CK932706

Overview
NameCK932706
Unique NameCK932706
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932706 vs. ExPASy Swiss-Prot
Match: TBG_SCHPO (Tubulin gamma chain OS=Schizosaccharomyces pombe GN=tug1 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.666e-36
Identity = 90/254 (35.43%), Postives = 142/254 (55.91%), Query Frame = 3
Query:  111 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKED--AANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQ-VSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDV 863
            RE I++  GQ G Q+G+  W+  CLEHGI PDG + S  T G   D  + FF ++   +++PRA+ +DLEP V++ + + TY  L++PE ++  K    A NN+A G Y+  + I +  +D I + AD    L+GF + +++                   Y KK    ++V+P+ Q VS  VV+PYNS+L+   L  + D  V+LDN A+  I    L  + PT+   N+LVS V+S+ T +LR+ G +N D+
Sbjct:    3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGV--DRKDVFFYQSDDTRYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVSDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADRLHTQNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDL 253          
BLAST of CK932706 vs. ExPASy Swiss-Prot
Match: TBG_COPC7 (Tubulin gamma chain OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=TUB4 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.712e-36
Identity = 84/253 (33.20%), Postives = 139/253 (54.94%), Query Frame = 3
Query:  111 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKED--AANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDV 863
            RE +++ +GQ G Q+G   W+  C EHGI  +G +    T GG  D  + FF +     ++PRA+ VDLEP VI+ +    Y  L++PE +   K+   A NN+A+G Y+ G+ I +  ++ I + A+    L+GF+V +++                   + KK    ++V+P+ Q    VV+PYNS+L+   L+ H D  V+LDN A+  I    L ++ P++   N+LVS VI++ T +LR+ G +N D+
Sbjct:    3 REIVTVQLGQCGNQMGAVYWQRLCAEHGISSEGILEEWATEGG--DRKDVFFYQADDEHYIPRAILVDLEPRVINNILASPYANLYNPENIFVSKDGGGAGNNWAQG-YSAGERIYEDIMEMIDREAEGSDSLEGFMVMHSIAGGTGSGLGSFLLERLNDKFPKKLIQTYSVFPNAQEGDVVVQPYNSLLALKRLVNHADSVVVLDNGALARISADRLHVQTPSFDQTNQLVSTVIAASTQTLRYPGYMNNDL 252          
BLAST of CK932706 vs. ExPASy Swiss-Prot
Match: TBG_NEUCR (Tubulin gamma chain OS=Neurospora crassa GN=tub-4 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 8.269e-36
Identity = 83/254 (32.68%), Postives = 141/254 (55.51%), Query Frame = 3
Query:  111 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKED--AANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYP-SPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDV 863
            RE I+I  GQ G  +G+  W+  CLEHGI  DG +    T GG  D  + FF ++   +++PR++ +DLEP VI+ ++TG YR +++PE    GK    A NN+  G+ T G+++ +  ++ I + AD    L+GF++ +++                   + KK    ++V+P +      VV PYNS+L+   L ++ D  V+LDN A+  I    L ++ P++   N+LVS V+S+ T +LR+ G ++ D+
Sbjct:    3 REIITIQAGQCGNSIGSQFWQQLCLEHGISQDGTIEDFATEGG--DRKDVFFYQSDDTRYIPRSILIDLEPRVINTIQTGPYRNIYNPENFYVGKSGLGAGNNWGDGYQT-GEQVHEEIMEMIEREADGSDSLEGFMMLHSIAGGTGSGLGSFLLERLNDRFPKKIIQTYSVFPDTTSAGDVVVHPYNSLLAMRRLTQNADSVVVLDNGALSHIAADRLHVQEPSFQQTNQLVSTVMSASTTTLRYPGYMHNDL 253          
BLAST of CK932706 vs. ExPASy Swiss-Prot
Match: TBG2_ORYSJ (Tubulin gamma-2 chain OS=Oryza sativa subsp. japonica GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 8.269e-36
Identity = 89/254 (35.04%), Postives = 139/254 (54.72%), Query Frame = 3
Query:  111 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKED--AANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSP-QVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDV 863
            RE I+I +GQ G Q+G   W+  CLEHGI  DG +    T GG  D  + FF +     ++PRA+ VDLEP VI+ ++   YR L++ E +   +    A NN+A G++  G+++VD  +D I + AD    L+GF++ +++                   Y KK    ++V+P+  + S  VV+PYNS+L+   L  + D  V+LDN A+  I    L +  PT+   N LVS V+S+ T +LR+ G +N D+
Sbjct:    3 REIITIQVGQCGNQIGMEFWKQLCLEHGIGKDGLLEDFATQGG--DRKDVFFYQADDQHYIPRALLVDLEPRVINGIQNSEYRNLYNHENIFVAEHGGGAGNNWASGYHQ-GEQVVDDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLANPTFAQTNSLVSTVMSASTTTLRYPGYMNNDL 253          
BLAST of CK932706 vs. ExPASy Swiss-Prot
