY (40S ribosomal protein S4, Y isoform 1 OS=Pongo pygmaeus GN=RPS4Y1 PE=3 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 8.867e-26
Identity = 50/82 (60.98%), Postives = 65/82 (79.27%), Query Frame = 2 
Query:    5 KFXXGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 250
            KF  GN+ MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATR+ N+F IG G+KPW+SLP+GKGI+L+I EE  KR
Sbjct:  174 KFDTGNVCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIAEERDKR 255
[Close]
BLAST of CK932695 vs. ExPASy Swiss-Prot
Match: RS4Y1_HUMAN (40S ribosomal protein S4, Y isoform 1 OS=Homo sapiens GN=RPS4Y1 PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 8.867e-26
Identity = 50/82 (60.98%), Postives = 65/82 (79.27%), Query Frame = 2 
Query:    5 KFXXGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 250
            KF  GN+ MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATRL N+F IG G+KPW+SLP+GKGI+L++ EE  KR
Sbjct:  174 KFDTGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPRGKGIRLTVAEERDKR 255
[Close]
BLAST of CK932695 vs. ExPASy Swiss-Prot
Match: RS4Y1_GORGO (40S ribosomal protein S4, Y isoform 1 OS=Gorilla gorilla gorilla GN=RPS4Y1 PE=3 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 1.512e-25
Identity = 49/82 (59.76%), Postives = 65/82 (79.27%), Query Frame = 2 
Query:    5 KFXXGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 250
            KF  GN+ MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATR+ N+F IG G+KPW+SLP+GKGI+L++ EE  KR
Sbjct:  174 KFDTGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTVAEERDKR 255
The following BLAST results are available for this feature:
BLAST of CK932695 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
RS4X_MACFU4.701e-2763.4140S ribosomal protein S4, X isoform OS=Macaca fusc... [more]
RS4X_HUMAN4.701e-2763.4140S ribosomal protein S4, X isoform OS=Homo sapien... [more]
RS4X_FELCA4.701e-2763.4140S ribosomal protein S4, X isoform OS=Felis catus... [more]
RS4X_CERAE4.701e-2763.4140S ribosomal protein S4, X isoform OS=Cercopithec... [more]
RS4_CARGR5.198e-2665.8540S ribosomal protein S4 OS=Carabus granulatus GN=... [more]
RS4_ICTPU6.789e-2660.9840S ribosomal protein S4 OS=Ictalurus punctatus GN... [more]
RS4Y1_MACFU6.789e-2660.9840S ribosomal protein S4, Y isoform 1 OS=Macaca fu... [more]
RS4Y1_PONPY8.867e-2660.9840S ribosomal protein S4, Y isoform 1 OS=Pongo pyg... [more]
RS4Y1_HUMAN8.867e-2660.9840S ribosomal protein S4, Y isoform 1 OS=Homo sapi... [more]
RS4Y1_GORGO1.512e-2559.7640S ribosomal protein S4, Y isoform 1 OS=Gorilla g... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004530_F11 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IVF_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932695 ID=CK932695; Name=CK932695; organism=Citrus sinensis; type=EST; length=526bp
GGGCAAGTTTGNNNTTGGGAATATTGTCATGGTCACTGGGGGTAGAAACA
GAGGTCGGGTTGGAATCATCAAGAACAGGGAAAAGCATAAGGGAAGTTTT
GAGACCATCCATATTCAAGATGCCCTTGGTCATGAGTTTGCAACTCGTCT
AGGCAATGTGTTCACCATCGGGAAGGGTTCAAAACCATGGGTGTCACTTC
CTAAGGGCAAGGGTATTAAGTTGTCCATCATTGAGGAAGCTAGGAAGAGA
CAGGCTGCCCAGGCTGCTGCTTAAGCTTTTACAATGAATTTGGATACATT
TTGCTGCTTTGTTTTTTCTTGTTGAATTAGAGCTGATTGGCACTCTCTAA
AGCTGAAGTAGGACGGATGCAAAAATGAATCTTTATTTTTATTTTATCAG
CACAATTTTGAACCTGCTTTGTCCTTTTTTATTTTAGCTACTATTTGGTG
GATGTTATTTTCAACTATTTAATCTAAGTTCATGTATCTCTTTATCAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAA
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