CK932726

Overview
NameCK932726
Unique NameCK932726
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length434
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932726 vs. ExPASy Swiss-Prot
Match: RS8_RUBXD (30S ribosomal protein S8 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=rpsH PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.717e-16
Identity = 42/113 (37.17%), Postives = 72/113 (63.72%), Query Frame = 3
Query:   18 VRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 356
            V I  + +   + +IL  EG++ +    V     ++ +V+ L++  + +   R I  L+R+SRPG R+Y   + IPR+LDG+G+ ILSTS+GI+TD  AR + +GGE+LC+++
Sbjct:   25 VEIPHSKMKVEIARILKEEGYVRDYA--VRGSGPQQRIVIELKYGPDGE---RAITGLRRMSRPGRRVYRKQKDIPRVLDGLGVAILSTSQGILTDHEARRKGVGGEVLCFVY 132          
BLAST of CK932726 vs. ExPASy Swiss-Prot
Match: RS8_HALHL (30S ribosomal protein S8 OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=rpsH PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.717e-16
Identity = 44/116 (37.93%), Postives = 71/116 (61.21%), Query Frame = 3
Query:    9 KGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 356
            K  VR+ S+ +   +  +L  EG+IE  R++ E K  K  L +TLR+   +      I  ++R SRPGLR+Y     +PR+ +G+G  I+STS+G+M+D  AR +  GGE+LC+++
Sbjct:   22 KADVRMPSSKLKRAIAAVLQEEGYIEGYREVGEEK--KPVLEVTLRYHEGQPA----IREIQRYSRPGLRVYRGRDELPRVRNGLGTAIISTSKGVMSDGQARAQGHGGEVLCWVF 131          
BLAST of CK932726 vs. ExPASy Swiss-Prot
Match: RS8_GEOUR (30S ribosomal protein S8 OS=Geobacter uraniireducens (strain Rf4) GN=rpsH PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.717e-16
Identity = 43/114 (37.72%), Postives = 73/114 (64.04%), Query Frame = 3
Query:   18 VRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILN-LKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 356
            V I S+N+  ++  +L  EGFI+N + + +NK     + L     ++      P++N +KRIS+PG R+Y +   IP++ +G+G+ +LSTS+GI+TD+ AR   +GGE+LC +W
Sbjct:   25 VDIPSSNLKVSLANLLRNEGFIKNYKVIADNKQGVLRVYLKYIDEKD------PVINEIKRISKPGGRVYVDSDGIPKVKNGLGVAVLSTSKGIITDKTARELGVGGELLCTVW 132          
BLAST of CK932726 vs. ExPASy Swiss-Prot
Match: RS8_ANASK (30S ribosomal protein S8 OS=Anaeromyxobacter sp. (strain K) GN=rpsH PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.717e-16
Identity = 41/117 (35.04%), Postives = 74/117 (63.25%), Query Frame = 3
Query:    6 RKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 356
            R   V + ++ +   + ++L  EGFI++   ++     +  + + L++  +R+     I ++KR+S+PGLR Y     IPR+L+GMG+ ILSTS+G+M DR AR +++GGE++C +W
Sbjct:   21 RHEKVLVPASRLKVRIAEVLREEGFIKDF--VLHEDGVQGAITIVLKYSADREPA---ISDIKRVSKPGLRRYVATDSIPRVLNGMGVAILSTSKGVMVDREARKQKVGGELICTVW 132          
BLAST of CK932726 vs. ExPASy Swiss-Prot
Match: RS8_ANAD2 (30S ribosomal protein S8 OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=rpsH PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.717e-16
Identity = 41/117 (35.04%), Postives = 74/117 (63.25%), Query Frame = 3
Query:    6 RKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 356
            R   V + ++ +   + ++L  EGFI++   ++     +  + + L++  +R+     I ++KR+S+PGLR Y     IPR+L+GMG+ ILSTS+G+M DR AR +++GGE++C +W
Sbjct:   21 RHEKVLVPASRLKVRIAEVLREEGFIKDF--VLHEDGVQGAITIVLKYSADREPA---ISDIKRVSKPGLRRYVATDSIPRVLNGMGVAILSTSKGVMVDREARKQKVGGELICTVW 132          
BLAST of CK932726 vs. ExPASy Swiss-Prot
Match: RS8_ACIAC (30S ribosomal protein S8 OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=rpsH PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.717e-16
Identity = 41/116 (35.34%), Postives = 75/116 (64.66%), Query Frame = 3
Query:    9 KGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILN-LKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYI 353
            K TV + S+ +   + ++L  EG+I+     V+++  K  L ++L++   R     P++  ++R+SRPGLR+Y     IP++++G+G+ I++T +G+MTDR AR   +GGE+LCY+
Sbjct:   22 KATVSVPSSKVKIAIAQVLKDEGYIDGFE--VKSEGNKSELEISLKYYAGR-----PVIERIERVSRPGLRVYKGRDSIPQVMNGLGVAIVTTPKGVMTDRKARATGVGGEVLCYV 130          
BLAST of CK932726 vs. ExPASy Swiss-Prot
