CK932706

Overview
NameCK932706
Unique NameCK932706
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932706 vs. ExPASy Swiss-Prot
Match: TBG1_DROME (Tubulin gamma-1 chain OS=Drosophila melanogaster GN=gammaTub23C PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 3.252e-32
Identity = 83/250 (33.20%), Postives = 134/250 (53.60%), Query Frame = 3
Query:  114 ECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKED--AANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSP-QVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALN 854
            E I++ +GQ G Q+G   W+  CLEHGI P G +  +     G D  + FF +     ++PRAV +DLEP VI+ +    Y +L++PE +   K    A NN+A G Y+ G+++ +   D I + AD    L+GF++ +++                   Y KK    F+V+P+  ++S  VV+PYNS+L+   L    D  V+LDN A+  I    L I+ P+++ +N LVS ++S  T +LR+   +N
Sbjct:    4 EIITLQLGQCGNQIGFEFWKRLCLEHGISPSGVL--EDFANDGLDRKDVFFYQADDDHYIPRAVLLDLEPRVINTIMGSVYSKLYNPENVYLSKHGGGAGNNWASG-YSQGEKLQEEVFDIIDREADGSDSLEGFILCHSIAGGTGSGMGSFIMERLADRYPKKLIQTFSVFPNQDEISDVVVQPYNSMLTLKRLTTAADSVVVLDNTALNRIACDRLHIQNPSFSQINNLVSTIMSVSTTTLRYPSYMN 250          
BLAST of CK932706 vs. ExPASy Swiss-Prot
Match: TBG_PLAFO (Tubulin gamma chain OS=Plasmodium falciparum (isolate NF54) GN=G-TUB PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.247e-32
Identity = 80/255 (31.37%), Postives = 137/255 (53.73%), Query Frame = 3
Query:  111 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKED--AANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYP--SPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDV 863
            RE I++  GQ G Q+G   W+  C EH I  +G + ++  +   +D  + FF +      +P A+  DLEP VI+ ++T  YR L++PE +   KE   A NN+  G Y+ G ++ +  +D I +  DN   L+GF++ +++                  +Y KK    F+V+P  + + S  VV+PYNS+L+   L+  TD  V++DN ++  I    L +  PT+   N ++S V+S+ T +LR+ G++N D+
Sbjct:    3 REIITLQCGQCGNQIGVEFWKQLCNEHNIDQEGILKNNNFLN--EDRKDIFFYQADDEHFIPGALLFDLEPRVINSIQTSEYRNLYNPENMFISKEGGGAGNNWGCG-YSQGHKVEEEIIDMIDREVDNSDNLEGFILSHSIAGGTGSGMGSYLLELLNDNYSKKMIQTFSVFPLLTNESSDVVVQPYNSILTLKRLILSTDSVVVIDNTSLNRIFVERLKLNNPTFQQTNTIISNVMSASTTTLRYPGSMNNDM 254          
BLAST of CK932706 vs. ExPASy Swiss-Prot
Match: TBG_ENCCU (Tubulin gamma chain OS=Encephalitozoon cuniculi GN=TUB4 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.366e-30
Identity = 79/249 (31.73%), Postives = 134/249 (53.82%), Query Frame = 3
Query:  108 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKED--AANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVV-EPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDG 845
            MRE +++ +GQ G Q+G   W+  C EHGI   G +   + +G   D  + FF +      VPRA+ VDLEP VI +  +      F  E +    E   A NN+  G Y +GK + +  +D I++ A+ C  L+ FL+ +++                  ++ KK    ++++P+   S+ VV +PYNSVL+ H L+E++D  V++DN ++      SL I  PT+ ++N L+S V+++ T+++RF G
Sbjct:    1 MREVVTLQVGQCGNQMGAEFWKTLCKEHGISMCGVLQDSRDLG---DRKDVFFYQADDNVFVPRAILVDLEPRVISQAPS-----FFSQESIFLSNEGGGAGNNWGHG-YCVGKAMGNDVIDMIQREAEGCDALETFLLLHSIAGGTGSGFGSLLLERIKEEFPKKIVQTYSIFPNNDESSDVVVQPYNSVLTLHRLIENSDCIVVMDNSSLGRYTLDSLRIGTPTFDHINLLISTVMAASTSTIRFPG 240          