Match: TBG_USTVI (Tubulin gamma chain OS=Ustilago violacea GN=TUB4 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.842e-35
Identity = 81/253 (32.02%), Postives = 136/253 (53.75%), Query Frame = 3
Query:  111 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKED--AANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDV 863
            RE +++  GQAG Q+G+  W   C EHGI  +G +    T     D  + FF +     ++PRAV +DLEP V+D +++G Y+ L++PE      +   A NN+A+G Y  G+ + +  ++ I + A+    L+GF++ +++                   Y KK    ++V+P       VV+PYNS+LS   L  H D  ++LDN A+  IC+  L ++  ++   N+LVS V+S+ T +LR+ G +N D+
Sbjct:    3 REILTVSAGQAGNQIGSEFWSQLCAEHGISKEGVLEDWAT--DMTDRKDVFFYQADDEHYIPRAVMIDLEPRVLDSIKSGPYKNLYNPENFFYDPQGGGAGNNWAKG-YAAGERVYEEVMEMIDREAEGSDSLEGFMLLHSIAGGTGSGLGSYLLERMNDRYPKKLIQTYSVFPDADSGDVVVQPYNSLLSMKRLTNHADSVIVLDNAALSKICQDRLHVQVASFAQTNQLVSTVMSASTQTLRYPGYMNNDL 252          
BLAST of CK932706 vs. ExPASy Swiss-Prot
Match: TBBP_DROME (Probable tubulin beta chain CG32396 OS=Drosophila melanogaster GN=CG32396 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.142e-35
Identity = 80/253 (31.62%), Postives = 132/253 (52.17%), Query Frame = 3
Query:  108 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGD----DAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALN 854
            MRE +++ IG AG  +G++ W +   EHG+       +    GG      +  N FF+ T + +   R + +D E + I  +   +  QL+ PE  ++G E A NNFARG++T G  I+D  L+  R+  ++   LQGF + +++                   Y       +   PSP +S  VVEPYN++LST +L+ ++ +   LDNEA++ IC R+L ++   Y ++N +V+  +S +T  LRF G LN
Sbjct:    1 MREIVTLQIGGAGNAIGDSFWHVISHEHGVDY-----ASGRFGGTSPLQLERINVFFNATASKRFYARTILIDTEASTIQRLNASS--QLYRPENFVAGSESAGNNFARGYHTDGAAILDQVLENTRREVESVDSLQGFQLLHSIGGGTGSGLTSLIMEALVEQYPDNLLCNYVTIPSPNMSQVVVEPYNALLSTPALVNNSHLTFCLDNEALFQICNRNLKLKMSGYEHINHIVALTMSGITTCLRFPGQLN 246          
BLAST of CK932706 vs. ExPASy Swiss-Prot
Match: TBG2_MAIZE (Tubulin gamma-2 chain OS=Zea mays GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.360e-35
Identity = 86/254 (33.86%), Postives = 138/254 (54.33%), Query Frame = 3
Query:  111 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKED--AANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSP-QVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDV 863
            RE I+I +GQ G Q+G   W+  CLEHGI  DG +    T GG  D  + FF +      +PR++ +DLEP VI+ ++   YR L++ E +   +    A NN+A G++  G+++VD  +D + + AD    L+GF++ +++                   Y KK    ++V+P+  + S  VV+PYNS+L+   L  + D  V+LDN A+  I    L +  PT+   N LVS V+S+ T +LR+ G +N D+
Sbjct:    3 REIITIQVGQCGNQIGMEFWKQLCLEHGIGKDGLLEDFATQGG--DRKDVFFYQADDQHFIPRSLLIDLEPRVINGIQNSEYRNLYNHENIFVAEHGGGAGNNWASGYHQ-GEQVVDDIMDMVDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLSNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDL 253          
BLAST of CK932706 vs. ExPASy Swiss-Prot
Match: TBG2_ARATH (Tubulin gamma-2 chain OS=Arabidopsis thaliana GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.360e-35
Identity = 87/254 (34.25%), Postives = 137/254 (53.94%), Query Frame = 3
Query:  111 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKED--AANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSP-QVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDV 863
            RE I++ +GQ G Q+G   W+  CLEHGI  DG +    T GG  D  + FF +     ++PRA+ +DLEP VI+ ++ G YR L++ E +        A NN+A G++  GK + +  +D I + AD    L+GF++ +++                   Y KK    ++V+P+  + S  VV+PYNS+L+   L  + D  V+LDN A+  I    L +  PT+   N LVS V+S+ T +LR+ G +N D+
Sbjct:    3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGG--DRKDVFFYQADDQHYIPRALLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASGYHQ-GKGVEEEIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLTNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDL 253          
BLAST of CK932706 vs. ExPASy Swiss-Prot
Match: TBG1_MAIZE (Tubulin gamma-1 chain OS=Zea mays GN=TUBG1 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.360e-35
Identity = 89/255 (34.90%), Postives = 139/255 (54.51%), Query Frame = 3
