CK932713

Overview
NameCK932713
Unique NameCK932713
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932713 vs. ExPASy Swiss-Prot
Match: MX_ONCMY (Interferon-induced GTP-binding protein Mx OS=Oncorhynchus mykiss GN=mx PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.908e-17
Identity = 56/141 (39.72%), Postives = 83/141 (58.87%), Query Frame = 2
Query:  323 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKR-FTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEK 742
            +LPAIA            LE++ G   LPRGSGIVTR PL L++ + +EG   + +  +   +    D + V K+I++  D   G    IS   I L I SP+V +LTLIDLPG+ +VAV+GQP++I + I+ ++R +I K
Sbjct:   33 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLELKMKRKKEGEEWHGKISYQDHEEEIEDPSDVEKKIREAQDEMAGVGVGISDDLISLEIGSPDVPDLTLIDLPGIARVAVKGQPENIGEQIKRLIRKFIMK 172          
BLAST of CK932713 vs. ExPASy Swiss-Prot
Match: MX1_BOVIN (Interferon-induced GTP-binding protein Mx1 OS=Bos taurus GN=MX1 PE=2 SV=4)

HSP 1 Score: 87.8113 bits (216), Expect = 6.665e-17
Identity = 73/186 (39.25%), Postives = 94/186 (50.54%), Query Frame = 2
Query:  194 SPEIST*LREKME---NLISLVNKIQRACTALGDHGEASALPTLWD-SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRK-RFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYI 736
            SPE S    E ME   NL S   +  R C  L D     +L    D +LPAIA            LE++ G   LPRGSGIVTR PLVL+L KL        +   + ++    D + V KEI +      G    IS   I L + SP+V +LTLIDLPG+T+VAV  QP  I   I++++R YI
Sbjct:   13 SPESSLNGSEDMESKSNLYSQYEEKVRPCIDLID--SLRSLGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLRLKKLGNEDEWKGKVSFLDKEIEIPDASQVEKEISEAQIAIAGEGTGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPPDIEYQIKSLIRKYI 195          
BLAST of CK932713 vs. ExPASy Swiss-Prot
Match: MX_EPICO (Interferon-induced GTP-binding protein Mx OS=Epinephelus coioides GN=mx PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.485e-16
Identity = 55/141 (39.01%), Postives = 81/141 (57.45%), Query Frame = 2
Query:  323 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIP-RKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEK 742
            +LPAIA            LE++ G   LPRGSGIVTR PL L++ + +EG   Y +  +    K   D + V  +I++  D   G    IS   I L I SP+V +LTLIDLPG+ +VAV+GQP+ I + I+ +++ +I +
Sbjct:   32 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLELKMKRKKEGEEWYGKISYRGCEKELEDPSDVENKIREAQDEMAGVGVGISDDLISLEIASPDVPDLTLIDLPGIARVAVKGQPEDIGKQIKGLIQRFITR 171          
BLAST of CK932713 vs. ExPASy Swiss-Prot
Match: MX3_RAT (Interferon-induced GTP-binding protein Mx3 OS=Rattus norvegicus GN=Mx3 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.485e-16
Identity = 66/177 (37.29%), Postives = 93/177 (52.54%), Query Frame = 2
Query:  218 REKMENLISLVNKIQRACTALGDHGEASALPTLWD-SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRK-RFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEK 742
            ++ + NL S   +  R C  L D     AL    D +LPAIA            LE++ G   LPRGSGIVTR PLVL+L KL +G     +  +   +   +D + V + I    +   G    IS   I L + SP+V +LTLIDLPG+T+VAV  QP  I + I+ ++ +YI+K
Sbjct:   33 KDSVNNLCSQYEEKVRPCIDLID--SLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKKLNQGEEWKGKVTYDDIEVELSDPSEVEEAINTGQNHIAGVGLGISDKLISLDVSSPHVPDLTLIDLPGITRVAVGNQPSDIGRQIKRLITNYIQK 206          
