CK932706
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK932706 vs. ExPASy Swiss-Prot
Match: TBA_OCTVU (Tubulin alpha chain (Fragment) OS=Octopus vulgaris PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 3.058e-14 Identity = 36/43 (83.72%), Postives = 43/43 (100.00%), Query Frame = 3 Query: 741 ICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTE 869 IC+R+LDIERP+YTNLNRL+SQV+SS+TASLRFDGALNVD+TE Sbjct: 1 ICKRNLDIERPSYTNLNRLISQVVSSITASLRFDGALNVDLTE 43
BLAST of CK932706 vs. ExPASy Swiss-Prot
Match: TBD_HUMAN (Tubulin delta chain OS=Homo sapiens GN=TUBD1 PE=1 SV=2) HSP 1 Score: 78.9518 bits (193), Expect = 3.993e-14 Identity = 56/240 (23.33%), Postives = 113/240 (47.08%), Query Frame = 3 Query: 120 ISIHIGQAGIQVGNACWE-LYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEV-----RTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSL 821 +++ +GQ G Q+G ++ L H Q M ++ FFSE G + RAV VD+EP VI+++ ++G ++ H K+ + NN+A G+ G + ++ IRK + C GF + ++ Y K+ ++P +V+ YNS+L+ L +D +L +N+AI+ IC + ++I++ +++++N++++ + S+ Sbjct: 4 VTVQLGQCGNQIGFEVFDALLSDSHSSQGLCSMRENEAYQAS--CKERFFSEEENGVPIARAVLVDMEPKVINQMLSKAAQSGQWKYGQHA--CFCQKQGSGNNWAYGYSVHGPRHEESIMNIIRKEVEKCDSFSGFFIIMSMAGGTGSGLGAFVTQNLEDQYSNSLKMNQIIWPYG-TGEVIVQNYNSILTLSHLYRSSDALLLHENDAIHKICAKLMNIKQISFSDINQVLAHQLGSV 238
BLAST of CK932706 vs. ExPASy Swiss-Prot
Match: TBD_MACFA (Tubulin delta chain OS=Macaca fascicularis GN=TUBD1 PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 5.216e-14 Identity = 52/237 (21.94%), Postives = 106/237 (44.73%), Query Frame = 3 Query: 120 ISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTY---RQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSL 821 +++ +GQ G Q+G ++ L G + FFSE G + RAV VD+EP VI++ + R + K+ + NN+A G+ G + +D IRK + C GF + ++ Y K+ ++P +V+ YNS+L+ L +D ++ +N+A++ IC + ++I++ +++++N++++ + S+ Sbjct: 4 VTVQLGQCGNQIGFEVFDAL-LSDSHSSQGLCCKRENEAYQASCKERFFSEEENGVPIARAVLVDMEPKVINQTLSKAAQSGRWKYGQHACFCQKQGSGNNWAYGYSVHGPRHEESIMDLIRKEVEKCDSFSGFFIIMSMAGGTGSGIGAFVTQNLQDQYSNSLKMNQIIWPYG-TGEVIVQNYNSILTLSHLYRSSDALLVHENDAVHKICAKLMNIKQISFSDINQVLAHQLGSV 238
BLAST of CK932706 vs. ExPASy Swiss-Prot
Match: TBD_MOUSE (Tubulin delta chain OS=Mus musculus GN=Tubd1 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.862e-12 Identity = 54/240 (22.50%), Postives = 109/240 (45.42%), Query Frame = 3 Query: 120 ISIHIGQAGIQVGNACWE-LYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEV-----RTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSL 821 +++ +GQ G Q+G ++ L+ H Q G FF E G V RAV VD+EP VI++ ++G + H K+ + NN+A G+ G + + ++ I+ + C L GF + ++ Y K+ ++P +V+ YNS+L+ L +D ++ +N+A++ IC + ++I++ ++ +LN++++ + S+ Sbjct: 4 VTVQLGQCGNQIGFEVFDALFRDSHCSQ--GLCSKRDNEAYQASCRERFFREEENGVPVARAVLVDMEPKVINQTLSKAAQSGRWNYGQHTS--FCQKQGSGNNWAYGYSVHGPKHEESIMNLIQTEVEKCDSLSGFFIIMSMAGGTGSGLGAFVTQKLQDQYSSSLKMNQIIWPYG-TGEVIVQNYNSILTLSHLYRSSDALLIHENDAVHKICAKRMNIKQISFRDLNQVLAHQLGSV 238 The following BLAST results are available for this feature:
BLAST of CK932706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 424
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Sequences
The
following sequences are available for this feature:
EST sequence >CK932706 ID=CK932706; Name=CK932706; organism=Citrus sinensis; type=EST; length=869bpback to top |