CK932703

Overview
NameCK932703
Unique NameCK932703
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length583
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2124 contig Csv1_Contig2124:91..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932703 vs. ExPASy Swiss-Prot
Match: RBX1_YEAST (RING-box protein HRT1 OS=Saccharomyces cerevisiae GN=HRT1 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.868e-34
Identity = 57/87 (65.52%), Postives = 66/87 (75.86%), Query Frame = 3
Query:  108 RFEIKKWSAVALWAWDIVVDNCAICRNHIRDLCIECQANQASATNEECTVAWGVCNHAFHFHCIGRWLKTRQVCPLDNSEWEFQKYG 368
            RFEIKKW+AVA W+WDI VDNCAICRNHI + CIECQ    + T+ EC  AWGVCNHAFH HCI +W+KTR  CPLDN  W+  + G
Sbjct:   34 RFEIKKWTAVAFWSWDIAVDNCAICRNHIMEPCIECQPKAMTDTDNECVAAWGVCNHAFHLHCINKWIKTRDACPLDNQPWQLARCG 120          
BLAST of CK932703 vs. ExPASy Swiss-Prot
Match: RBX2_MOUSE (RING-box protein 2 OS=Mus musculus GN=Rnf7 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.250e-21
Identity = 40/86 (46.51%), Postives = 53/86 (61.63%), Query Frame = 3
Query:  111 FEIKKWSAVALWAWDIVVDNCAICRNHIRDLCIECQANQASATNEECTVAWGVCNHAFHFHCIGRWLKTRQVCPLDNSEWEFQKYG 368
            F +KKW+AVA+W+WD+  D CAICR  + D C+ CQA       E+C V WG CNH+FH  C+  W+K    CPL   +W  Q+ G
Sbjct:   30 FSLKKWNAVAMWSWDVECDTCAICRVQVMDACLRCQAEN---KQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIG 112          
BLAST of CK932703 vs. ExPASy Swiss-Prot
Match: RBX2_HUMAN (RING-box protein 2 OS=Homo sapiens GN=RNF7 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.250e-21
Identity = 40/86 (46.51%), Postives = 53/86 (61.63%), Query Frame = 3
Query:  111 FEIKKWSAVALWAWDIVVDNCAICRNHIRDLCIECQANQASATNEECTVAWGVCNHAFHFHCIGRWLKTRQVCPLDNSEWEFQKYG 368
            F +KKW+AVA+W+WD+  D CAICR  + D C+ CQA       E+C V WG CNH+FH  C+  W+K    CPL   +W  Q+ G
Sbjct:   30 FSLKKWNAVAMWSWDVECDTCAICRVQVMDACLRCQAEN---KQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIG 112          
BLAST of CK932703 vs. ExPASy Swiss-Prot
Match: APC11_DICDI (Anaphase-promoting complex subunit 11 OS=Dictyostelium discoideum GN=anapc11 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.748e-15
Identity = 33/80 (41.25%), Postives = 45/80 (56.25%), Query Frame = 3
Query:  126 WSAVALWAWDIVVDNCAICRNHIRDLCIECQANQASATNEECTVAWGVCNHAFHFHCIGRWLKTR--QVCPLDNSEWEFQ 359
            W+ V+ W WD+  + C ICR      C++C+        ++C   WGVCNHAFH HCI +WL     Q CP+  SEW F+
Sbjct:    9 WNTVSAWHWDVNEECCGICRMAFDGCCVDCKI-----PGDDCPPVWGVCNHAFHMHCILKWLNANELQQCPMCRSEWRFK 83          
BLAST of CK932703 vs. ExPASy Swiss-Prot
Match: APC11_BOVIN (Anaphase-promoting complex subunit 11 OS=Bos taurus GN=ANAPC11 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.283e-15
Identity = 34/88 (38.64%), Postives = 49/88 (55.68%), Query Frame = 3
Query:  108 RFEIKKWSAVALWAWDIVVDNCAICRNHIRDLCIECQANQASATNEECTVAWGVCNHAFHFHCIGRWLKTRQV---CPLDNSEWEFQK 362
            R +IK W+ VA W W    +NC ICR      C +C+        ++C + WG C+H FH HCI +WL  +QV   CP+   EW+F++
Sbjct:    2 RVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKV-----PGDDCPLVWGQCSHCFHMHCILKWLNAQQVQQHCPMCRQEWKFKE 84          
BLAST of CK932703 vs. ExPASy Swiss-Prot
Match: APC11_MOUSE (Anaphase-promoting complex subunit 11 OS=Mus musculus GN=Anapc11 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.087e-15
