CK932706

Overview
NameCK932706
Unique NameCK932706
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932706 vs. ExPASy Swiss-Prot
Match: TBB_EPITY (Tubulin beta chain OS=Epichloe typhina GN=TUBB PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 3.128e-51
Identity = 103/252 (40.87%), Postives = 149/252 (59.13%), Query Frame = 3
Query:  108 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDV 863
            MRE + +  GQ G Q+G A W+    EHG+  +G       +    +  + +F+E    K+VPRAV VDLEP  +D VR G + QLF P+  + G+  A NN+A+GHYT G E+VD  LD +R+ A+ C  LQGF + +++                  ++  +    F+V PSP+VS +VVEPYN+ LS H L+E++D    +DNEA+YDIC R+L +  P+Y +LN LVS V+S +T  LRF G LN D+
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQTISGEHGLDSNGVYNGTSELQL--ERMSVYFNEASGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQITHSLGGGTGAGMGTLLISKIREEFPDRMMATFSVVPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICMRTLKLSNPSYGDLNYLVSAVMSGVTTCLRFPGQLNSDL 250          
BLAST of CK932706 vs. ExPASy Swiss-Prot
Match: TBB_COCHE (Tubulin beta chain OS=Cochliobolus heterostrophus GN=TUB1 PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 3.128e-51
Identity = 105/252 (41.67%), Postives = 149/252 (59.13%), Query Frame = 3
Query:  108 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDV 863
            MRE + +  GQ G Q+G A W+    EHG+  DG    + T     +  N +F+E    K VPRAV VDLEP  +D VR G + QLF P+  + G+  A NN+A+GHYT G E+VD  LD +R+ A+ C  LQGF + +++                  ++  +    ++V PSP+VS +VVEPYN+ LS H L+E++D    +DNEA+YDIC R+L +  P+Y +LN LVS V+S +T  LRF G LN D+
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQTISGEHGL--DGSGVYNGTSDLQLERMNVYFNEASNNKFVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQITHSLGGGTGAGMGTLLISKIREEFPDRMMATYSVVPSPKVSDTVVEPYNATLSIHQLVENSDETFCIDNEALYDICMRTLKLNNPSYGDLNHLVSAVMSGVTTCLRFPGQLNSDL 250          
BLAST of CK932706 vs. ExPASy Swiss-Prot
Match: TBB_ACRCO (Tubulin beta chain OS=Acremonium coenophialum GN=TUB2 PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 3.128e-51
Identity = 103/252 (40.87%), Postives = 149/252 (59.13%), Query Frame = 3
Query:  108 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDV 863
            MRE + +  GQ G Q+G A W+    EHG+  +G       +    +  + +F+E    K+VPRAV VDLEP  +D VR G + QLF P+  + G+  A NN+A+GHYT G E+VD  LD +R+ A+ C  LQGF + +++                  ++  +    F+V PSP+VS +VVEPYN+ LS H L+E++D    +DNEA+YDIC R+L +  P+Y +LN LVS V+S +T  LRF G LN D+
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQTISGEHGLDSNGVYNGTSELQL--ERMSVYFNEASGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQITHSLGGGTGAGMGTLLISKIREEFPDRMMATFSVVPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICMRTLKLSNPSYGDLNYLVSAVMSGVTTCLRFPGQLNSDL 250          
BLAST of CK932706 vs. ExPASy Swiss-Prot
Match: TBB3_DROME (Tubulin beta-3 chain OS=Drosophila melanogaster GN=betaTub60D PE=1 SV=2)

HSP 1 Score: 202.216 bits (513), Expect = 3.128e-51
Identity = 105/258 (40.70%), Postives = 153/258 (59.30%), Query Frame = 3
Query:  108 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGA------GKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDV 863
            MRE +++  GQ G Q+G   WE+   EHGI  +G    D  +    +  + +++E  A      GK+VPRA+ +DLEP  ++ VR+G Y QLF P+  + G+  A NN+A+GHYT G E+VD  LD +RK  +NC  LQGF + +++                  +Y  +    ++V PSP+VS +VVEPYN+ LS H L+E+TD    +DNEA+YDIC R+L +  P+Y +LN LVS  +S +T  LRF G LN D+
Sbjct:    1 MREIVNLQAGQCGNQIGAKFWEIISEEHGIDSNGIYVGDSDLQL--ERVSVYYNEASAVTRSSGGKYVPRAILLDLEPGTMESVRSGPYGQLFRPDNFVYGQSGAGNNWAKGHYTEGAELVDNVLDVVRKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKVSNPSYGDLNHLVSLTMSGVTTCLRFPGQLNADL 256          
BLAST of CK932706 vs. ExPASy Swiss-Prot