BLAST of CK932706 vs. ExPASy Swiss-Prot
Match: TBG_ENTHI (Tubulin gamma chain OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.784e-30
Identity = 79/252 (31.35%), Postives = 133/252 (52.78%), Query Frame = 3
Query:  111 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQ-LISGKEDAANNFARGHYTIGK--EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVY--PSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGAL 851
            RE I++++GQ G Q+G+  ++  C EHGI PDG + +++ +   DD  + FF +    ++VPR++ +DLEP V+D +RT  +R  ++PE  +I     A N++A G+YT  K  EI ++    I +  ++C  L+GF   +++                   Y K     F+V    +P V   VV PYNS+L+   L+      V+ DN A+ DI      ++  T  ++N ++S  +S+ TA+LRF   L
Sbjct:    3 REIITLNVGQCGNQLGSEFFKKICSEHGILPDGSLSTNEFI---DDRKDVFFYQADDQRYVPRSINIDLEPRVLDSIRTSEWRNFYNPENFIIPTNNGAGNSWANGYYTTEKMSEIEEI----IDREVEHCDSLEGFFFCHSICGGTGSGLGSKIMEMISEKYPKNILTSFSVMVKENPDV---VVSPYNSILTLRRLITECQSVVVFDNSALADITHTQFGVDEATVFDMNSIISSSMSAFTANLRFPSTL 244          
BLAST of CK932706 vs. ExPASy Swiss-Prot
Match: TBG_RETFI (Tubulin gamma chain OS=Reticulomyxa filosa PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.670e-28
Identity = 78/254 (30.71%), Postives = 134/254 (52.76%), Query Frame = 3
Query:  111 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKED--AANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVV-EPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDV 863
            RE I++ +GQ G Q+G   W     EHGI PDG +    T G   D  + FF +     ++PRA+ +DLEP VI+ ++   ++ L++PE +    +   A NN+A G YT   E  +  +D I +  DN   L+GF++ +++                   Y KK    ++V+P+    +SVV  PYNSVL+   L+ + D  V++DN +++ I    L ++  ++   N ++S V+++ T +LR+ G +N D+
Sbjct:    3 REIITLQVGQCGNQIGTEFWGRLIAEHGIGPDGIVKEFATEG--TDRKDVFFYQADDQHYIPRALLIDLEPRVINSLQESEFKNLWNPENVYIDSQGGGAGNNWAVG-YTHATEKYEHIMDMIDR-EDNSDSLEGFVLTHSIAGGTGSGFGSHMLEQLTDRYPKKIIQTYSVFPNDSERSSVVVHPYNSVLALKRLILNADAVVVIDNTSLHRIADERLQLDFASFKETNSIISTVMAASTTTLRYPGYMNNDL 252          
BLAST of CK932706 vs. ExPASy Swiss-Prot
Match: TBG_ASHGO (Tubulin gamma chain OS=Ashbya gossypii GN=TUB4 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.412e-27
Identity = 84/246 (34.15%), Postives = 126/246 (51.22%), Query Frame = 3
Query:  114 ECISIHIGQAGIQVGNACWELYCLEHGIQPDGQM--PSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKED--AANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRF 839
            E ISI +GQ G QVG   W     EHGI  DGQ   P D  V   DD  N FF +    +  PRA+  DLEP+ I +V+   +   F+   +   KE+  A N ++ G Y  G E  D  ++ I K  D     +GF + ++V                   Y KK    ++V+PS + S  VV+PYN++L+   L++++D +VL DN+A+ ++  R L     +Y   N+L++ V+SS+T SLRF
Sbjct:    4 EIISIQVGQCGNQVGKQFWGQLAREHGIGVDGQSLHPEDANVVREDDT-NVFFRQNDHNRFTPRALLYDLEPSAIGDVQN-CFPGFFNERNVWISKEELGAGNTWSIG-YDYGLEKQDEFMNMIDKEIDATGNFEGFQLIHSVAGGTGSGLGSNLLEALSDRYHKKIVSTYSVFPSRE-SEVVVQPYNTILTLRRLIDNSDASVLFDNDALLNLTARVLRDSNTSYQQTNQLIASVMSSVTNSLRF 245          
BLAST of CK932706 vs. ExPASy Swiss-Prot