Query:  111 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKED--AANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTS--VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDV 863
            RE I+I +GQ G Q+G   W+  CLEHGI  DG +    T GG  D  + FF +      +PR++ +DLEP VI+ ++   YR L++ E +   +    A NN+A G++  G++ VD  +D + + AD    L+GF++ +++                   Y KK    ++V+P+ QV TS  VV+PYNS+L+   L  + D  V+LDN A+  I    L +  PT+   N LVS V+S+ T +LR+ G +N D+
Sbjct:    3 REIITIQVGQCGNQIGMEFWKQLCLEHGIGKDGLLEDFATQGG--DRKDVFFYQADDQHFIPRSLLIDLEPRVINGIQNSEYRNLYNHENIFVAEHGGGAGNNWASGYHQ-GEQFVDDIMDMVDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPN-QVETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLSNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDL 253          
BLAST of CK932706 vs. ExPASy Swiss-Prot
Match: TBG1_ARATH (Tubulin gamma-1 chain OS=Arabidopsis thaliana GN=TUBG1 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 7.000e-35
Identity = 87/254 (34.25%), Postives = 137/254 (53.94%), Query Frame = 3
Query:  111 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKED--AANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSP-QVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDV 863
            RE I++ +GQ G Q+G   W+  CLEHGI  DG +    T GG  D  + FF +     ++PRA+ +DLEP VI+ ++ G YR L++ E +        A NN+A G++  GK + +  +D I + AD    L+GF++ +++                   Y KK    ++V+P+  + S  VV+PYNS+L+   L  + D  V+LDN A+  I    L +  PT+   N LVS V+S+ T +LR+ G +N D+
Sbjct:    3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGG--DRKDVFFYQADDQHYIPRALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASGYHQ-GKGVEEEIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALGRIAVERLHLTNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDL 253          
The following BLAST results are available for this feature:
BLAST of CK932706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 424
Match NameE-valueIdentityDescription
TBG_SCHPO1.666e-3635.43Tubulin gamma chain OS=Schizosaccharomyces pombe G... [more]
TBG_COPC73.712e-3633.20Tubulin gamma chain OS=Coprinopsis cinerea (strain... [more]
TBG_NEUCR8.269e-3632.68Tubulin gamma chain OS=Neurospora crassa GN=tub-4 ... [more]
TBG2_ORYSJ8.269e-3635.04Tubulin gamma-2 chain OS=Oryza sativa subsp. japon... [more]
TBG_USTVI1.842e-3532.02Tubulin gamma chain OS=Ustilago violacea GN=TUB4 P... [more]
TBBP_DROME3.142e-3531.62Probable tubulin beta chain CG32396 OS=Drosophila ... [more]
TBG2_MAIZE5.360e-3533.86Tubulin gamma-2 chain OS=Zea mays GN=TUBG2 PE=2 SV... [more]
TBG2_ARATH5.360e-3534.25Tubulin gamma-2 chain OS=Arabidopsis thaliana GN=T... [more]
TBG1_MAIZE5.360e-3534.90Tubulin gamma-1 chain OS=Zea mays GN=TUBG1 PE=2 SV... [more]
TBG1_ARATH7.000e-3534.25Tubulin gamma-1 chain OS=Arabidopsis thaliana GN=T... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004530_F02 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IVF_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932706 ID=CK932706; Name=CK932706; organism=Citrus sinensis; type=EST; length=869bp
GCGGGATCCCCAATCCATCCAATTTCACANNNAGGCGTCTTAATAAACGC
CTTCGTTTAGATTCAATTACTTTACGTCGTCGTTTTTTCTTCTCTTAATC
TGCGAAAATGAGAGAGTGCATTTCAATCCATATCGGTCAGGCCGGTATCC
AGGTCGGAAATGCCTGCTGGGAACTCTACTGCCTCGAGCACGGCATTCAG
CCTGATGGCCAAATGCCAAGTGATAAGACAGTCGGAGGTGGCGACGATGC
TTTCAACACCTTTTTCAGTGAAACTGGTGCAGGGAAGCACGTGCCTCGTG
CTGTCTTTGTTGATCTTGAGCCCACTGTCATTGATGAAGTGAGGACCGGA
ACTTACCGCCAGCTCTTCCACCCTGAGCAGCTCATCAGTGGCAAGGAAGA
CGCTGCCAACAACTTCGCCCGTGGCCACTATACCATTGGTAAGGAGATTG
TTGATCTCTGCCTTGACCGCATCAGGAAGCTGGCTGATAACTGCACTGGT
CTCCAGGGATTCCTTGTTTTCAATGCTGTTGGTGGAGGAACTGGCTCTGG
TCTTGGGTCTCTTCTTCTGGAGAGGTTGTCTGTTGACTATGGAAAGAAGT
CAAAGTTGGGCTTCACTGTCTACCCATCTCCTCAGGTCTCCACTTCTGTT
GTTGAGCCTTACAACAGTGTCCTCTCAACCCACTCCCTGTTGGAGCATAC
TGATGTGGCTGTTCTTCTCGACAATGAGGCCATTTATGACATCTGCAGGC
GCTCCCTTGACATTGAACGTCCTACCTATACTAACCTCAATAGACTTGTT
TCTCAGGTCATTTCTTCATTGACTGCCTCACTGAGGTTTGATGGTGCTTT
GAATGTGGATGTGACTGAA
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