BLAST of CK932713 vs. ExPASy Swiss-Prot
Match: MX2_CANFA (Interferon-induced GTP-binding protein Mx2 OS=Canis familiaris GN=MX2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.485e-16
Identity = 61/144 (42.36%), Postives = 80/144 (55.56%), Query Frame = 2
Query:  323 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQL----HKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEK 742
            +LPAIA            LE++ G   LPRGSGIVTR PLVL+L    HK   G   Y +       +F D + V KEI+   +   G+   IS   I L I SP V +LTLIDLPG+T+VAV  QP  I   I+ ++++YI+K
Sbjct:  117 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKRDPHKAWRGRISYRK----TELQFQDPSQVEKEIRQAQNIIAGQGLGISHELISLEITSPEVPDLTLIDLPGITRVAVGNQPQDIGVQIKALIKNYIQK 255          
BLAST of CK932713 vs. ExPASy Swiss-Prot
Match: MX1_MOUSE (Interferon-induced GTP-binding protein Mx1 OS=Mus musculus GN=Mx1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.485e-16
Identity = 58/141 (41.13%), Postives = 81/141 (57.45%), Query Frame = 2
Query:  323 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRK-RFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEK 742
            +LPAIA            LE++ G   LPRGSGIVTR PLVL+L KL+EG     +  +   +   +D + V + I    +   G    IS   I L + SPNV +LTLIDLPG+T+VAV  QP  I + I+ ++++YI+K
Sbjct:   35 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLRKLKEGEEWRGKVSYDDIEVELSDPSEVEEAINKGQNFIAGVGLGISDKLISLDVSSPNVPDLTLIDLPGITRVAVGNQPADIGRQIKRLIKTYIQK 174          
BLAST of CK932713 vs. ExPASy Swiss-Prot
Match: MX2_RAT (Interferon-induced GTP-binding protein Mx2 OS=Rattus norvegicus GN=Mx2 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.939e-16
Identity = 66/177 (37.29%), Postives = 93/177 (52.54%), Query Frame = 2
Query:  218 REKMENLISLVNKIQRACTALGDHGEASALPTLWD-SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRK-RFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEK 742
            ++ + NL S   +  R C  L D     AL    D +LPAIA            LE++ G   LPRGSGIVTR PLVL+L KL +G     +  +   +   +D + V + I    +   G    IS   I L + SP+V +LTLIDLPG+T+VAV  QP  I + I+ ++ +YI+K
Sbjct:   33 KDSLNNLCSQYEEKVRPCIDLID--SLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKKLNQGEEWKGKVTYDDIEVELSDPSEVEEAINTGQNHIAGVGLGISDKLISLDVSSPHVPDLTLIDLPGITRVAVGNQPADIGRQIKRLITNYIQK 206          
BLAST of CK932713 vs. ExPASy Swiss-Prot
Match: MX_LARCR (Interferon-induced GTP-binding protein Mx OS=Larimichthys crocea GN=mx PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.320e-16
Identity = 53/141 (37.59%), Postives = 83/141 (58.87%), Query Frame = 2
Query:  323 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAA-VRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEK 742
            +LPAIA            LE++ G   LPRGSGIVTR PL L++ + +EG   Y +  +   +   +  A V K+I++  D+  G   +I+   I L I SP+V +LTLI LPG+ +VAV+ QP++I   I+ +++ +I+K
Sbjct:   32 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLELKMKRKKEGEEWYGKISYQDYEEEIEVPADVEKKIREAQDKMAGNGVEIADDLISLEIASPDVPDLTLIALPGIARVAVKKQPENIGDQIKRLIQKFIKK 171          
BLAST of CK932713 vs. ExPASy Swiss-Prot
Match: MXA_DANRE (Interferon-induced GTP-binding protein MxA OS=Danio rerio GN=mxa PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.643e-16
Identity = 54/141 (38.30%), Postives = 80/141 (56.74%), Query Frame = 2