Match: TBG_CANGA (Tubulin gamma chain OS=Candida glabrata GN=TUB4 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.563e-26
Identity = 77/245 (31.43%), Postives = 122/245 (49.80%), Query Frame = 3
Query:  114 ECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMP-SDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKED--AANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRF 839
            E I+I +GQ G  VG   W     EHGI  DG    +D      +D  N FF +    ++VPRA+ +DLEP  + +V++ ++  LF+P       E   A N+++ G Y  G +  D  +D I +  D+    +GF + ++V                   Y K     ++V+PS Q S  VV PYN+VL+   L E  D +++ DN A+ ++  R+      +Y + N+L+S  +SS+T SLRF
Sbjct:    4 EIITIQVGQCGNHVGKYFWNQLLKEHGIDKDGYSKYNDDLTHIREDDTNPFFKQITNNRYVPRAIMIDLEPAAVTDVQS-SFNDLFNPRNTWVSSEGLGAGNSWSTG-YDRGVQNQDRIMDIIDRELDSTDNFEGFQLLHSVAGGTGSGLGSSLLEALTDRYSKSFITTYSVFPSKQ-SEVVVGPYNTVLTLRRLCEDADASIIFDNNALLNLTARTFRDPNTSYEHTNQLISSALSSITNSLRF 245          
BLAST of CK932706 vs. ExPASy Swiss-Prot
Match: TBG_CAEEL (Tubulin gamma chain OS=Caenorhabditis elegans GN=tbg-1 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.940e-26
Identity = 77/248 (31.05%), Postives = 128/248 (51.61%), Query Frame = 3
Query:  120 ISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEV-RTGTYRQLFHPEQLISGKED--AANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVV-EPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGAL 851
            +++H+GQ G Q+  A W+    EHGI   GQ   +  +   +D  +  F +     +VPRAV VDLEP VI+ + ++  +  LF+ + +        A NN+A G Y  G+E+ +  +D I + A+N   L G L  ++V                   + KK    ++V+ +   ST VV  PYN VLS   L+E+ D  V+LDN A++ +       + PT+ ++N LV++++S+ TA  RF+ A+
Sbjct:    8 MTVHVGQCGNQLAQAFWKSMVDEHGINERGQTTHEDDM---NDKKDLLFYQADDDHYVPRAVLVDLEPRVINGMMQSPNFSNLFNTDNIFMSDHGGGAGNNWASG-YCQGQEVQEKIMDIIIREAENTNNLDGILFTHSVSGGTGSGTGSLLLERLREAFPKKVIQTYSVFANSDTSTDVVVHPYNWVLSMQRLIENPDHVVVLDNAALHRLAAGKFKTDTPTFDHINSLVARIMSTSTAPYRFNSAM 251          
BLAST of CK932706 vs. ExPASy Swiss-Prot
Match: TBG_YEAST (Tubulin gamma chain OS=Saccharomyces cerevisiae GN=TUB4 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.259e-24
Identity = 79/246 (32.11%), Postives = 119/246 (48.37%), Query Frame = 3
Query:  114 ECISIHIGQAGIQVGNACWELYCLEHGIQPDG--QMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQ--LISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRF 839
            E I++  GQ G  VG   W     EH I  DG  Q+P   T    DD    FF E    K  PRA+ +D EP+VI +V   T+R  F P    + S    A N++A G Y IG    D  L++I K  D+    +GF + ++V                   Y KK    ++V+P+ + S  VV+ YN++L+   L+E +D  V+ DN ++ +I  +          + N+L+S +ISS+T S+RF
Sbjct:    4 EIITLQAGQCGNHVGKFLWSQLAKEHAIGTDGLSQLPDSSTER--DDDTKPFFRENSRNKFTPRAIMMDSEPSVIADVE-NTFRGFFDPRNTWVASDGASAGNSWANG-YDIGTRNQDDILNKIDKEIDSTDNFEGFQLLHSVAGGTGSGLGSNLLEALCDRYPKKILTTYSVFPA-RSSEVVVQSYNTILALRRLIEDSDATVVFDNASLLNISGKVFRNPNIDLQHTNQLISTIISSVTNSIRF 244          
BLAST of CK932706 vs. ExPASy Swiss-Prot
Match: TBG3_MAIZE (Tubulin gamma-3 chain (Fragment) OS=Zea mays GN=TUBG3 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.483e-24