Identity = 33/88 (37.50%), Postives = 49/88 (55.68%), Query Frame = 3
Query:  108 RFEIKKWSAVALWAWDIVVDNCAICRNHIRDLCIECQANQASATNEECTVAWGVCNHAFHFHCIGRWLKTRQV---CPLDNSEWEFQK 362
            + +IK W+ VA W W    +NC ICR      C +C+        ++C + WG C+H FH HCI +WL  +QV   CP+   EW+F++
Sbjct:    2 KVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKV-----PGDDCPLVWGQCSHCFHMHCILKWLNAQQVQQHCPMCRQEWKFKE 84          
BLAST of CK932703 vs. ExPASy Swiss-Prot
Match: APC11_PONAB (Anaphase-promoting complex subunit 11 OS=Pongo abelii GN=ANAPC11 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.644e-15
Identity = 33/88 (37.50%), Postives = 49/88 (55.68%), Query Frame = 3
Query:  108 RFEIKKWSAVALWAWDIVVDNCAICRNHIRDLCIECQANQASATNEECTVAWGVCNHAFHFHCIGRWLKTRQV---CPLDNSEWEFQK 362
            + +IK W+ VA W W    +NC ICR      C +C+        ++C + WG C+H FH HCI +WL  +QV   CP+   EW+F++
Sbjct:    2 KVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKV-----PGDDCPLVWGQCSHCFHMHCILKWLHAQQVQQHCPMCRQEWKFKE 84          
BLAST of CK932703 vs. ExPASy Swiss-Prot
Match: APC11_HUMAN (Anaphase-promoting complex subunit 11 OS=Homo sapiens GN=ANAPC11 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.644e-15
Identity = 33/88 (37.50%), Postives = 49/88 (55.68%), Query Frame = 3
Query:  108 RFEIKKWSAVALWAWDIVVDNCAICRNHIRDLCIECQANQASATNEECTVAWGVCNHAFHFHCIGRWLKTRQV---CPLDNSEWEFQK 362
            + +IK W+ VA W W    +NC ICR      C +C+        ++C + WG C+H FH HCI +WL  +QV   CP+   EW+F++
Sbjct:    2 KVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKV-----PGDDCPLVWGQCSHCFHMHCILKWLHAQQVQQHCPMCRQEWKFKE 84          
The following BLAST results are available for this feature:
BLAST of CK932703 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RBX1_YEAST2.868e-3465.52RING-box protein HRT1 OS=Saccharomyces cerevisiae ... [more]
RBX2_MOUSE1.250e-2146.51RING-box protein 2 OS=Mus musculus GN=Rnf7 PE=2 SV... [more]
RBX2_HUMAN1.250e-2146.51RING-box protein 2 OS=Homo sapiens GN=RNF7 PE=1 SV... [more]
APC11_DICDI1.748e-1541.25Anaphase-promoting complex subunit 11 OS=Dictyoste... [more]
APC11_BOVIN2.283e-1538.64Anaphase-promoting complex subunit 11 OS=Bos tauru... [more]
APC11_MOUSE5.087e-1537.50Anaphase-promoting complex subunit 11 OS=Mus muscu... [more]
APC11_PONAB6.644e-1537.50Anaphase-promoting complex subunit 11 OS=Pongo abe... [more]
APC11_HUMAN6.644e-1537.50Anaphase-promoting complex subunit 11 OS=Homo sapi... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004530_E11 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IVF_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932703 ID=CK932703; Name=CK932703; organism=Citrus sinensis; type=EST; length=583bp
GGGGGATCGAGAAAAAAATGGCGACCTTGGACTCATACGTACCGATGGTT
CCAGTCGGAGAGGCATCAAGCAGTGCAGGCCCTTCATCTTCCTCCAAGAA
GCCTAAACGTTTCGAGATCAAAAAGTGGAGCGCCGTCGCCCTCTGGGCTT
GGGATATTGTTGTCGATAATTGTGCGATTTGCAGGAACCACATCAGGGAT
CTCTGCATCGAGTGCCAGGCTAACCAAGCTAGCGCTACAAACGAGGAATG
CACTGTAGCTTGGGGGGTTTGCAACCATGCATTTCACTTTCACTGCATCG
GTCGATGGCTGAAGACTCGTCAAGTTTGTCCATTGGATAACAGTGAGTGG
GAGTTCCAGAAGTATGGTCACTACAGCCTTTGAGCCAGTTGAGTTTTGGA
TTCTGTCTGCTATGTATTGCAGATTTCAAGTAGATATTATGGAAGACCCT
GGACTTTCTGTCAATTCTATTTGATGCTCTTTGTTATCTAAAATTCAGTT
GGTTATGACTTGGATTCTAAATCCTATATATGTTTGTGAAAATTAAGCCA
TAATTTCTGTTTAACTGAGCCCACTTTTTCTTG
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