Match: TBB2_COLGR (Tubulin beta-2 chain OS=Colletotrichum graminicola GN=TUB2 PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 3.128e-51
Identity = 103/252 (40.87%), Postives = 149/252 (59.13%), Query Frame = 3
Query:  108 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDV 863
            MRE + +  GQ G Q+G A W+    EHG+  +G       +    +  + +F+E    K+VPRAV VDLEP  +D VR G + QLF P+  + G+  A NN+A+GHYT G E+VD  LD +R+ A+ C  LQGF + +++                  ++  +    F+V PSP+VS +VVEPYN+ LS H L+E++D    +DNEA+YDIC R+L +  P+Y +LN LVS V+S +T  LRF G LN D+
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQNISGEHGLDSNGVYNGTSELQL--ERMSVYFNEASGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQITHSLGGGTGAGMGTLLISKIREEFPDRMMATFSVVPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICMRTLKLSNPSYGDLNHLVSAVMSGVTTCLRFPGQLNSDL 250          
BLAST of CK932706 vs. ExPASy Swiss-Prot
Match: TBB2_COLGL (Tubulin beta-2 chain OS=Colletotrichum gloeosporioides GN=TUB2 PE=3 SV=2)

HSP 1 Score: 202.216 bits (513), Expect = 3.128e-51
Identity = 103/252 (40.87%), Postives = 149/252 (59.13%), Query Frame = 3
Query:  108 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDV 863
            MRE + +  GQ G Q+G A W+    EHG+  +G       +    +  + +F+E    K+VPRAV VDLEP  +D VR G + QLF P+  + G+  A NN+A+GHYT G E+VD  LD +R+ A+ C  LQGF + +++                  ++  +    F+V PSP+VS +VVEPYN+ LS H L+E++D    +DNEA+YDIC R+L +  P+Y +LN LVS V+S +T  LRF G LN D+
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQNISGEHGLDSNGVYNGTSELQL--ERMSVYFNEASGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQITHSLGGGTGAGMGTLLISKIREEFPDRMMATFSVVPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICMRTLKLSNPSYGDLNHLVSAVMSGVTTCLRFPGQLNSDL 250          
BLAST of CK932706 vs. ExPASy Swiss-Prot
Match: TBB1_SUIBO (Tubulin beta-1 chain OS=Suillus bovinus GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 3.128e-51
Identity = 107/252 (42.46%), Postives = 149/252 (59.13%), Query Frame = 3
Query:  108 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDV 863
            MRE + I  GQ G Q+G   WE+   EHGI+ DG       +    +  + +++E G+ K+VPRAV VDLEP  +D VR+G    LF P+  I G+  A NN+A+GHYT G E+VD  LD +RK A+    LQGF + +++                  +Y  +    ++V PSP VS +VVEPYN+ LS H L+E++D    +DNEA+YDIC R+L +  PTY +LN LVS V+S +T  LRF G LN D+
Sbjct:    1 MREIVHIQTGQCGNQIGAKFWEVVSDEHGIERDGLYKGTNDMQL--ERISVYYNEIGSNKYVPRAVLVDLEPGTMDSVRSGPLGGLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAEGTDCLQGFQITHSLGGGTGAGMGTLLMSKIREEYPDRMMCTYSVVPSPAVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLSTPTYGDLNHLVSFVMSGITTCLRFPGQLNSDL 250          
BLAST of CK932706 vs. ExPASy Swiss-Prot
Match: TBB_METAN (Tubulin beta chain OS=Metarhizium anisopliae PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 4.085e-51
Identity = 103/252 (40.87%), Postives = 149/252 (59.13%), Query Frame = 3
Query:  108 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDV 863
            MRE + +  GQ G Q+G A W+    EHG+  +G       +    +  + +F+E    K+VPRAV VDLEP  +D VR G + QLF P+  + G+  A NN+A+GHYT G E+VD  LD +R+ A+ C  LQGF + +++                  ++  +    F+V PSP+VS +VVEPYN+ LS H L+E++D    +DNEA+YDIC R+L +  P+Y +LN LVS V+S +T  LRF G LN D+
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQTISGEHGLDSNGVYNGTSELQL--ERMSVYFNEASGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDNVLDVVRREAEGCDCLQGFQITHSLGGGTGAGMGTLLISKIREEFPDRMMATFSVVPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICMRTLKLSNPSYGDLNYLVSAVMSGVTTCLRFPGQLNSDL 250          
BLAST of CK932706 vs. ExPASy Swiss-Prot
Match: TBB_GIBFU (Tubulin beta chain OS=Gibberella fujikuroi GN=TUB2 PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 4.085e-51
Identity = 103/252 (40.87%), Postives = 149/252 (59.13%), Query Frame = 3