Identity = 67/207 (32.37%), Postives = 112/207 (54.11%), Query Frame = 3
Query:  255 NTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKED--AANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTS--VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDV 863
            + FF +      +PR++ +DLEP VI+ ++   YR L++ E +   +    A NN+A G++  G++ VD  +D + + AD    L+GF++ +++                   Y KK    ++V+P+ QV TS  VV+PYNS+L+   L  + D  V+LDN A+  I    L +  PT+   N LVS V+S+ T +LR+ G +N D+
Sbjct:    1 DVFFYQADDQHFIPRSLLIDLEPRVINGIQNSEYRNLYNHENIFVAEHGGGAGNNWASGYHQ-GEQFVDDIMDMVDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPN-QVETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLSNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDL 205          
The following BLAST results are available for this feature:
BLAST of CK932706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 424
Match NameE-valueIdentityDescription
TBG1_DROME3.252e-3233.20Tubulin gamma-1 chain OS=Drosophila melanogaster G... [more]
TBG_PLAFO4.247e-3231.37Tubulin gamma chain OS=Plasmodium falciparum (isol... [more]
TBG_ENCCU1.366e-3031.73Tubulin gamma chain OS=Encephalitozoon cuniculi GN... [more]
TBG_ENTHI1.784e-3031.35Tubulin gamma chain OS=Entamoeba histolytica PE=2 ... [more]
TBG_RETFI1.670e-2830.71Tubulin gamma chain OS=Reticulomyxa filosa PE=2 SV... [more]
TBG_ASHGO2.412e-2734.15Tubulin gamma chain OS=Ashbya gossypii GN=TUB4 PE=... [more]
TBG_CANGA1.563e-2631.43Tubulin gamma chain OS=Candida glabrata GN=TUB4 PE... [more]
TBG_CAEEL5.940e-2631.05Tubulin gamma chain OS=Caenorhabditis elegans GN=t... [more]
TBG_YEAST3.259e-2432.11Tubulin gamma chain OS=Saccharomyces cerevisiae GN... [more]
TBG3_MAIZE9.483e-2432.37Tubulin gamma-3 chain (Fragment) OS=Zea mays GN=TU... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004530_F02 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IVF_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932706 ID=CK932706; Name=CK932706; organism=Citrus sinensis; type=EST; length=869bp
GCGGGATCCCCAATCCATCCAATTTCACANNNAGGCGTCTTAATAAACGC
CTTCGTTTAGATTCAATTACTTTACGTCGTCGTTTTTTCTTCTCTTAATC
TGCGAAAATGAGAGAGTGCATTTCAATCCATATCGGTCAGGCCGGTATCC
AGGTCGGAAATGCCTGCTGGGAACTCTACTGCCTCGAGCACGGCATTCAG
CCTGATGGCCAAATGCCAAGTGATAAGACAGTCGGAGGTGGCGACGATGC
TTTCAACACCTTTTTCAGTGAAACTGGTGCAGGGAAGCACGTGCCTCGTG
CTGTCTTTGTTGATCTTGAGCCCACTGTCATTGATGAAGTGAGGACCGGA
ACTTACCGCCAGCTCTTCCACCCTGAGCAGCTCATCAGTGGCAAGGAAGA
CGCTGCCAACAACTTCGCCCGTGGCCACTATACCATTGGTAAGGAGATTG
TTGATCTCTGCCTTGACCGCATCAGGAAGCTGGCTGATAACTGCACTGGT
CTCCAGGGATTCCTTGTTTTCAATGCTGTTGGTGGAGGAACTGGCTCTGG
TCTTGGGTCTCTTCTTCTGGAGAGGTTGTCTGTTGACTATGGAAAGAAGT
CAAAGTTGGGCTTCACTGTCTACCCATCTCCTCAGGTCTCCACTTCTGTT
GTTGAGCCTTACAACAGTGTCCTCTCAACCCACTCCCTGTTGGAGCATAC
TGATGTGGCTGTTCTTCTCGACAATGAGGCCATTTATGACATCTGCAGGC
GCTCCCTTGACATTGAACGTCCTACCTATACTAACCTCAATAGACTTGTT
TCTCAGGTCATTTCTTCATTGACTGCCTCACTGAGGTTTGATGGTGCTTT
GAATGTGGATGTGACTGAA
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