CK932706

Overview
NameCK932706
Unique NameCK932706
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932706 vs. ExPASy Swiss-Prot
Match: TBA_OCTVU (Tubulin alpha chain (Fragment) OS=Octopus vulgaris PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.058e-14
Identity = 36/43 (83.72%), Postives = 43/43 (100.00%), Query Frame = 3
Query:  741 ICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTE 869
            IC+R+LDIERP+YTNLNRL+SQV+SS+TASLRFDGALNVD+TE
Sbjct:    1 ICKRNLDIERPSYTNLNRLISQVVSSITASLRFDGALNVDLTE 43          
BLAST of CK932706 vs. ExPASy Swiss-Prot
Match: TBD_HUMAN (Tubulin delta chain OS=Homo sapiens GN=TUBD1 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.993e-14
Identity = 56/240 (23.33%), Postives = 113/240 (47.08%), Query Frame = 3
Query:  120 ISIHIGQAGIQVGNACWE-LYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEV-----RTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSL 821
            +++ +GQ G Q+G   ++ L    H  Q    M  ++           FFSE   G  + RAV VD+EP VI+++     ++G ++   H       K+ + NN+A G+   G    +  ++ IRK  + C    GF +  ++                   Y    K+   ++P       +V+ YNS+L+   L   +D  +L +N+AI+ IC + ++I++ +++++N++++  + S+
Sbjct:    4 VTVQLGQCGNQIGFEVFDALLSDSHSSQGLCSMRENEAYQAS--CKERFFSEEENGVPIARAVLVDMEPKVINQMLSKAAQSGQWKYGQHA--CFCQKQGSGNNWAYGYSVHGPRHEESIMNIIRKEVEKCDSFSGFFIIMSMAGGTGSGLGAFVTQNLEDQYSNSLKMNQIIWPYG-TGEVIVQNYNSILTLSHLYRSSDALLLHENDAIHKICAKLMNIKQISFSDINQVLAHQLGSV 238          
BLAST of CK932706 vs. ExPASy Swiss-Prot
Match: TBD_MACFA (Tubulin delta chain OS=Macaca fascicularis GN=TUBD1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.216e-14
Identity = 52/237 (21.94%), Postives = 106/237 (44.73%), Query Frame = 3
Query:  120 ISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTY---RQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSL 821
            +++ +GQ G Q+G   ++   L       G     +           FFSE   G  + RAV VD+EP VI++  +      R  +        K+ + NN+A G+   G    +  +D IRK  + C    GF +  ++                   Y    K+   ++P       +V+ YNS+L+   L   +D  ++ +N+A++ IC + ++I++ +++++N++++  + S+
Sbjct:    4 VTVQLGQCGNQIGFEVFDAL-LSDSHSSQGLCCKRENEAYQASCKERFFSEEENGVPIARAVLVDMEPKVINQTLSKAAQSGRWKYGQHACFCQKQGSGNNWAYGYSVHGPRHEESIMDLIRKEVEKCDSFSGFFIIMSMAGGTGSGIGAFVTQNLQDQYSNSLKMNQIIWPYG-TGEVIVQNYNSILTLSHLYRSSDALLVHENDAVHKICAKLMNIKQISFSDINQVLAHQLGSV 238          
BLAST of CK932706 vs. ExPASy Swiss-Prot
Match: TBD_MOUSE (Tubulin delta chain OS=Mus musculus GN=Tubd1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.862e-12
Identity = 54/240 (22.50%), Postives = 109/240 (45.42%), Query Frame = 3
Query:  120 ISIHIGQAGIQVGNACWE-LYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEV-----RTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSL 821
            +++ +GQ G Q+G   ++ L+   H  Q  G                 FF E   G  V RAV VD+EP VI++      ++G +    H       K+ + NN+A G+   G +  +  ++ I+   + C  L GF +  ++                   Y    K+   ++P       +V+ YNS+L+   L   +D  ++ +N+A++ IC + ++I++ ++ +LN++++  + S+
Sbjct:    4 VTVQLGQCGNQIGFEVFDALFRDSHCSQ--GLCSKRDNEAYQASCRERFFREEENGVPVARAVLVDMEPKVINQTLSKAAQSGRWNYGQHTS--FCQKQGSGNNWAYGYSVHGPKHEESIMNLIQTEVEKCDSLSGFFIIMSMAGGTGSGLGAFVTQKLQDQYSSSLKMNQIIWPYG-TGEVIVQNYNSILTLSHLYRSSDALLIHENDAVHKICAKRMNIKQISFRDLNQVLAHQLGSV 238          
The following BLAST results are available for this feature:
BLAST of CK932706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 424
Match NameE-valueIdentityDescription
TBA_OCTVU3.058e-1483.72Tubulin alpha chain (Fragment) OS=Octopus vulgaris... [more]
TBD_HUMAN3.993e-1423.33Tubulin delta chain OS=Homo sapiens GN=TUBD1 PE=1 ... [more]
TBD_MACFA5.216e-1421.94Tubulin delta chain OS=Macaca fascicularis GN=TUBD... [more]
TBD_MOUSE2.862e-1222.50Tubulin delta chain OS=Mus musculus GN=Tubd1 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004530_F02 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IVF_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932706 ID=CK932706; Name=CK932706; organism=Citrus sinensis; type=EST; length=869bp
GCGGGATCCCCAATCCATCCAATTTCACANNNAGGCGTCTTAATAAACGC
CTTCGTTTAGATTCAATTACTTTACGTCGTCGTTTTTTCTTCTCTTAATC
TGCGAAAATGAGAGAGTGCATTTCAATCCATATCGGTCAGGCCGGTATCC
AGGTCGGAAATGCCTGCTGGGAACTCTACTGCCTCGAGCACGGCATTCAG
CCTGATGGCCAAATGCCAAGTGATAAGACAGTCGGAGGTGGCGACGATGC
TTTCAACACCTTTTTCAGTGAAACTGGTGCAGGGAAGCACGTGCCTCGTG
CTGTCTTTGTTGATCTTGAGCCCACTGTCATTGATGAAGTGAGGACCGGA
ACTTACCGCCAGCTCTTCCACCCTGAGCAGCTCATCAGTGGCAAGGAAGA
CGCTGCCAACAACTTCGCCCGTGGCCACTATACCATTGGTAAGGAGATTG
TTGATCTCTGCCTTGACCGCATCAGGAAGCTGGCTGATAACTGCACTGGT
CTCCAGGGATTCCTTGTTTTCAATGCTGTTGGTGGAGGAACTGGCTCTGG
TCTTGGGTCTCTTCTTCTGGAGAGGTTGTCTGTTGACTATGGAAAGAAGT
CAAAGTTGGGCTTCACTGTCTACCCATCTCCTCAGGTCTCCACTTCTGTT
GTTGAGCCTTACAACAGTGTCCTCTCAACCCACTCCCTGTTGGAGCATAC
TGATGTGGCTGTTCTTCTCGACAATGAGGCCATTTATGACATCTGCAGGC
GCTCCCTTGACATTGAACGTCCTACCTATACTAACCTCAATAGACTTGTT
TCTCAGGTCATTTCTTCATTGACTGCCTCACTGAGGTTTGATGGTGCTTT
GAATGTGGATGTGACTGAA
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