Query:  108 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDV 863
            MRE + +  GQ G Q+G A W+    EHG+  +G       +    +  + +F+E    K+VPRAV VDLEP  +D VR G + QLF P+  + G+  A NN+A+GHYT G E+VD  LD +R+ A+ C  LQGF + +++                  ++  +    F+V PSP+VS +VVEPYN+ LS H L+E++D    +DNEA+YDIC R+L +  P+Y +LN LVS V+S +T  LRF G LN D+
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQTISGEHGLDSNGVYNGTSELQL--ERMSVYFNERSGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQITHSLGGGTGAGMGTLLISKIREEFPDRMMATFSVVPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICMRTLKLSNPSYGDLNYLVSAVMSGVTTCLRFPGQLNSDL 250          
BLAST of CK932706 vs. ExPASy Swiss-Prot
Match: TBB_ACHKL (Tubulin beta chain OS=Achlya klebsiana PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 4.085e-51
Identity = 104/249 (41.77%), Postives = 147/249 (59.04%), Query Frame = 3
Query:  108 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALN 854
            MRE + I  GQ G Q+G   WE+   EHG+ P G    D  +    +  N +++E   G +VPRA+ +DLEP  +D VR G Y QLF P+  + G+  A NN+A+GHYT G E++D  LD +RK A++C  LQGF + +++                  +Y  +    ++V PSP+VS +VVEPYN+ LS H L+E+ D  + LDNEA+YDIC R+L +  PTY +LN LV   +S +T  LRF G LN
Sbjct:    1 MRELVHIQGGQCGNQIGAKFWEVISDEHGVDPTGSYHGDSDLQL--ERINVYYNEA-TGTYVPRAILMDLEPGTMDSVRAGPYGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKIREEYPDRIMCTYSVCPSPKVSDTVVEPYNATLSVHQLVENADEVMCLDNEALYDICFRTLKLTNPTYGDLNHLVCAAMSGITTLLRFPGQLN 246          
The following BLAST results are available for this feature:
BLAST of CK932706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 424
Match NameE-valueIdentityDescription
TBB_EPITY3.128e-5140.87Tubulin beta chain OS=Epichloe typhina GN=TUBB PE=... [more]
TBB_COCHE3.128e-5141.67Tubulin beta chain OS=Cochliobolus heterostrophus ... [more]
TBB_ACRCO3.128e-5140.87Tubulin beta chain OS=Acremonium coenophialum GN=T... [more]
TBB3_DROME3.128e-5140.70Tubulin beta-3 chain OS=Drosophila melanogaster GN... [more]
TBB2_COLGR3.128e-5140.87Tubulin beta-2 chain OS=Colletotrichum graminicola... [more]
TBB2_COLGL3.128e-5140.87Tubulin beta-2 chain OS=Colletotrichum gloeosporio... [more]
TBB1_SUIBO3.128e-5142.46Tubulin beta-1 chain OS=Suillus bovinus GN=TUBB1 P... [more]
TBB_METAN4.085e-5140.87Tubulin beta chain OS=Metarhizium anisopliae PE=3 ... [more]
TBB_GIBFU4.085e-5140.87Tubulin beta chain OS=Gibberella fujikuroi GN=TUB2... [more]
TBB_ACHKL4.085e-5141.77Tubulin beta chain OS=Achlya klebsiana PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCGF1004530_F02 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IVF_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932706 ID=CK932706; Name=CK932706; organism=Citrus sinensis; type=EST; length=869bp
GCGGGATCCCCAATCCATCCAATTTCACANNNAGGCGTCTTAATAAACGC
CTTCGTTTAGATTCAATTACTTTACGTCGTCGTTTTTTCTTCTCTTAATC
TGCGAAAATGAGAGAGTGCATTTCAATCCATATCGGTCAGGCCGGTATCC
AGGTCGGAAATGCCTGCTGGGAACTCTACTGCCTCGAGCACGGCATTCAG
CCTGATGGCCAAATGCCAAGTGATAAGACAGTCGGAGGTGGCGACGATGC
TTTCAACACCTTTTTCAGTGAAACTGGTGCAGGGAAGCACGTGCCTCGTG
CTGTCTTTGTTGATCTTGAGCCCACTGTCATTGATGAAGTGAGGACCGGA
ACTTACCGCCAGCTCTTCCACCCTGAGCAGCTCATCAGTGGCAAGGAAGA
CGCTGCCAACAACTTCGCCCGTGGCCACTATACCATTGGTAAGGAGATTG
TTGATCTCTGCCTTGACCGCATCAGGAAGCTGGCTGATAACTGCACTGGT
CTCCAGGGATTCCTTGTTTTCAATGCTGTTGGTGGAGGAACTGGCTCTGG
TCTTGGGTCTCTTCTTCTGGAGAGGTTGTCTGTTGACTATGGAAAGAAGT
CAAAGTTGGGCTTCACTGTCTACCCATCTCCTCAGGTCTCCACTTCTGTT
GTTGAGCCTTACAACAGTGTCCTCTCAACCCACTCCCTGTTGGAGCATAC
TGATGTGGCTGTTCTTCTCGACAATGAGGCCATTTATGACATCTGCAGGC
GCTCCCTTGACATTGAACGTCCTACCTATACTAACCTCAATAGACTTGTT
TCTCAGGTCATTTCTTCATTGACTGCCTCACTGAGGTTTGATGGTGCTTT
GAATGTGGATGTGACTGAA
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