Match: RR8_OENAM (30S ribosomal protein S8, chloroplastic (Fragment) OS=Oenothera ammophila GN=rps8 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.717e-16
Identity = 43/55 (78.18%), Postives = 46/55 (83.64%), Query Frame = 3
Query:    6 RKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGP 170
            RKGTVRI STN+ E +VKILLREGFIEN RK    +NKK FLVLTLRHRRNRKGP
Sbjct:   20 RKGTVRIESTNMAEKIVKILLREGFIENVRK--HQENKKSFLVLTLRHRRNRKGP 72          
BLAST of CK932726 vs. ExPASy Swiss-Prot
Match: RS8_YERE8 (30S ribosomal protein S8 OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=rpsH PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.243e-16
Identity = 46/115 (40.00%), Postives = 74/115 (64.35%), Query Frame = 3
Query:    9 KGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYI 353
            K  V + S+ +   +  +L  EGFIE+ +  VE  + K  L L L++ + +      + +++RISRPGLRIY     +P+++ G+GI ++STS+G+MTDRAAR   +GGEI+CY+
Sbjct:   22 KVAVTMPSSKLKVAIANVLKEEGFIEDFK--VEG-DAKPVLELALKYFQGKA----VVESIQRISRPGLRIYKKKDELPKVMAGLGIAVISTSKGVMTDRAARQAGLGGEIICYV 129          
BLAST of CK932726 vs. ExPASy Swiss-Prot
Match: RS8_VARPS (30S ribosomal protein S8 OS=Variovorax paradoxus (strain S110) GN=rpsH PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.243e-16
Identity = 43/116 (37.07%), Postives = 76/116 (65.52%), Query Frame = 3
Query:    9 KGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILN-LKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYI 353
            K TV + S+ +   + ++L  EG+I+  +  V+ ++ K  LV+TL++   R     P++  ++R+SRPGLR+Y     IP++ +G+G+ I++T +G+MTDR AR   +GGE+LCY+
Sbjct:   22 KPTVSVPSSKVKIAISQVLKDEGYIDGFQ--VKTEDGKTELVITLKYYAGR-----PVIERIERVSRPGLRVYKASASIPQVQNGLGVAIVTTPKGVMTDRKARATGVGGEVLCYV 130          
BLAST of CK932726 vs. ExPASy Swiss-Prot
Match: RS8_PASMU (30S ribosomal protein S8 OS=Pasteurella multocida GN=rpsH PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.243e-16
Identity = 42/116 (36.21%), Postives = 75/116 (64.66%), Query Frame = 3
Query:    9 KGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPIL-NLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYI 353
            K  + + S+ +   +  +L  EG+IE+ + L      K  L +TL++ + +     P++ +++R+SRPGLRIY     +P+++ G+G+ ++STS+G+MTDRAAR   +GGEI+CY+
Sbjct:   22 KVAISMPSSKLKVAIANVLAEEGYIESVKVL---DGVKPELEITLKYFQGK-----PVVESIQRVSRPGLRIYKRKDELPKVMGGLGVAVVSTSKGVMTDRAARQAGLGGEIICYV 129          
The following BLAST results are available for this feature:
BLAST of CK932726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS8_RUBXD1.717e-1637.1730S ribosomal protein S8 OS=Rubrobacter xylanophil... [more]
RS8_HALHL1.717e-1637.9330S ribosomal protein S8 OS=Halorhodospira halophi... [more]
RS8_GEOUR1.717e-1637.7230S ribosomal protein S8 OS=Geobacter uraniireduce... [more]
RS8_ANASK1.717e-1635.0430S ribosomal protein S8 OS=Anaeromyxobacter sp. (... [more]
RS8_ANAD21.717e-1635.0430S ribosomal protein S8 OS=Anaeromyxobacter dehal... [more]
RS8_ACIAC1.717e-1635.3430S ribosomal protein S8 OS=Acidovorax avenae subs... [more]
RR8_OENAM1.717e-1678.1830S ribosomal protein S8, chloroplastic (Fragment)... [more]
RS8_YERE82.243e-1640.0030S ribosomal protein S8 OS=Yersinia enterocolitic... [more]
RS8_VARPS2.243e-1637.0730S ribosomal protein S8 OS=Variovorax paradoxus (... [more]
RS8_PASMU2.243e-1636.2130S ribosomal protein S8 OS=Pasteurella multocida ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004530_D08 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IVF_D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932726 ID=CK932726; Name=CK932726; organism=Citrus sinensis; type=EST; length=434bp
GGGGTAGAAAGGGAACGGTTCGAATAGCATCTACTAACATCACCGAAAAC
GTTGTTAAAATCCTTTTGCGAGAGGGTTTTATCGAAAACGCAAGGAAACT
CGTGGAAAACAAAAACAAAAAAGAGTTTTTGGTTTTAACCCTACGACATC
GAAGGAATAGGAAAGGGCCGTATAGACCCATTTTAAATTTAAAACGAATC
AGTCGACCCGGTCTACGAATCTATTTTAACTATCGACGAATTCCTAGAAT
TTTAGATGGGATGGGGATTGTAATTCTCTCTACTTCTCGGGGTATAATGA
CAGACCGAGCGGCTCGACTGGAAAGAATCGGTGGAGAAATTTTGTGTTAT
ATATGGTAATTATTCTGCTATCCGAATTGTATTTGGAGCTTACTTTTATG
TTGTGAGAAAAAAAAAAAAAAAAAAAAAAAAAAA
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