CK932726
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK932726 vs. ExPASy Swiss-Prot
Match: RS8_RUBXD (30S ribosomal protein S8 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=rpsH PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 1.717e-16 Identity = 42/113 (37.17%), Postives = 72/113 (63.72%), Query Frame = 3 Query: 18 VRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 356 V I + + + +IL EG++ + V ++ +V+ L++ + + R I L+R+SRPG R+Y + IPR+LDG+G+ ILSTS+GI+TD AR + +GGE+LC+++ Sbjct: 25 VEIPHSKMKVEIARILKEEGYVRDYA--VRGSGPQQRIVIELKYGPDGE---RAITGLRRMSRPGRRVYRKQKDIPRVLDGLGVAILSTSQGILTDHEARRKGVGGEVLCFVY 132
BLAST of CK932726 vs. ExPASy Swiss-Prot
Match: RS8_HALHL (30S ribosomal protein S8 OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=rpsH PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 1.717e-16 Identity = 44/116 (37.93%), Postives = 71/116 (61.21%), Query Frame = 3 Query: 9 KGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 356 K VR+ S+ + + +L EG+IE R++ E K K L +TLR+ + I ++R SRPGLR+Y +PR+ +G+G I+STS+G+M+D AR + GGE+LC+++ Sbjct: 22 KADVRMPSSKLKRAIAAVLQEEGYIEGYREVGEEK--KPVLEVTLRYHEGQPA----IREIQRYSRPGLRVYRGRDELPRVRNGLGTAIISTSKGVMSDGQARAQGHGGEVLCWVF 131
BLAST of CK932726 vs. ExPASy Swiss-Prot
Match: RS8_GEOUR (30S ribosomal protein S8 OS=Geobacter uraniireducens (strain Rf4) GN=rpsH PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 1.717e-16 Identity = 43/114 (37.72%), Postives = 73/114 (64.04%), Query Frame = 3 Query: 18 VRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILN-LKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 356 V I S+N+ ++ +L EGFI+N + + +NK + L ++ P++N +KRIS+PG R+Y + IP++ +G+G+ +LSTS+GI+TD+ AR +GGE+LC +W Sbjct: 25 VDIPSSNLKVSLANLLRNEGFIKNYKVIADNKQGVLRVYLKYIDEKD------PVINEIKRISKPGGRVYVDSDGIPKVKNGLGVAVLSTSKGIITDKTARELGVGGELLCTVW 132
BLAST of CK932726 vs. ExPASy Swiss-Prot
Match: RS8_ANASK (30S ribosomal protein S8 OS=Anaeromyxobacter sp. (strain K) GN=rpsH PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 1.717e-16 Identity = 41/117 (35.04%), Postives = 74/117 (63.25%), Query Frame = 3 Query: 6 RKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 356 R V + ++ + + ++L EGFI++ ++ + + + L++ +R+ I ++KR+S+PGLR Y IPR+L+GMG+ ILSTS+G+M DR AR +++GGE++C +W Sbjct: 21 RHEKVLVPASRLKVRIAEVLREEGFIKDF--VLHEDGVQGAITIVLKYSADREPA---ISDIKRVSKPGLRRYVATDSIPRVLNGMGVAILSTSKGVMVDREARKQKVGGELICTVW 132
BLAST of CK932726 vs. ExPASy Swiss-Prot
Match: RS8_ANAD2 (30S ribosomal protein S8 OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=rpsH PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 1.717e-16 Identity = 41/117 (35.04%), Postives = 74/117 (63.25%), Query Frame = 3 Query: 6 RKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 356 R V + ++ + + ++L EGFI++ ++ + + + L++ +R+ I ++KR+S+PGLR Y IPR+L+GMG+ ILSTS+G+M DR AR +++GGE++C +W Sbjct: 21 RHEKVLVPASRLKVRIAEVLREEGFIKDF--VLHEDGVQGAITIVLKYSADREPA---ISDIKRVSKPGLRRYVATDSIPRVLNGMGVAILSTSKGVMVDREARKQKVGGELICTVW 132
BLAST of CK932726 vs. ExPASy Swiss-Prot