Query:  323 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIP-RKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEK 742
            +LPAIA            LE++ G   LPRGSGIVTR PL L++ + ++  R +    +    + F D A V K+I+   D   G    IS   I L I S +V +LTLIDLPG+ +VAV+GQP++I   I+ ++R ++ +
Sbjct:   36 ALPAIAVIGDQSSGKSSVLEALSGVP-LPRGSGIVTRCPLELKMIRTKDQDRWHGRISYKTCEEDFDDPAEVEKKIRQAQDEMAGAGVGISEELISLQITSADVPDLTLIDLPGIARVAVKGQPENIGDQIKRLIRKFVTR 175          
BLAST of CK932713 vs. ExPASy Swiss-Prot
Match: MX2_SHEEP (Interferon-induced GTP-binding protein Mx2 OS=Ovis aries GN=MX2 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.800e-15
Identity = 59/146 (40.41%), Postives = 81/146 (55.48%), Query Frame = 2
Query:  323 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLE---EGS---REYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEK 742
            +LPAIA            LE++ G   LPRGSGI+TR PLVL+L K E    G    R   + LH P +       V +EI+   +   G    IS   I+L + SP V +LTLIDLPG+T+VAVE QP  I   I+ ++++YI++
Sbjct:  117 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIITRCPLVLKLTKRECEWTGKITYRNVTQQLHNPSE-------VEREIRRAQNIIAGNGVGISHELINLEVTSPEVPDLTLIDLPGITRVAVENQPQDIGLQIKALIKTYIQR 254          
The following BLAST results are available for this feature:
BLAST of CK932713 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
MX_ONCMY3.908e-1739.72Interferon-induced GTP-binding protein Mx OS=Oncor... [more]
MX1_BOVIN6.665e-1739.25Interferon-induced GTP-binding protein Mx1 OS=Bos ... [more]
MX_EPICO1.485e-1639.01Interferon-induced GTP-binding protein Mx OS=Epine... [more]
MX3_RAT1.485e-1637.29Interferon-induced GTP-binding protein Mx3 OS=Ratt... [more]
MX2_CANFA1.485e-1642.36Interferon-induced GTP-binding protein Mx2 OS=Cani... [more]
MX1_MOUSE1.485e-1641.13Interferon-induced GTP-binding protein Mx1 OS=Mus ... [more]
MX2_RAT1.939e-1637.29Interferon-induced GTP-binding protein Mx2 OS=Ratt... [more]
MX_LARCR4.320e-1637.59Interferon-induced GTP-binding protein Mx OS=Larim... [more]
MXA_DANRE5.643e-1638.30Interferon-induced GTP-binding protein MxA OS=Dani... [more]
MX2_SHEEP2.800e-1540.41Interferon-induced GTP-binding protein Mx2 OS=Ovis... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004530_E03 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IVF_E03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932713 ID=CK932713; Name=CK932713; organism=Citrus sinensis; type=EST; length=743bp
GGGGTCAACAGCCTCCCCACTTTCTTTTAAATTTCAAACTCTCTCTCTCT
CTCTCTCTCTCTCTCGTTTGTCCTACCGGCGAAGCAAAAACTAATCACAC
AGATCTCCTCTGAACGTCGCCGTTTCCAGCATCAGTTGTCAGATCCAGCT
GATCTGAATCTGACAGCTGAGATCATCTACGTTGCCGCCGCCGTCTCCCG
AGATATCTACTTAGCTGCGAGAGAAAATGGAGAACTTGATTTCTTTGGTT
AACAAAATACAAAGAGCTTGTACGGCTCTTGGCGACCACGGTGAAGCCAG
CGCATTGCCTACTCTTTGGGACTCTCTTCCTGCTATCGCCGTCGTCGGTG
GCCAGAGTTCTGGAAAGTCATCAGTGTTGGAGAGTATTGTTGGCAAGGAC
TTTTTACCGCGTGGATCTGGTATCGTTACACGGCGTCCTCTGGTGTTGCA
GCTTCATAAACTCGAAGAAGGCAGCAGAGAATATGCAGAGTTTCTTCACA
TTCCAAGGAAAAGATTTACCGATTTTGCTGCTGTGAGGAAAGAGATTCAA
GATGAGACTGATAGAGAGACTGGTCGTACCAAACAAATCTCGAGTGTACC
AATTCATCTCAGCATATATTCCCCTAATGTTGTCAACTTAACGCTGATTG
ATCTTCCTGGGCTCACAAAAGTAGCAGTTGAGGGTCAACCAGACAGTATT
GTGCAAGATATTGAGAATATGGTTCGCTCCTACATTGAGAAGC
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