Match: RS8_ACIAC (30S ribosomal protein S8 OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=rpsH PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 1.717e-16 Identity = 41/116 (35.34%), Postives = 75/116 (64.66%), Query Frame = 3 Query: 9 KGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILN-LKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYI 353 K TV + S+ + + ++L EG+I+ V+++ K L ++L++ R P++ ++R+SRPGLR+Y IP++++G+G+ I++T +G+MTDR AR +GGE+LCY+ Sbjct: 22 KATVSVPSSKVKIAIAQVLKDEGYIDGFE--VKSEGNKSELEISLKYYAGR-----PVIERIERVSRPGLRVYKGRDSIPQVMNGLGVAIVTTPKGVMTDRKARATGVGGEVLCYV 130
BLAST of CK932726 vs. ExPASy Swiss-Prot
Match: RR8_OENAM (30S ribosomal protein S8, chloroplastic (Fragment) OS=Oenothera ammophila GN=rps8 PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 1.717e-16 Identity = 43/55 (78.18%), Postives = 46/55 (83.64%), Query Frame = 3 Query: 6 RKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGP 170 RKGTVRI STN+ E +VKILLREGFIEN RK +NKK FLVLTLRHRRNRKGP Sbjct: 20 RKGTVRIESTNMAEKIVKILLREGFIENVRK--HQENKKSFLVLTLRHRRNRKGP 72
BLAST of CK932726 vs. ExPASy Swiss-Prot
Match: RS8_YERE8 (30S ribosomal protein S8 OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=rpsH PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 2.243e-16 Identity = 46/115 (40.00%), Postives = 74/115 (64.35%), Query Frame = 3 Query: 9 KGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYI 353 K V + S+ + + +L EGFIE+ + VE + K L L L++ + + + +++RISRPGLRIY +P+++ G+GI ++STS+G+MTDRAAR +GGEI+CY+ Sbjct: 22 KVAVTMPSSKLKVAIANVLKEEGFIEDFK--VEG-DAKPVLELALKYFQGKA----VVESIQRISRPGLRIYKKKDELPKVMAGLGIAVISTSKGVMTDRAARQAGLGGEIICYV 129
BLAST of CK932726 vs. ExPASy Swiss-Prot
Match: RS8_VARPS (30S ribosomal protein S8 OS=Variovorax paradoxus (strain S110) GN=rpsH PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 2.243e-16 Identity = 43/116 (37.07%), Postives = 76/116 (65.52%), Query Frame = 3 Query: 9 KGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILN-LKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYI 353 K TV + S+ + + ++L EG+I+ + V+ ++ K LV+TL++ R P++ ++R+SRPGLR+Y IP++ +G+G+ I++T +G+MTDR AR +GGE+LCY+ Sbjct: 22 KPTVSVPSSKVKIAISQVLKDEGYIDGFQ--VKTEDGKTELVITLKYYAGR-----PVIERIERVSRPGLRVYKASASIPQVQNGLGVAIVTTPKGVMTDRKARATGVGGEVLCYV 130
BLAST of CK932726 vs. ExPASy Swiss-Prot
Match: RS8_PASMU (30S ribosomal protein S8 OS=Pasteurella multocida GN=rpsH PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 2.243e-16 Identity = 42/116 (36.21%), Postives = 75/116 (64.66%), Query Frame = 3 Query: 9 KGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPIL-NLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYI 353 K + + S+ + + +L EG+IE+ + L K L +TL++ + + P++ +++R+SRPGLRIY +P+++ G+G+ ++STS+G+MTDRAAR +GGEI+CY+ Sbjct: 22 KVAISMPSSKLKVAIANVLAEEGYIESVKVL---DGVKPELEITLKYFQGK-----PVVESIQRVSRPGLRIYKRKDELPKVMGGLGVAVVSTSKGVMTDRAARQAGLGGEIICYV 129 The following BLAST results are available for this feature:
BLAST of CK932726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK932726 ID=CK932726; Name=CK932726; organism=Citrus sinensis; type=EST; length=434bpback to top |