CK932727

Overview
NameCK932727
Unique NameCK932727
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932727 vs. ExPASy Swiss-Prot
Match: IF3_LISMF (Translation initiation factor IF-3 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=infC PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.072e-21
Identity = 53/131 (40.46%), Postives = 79/131 (60.31%), Query Frame = 3
Query:  312 DGIRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRAMDYNKYRYEXXXXXXXXXXXSAANRMDLQELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELI 704
            DGIR+  VRLID     +G+  K +A+Q+AE A LDLV+V+P A PPV R MDY K+R+E                + ++E+++   ID+HD+  +L+ ARKFL+ GDKVK  +  KGR    + I  +++
Sbjct:    9 DGIRAREVRLIDQDGEQLGVKSKIDALQIAEKANLDLVLVAPTAKPPVARIMDYGKFRFEQQKKDKEARKNQKV--IVMKEVRLSPTIDEHDFDTKLRNARKFLEKGDKVKCSIRFKGRAITHKEIGQKVL 137          
BLAST of CK932727 vs. ExPASy Swiss-Prot
Match: IF3_LISIN (Translation initiation factor IF-3 OS=Listeria innocua GN=infC PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.072e-21
Identity = 53/131 (40.46%), Postives = 79/131 (60.31%), Query Frame = 3
Query:  312 DGIRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRAMDYNKYRYEXXXXXXXXXXXSAANRMDLQELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELI 704
            DGIR+  VRLID     +G+  K +A+Q+AE A LDLV+V+P A PPV R MDY K+R+E                + ++E+++   ID+HD+  +L+ ARKFL+ GDKVK  +  KGR    + I  +++
Sbjct:    9 DGIRAREVRLIDQDGEQLGVKSKIDALQIAEKANLDLVLVAPTAKPPVARIMDYGKFRFEQQKKDKEARKNQKV--IVMKEVRLSPTIDEHDFDTKLRNARKFLEKGDKVKCSIRFKGRAITHKEIGQKVL 137          
BLAST of CK932727 vs. ExPASy Swiss-Prot
Match: IF3_LACPL (Translation initiation factor IF-3 OS=Lactobacillus plantarum GN=infC PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.401e-21
Identity = 53/131 (40.46%), Postives = 80/131 (61.07%), Query Frame = 3
Query:  312 DGIRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRAMDYNKYRYEXXXXXXXXXXXSAANRMDLQELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELI 704
            DGIR+  VRLI +    +G+  + EA+Q+AEDA LDLV+V+P A PPV R MDY KYR+E                + ++E+++   ID +D++ +LK A KFL  GDKV+V +  KGR    ++I  +++
Sbjct:   11 DGIRAREVRLIASDGEQLGVKSRQEAMQIAEDASLDLVLVAPKAKPPVARIMDYGKYRFEQQKKDREARKKQKV--VSIKEVRLSPAIDTNDFNTKLKHAEKFLSKGDKVRVSIRFKGRAITHKDIGRQVL 139          
BLAST of CK932727 vs. ExPASy Swiss-Prot
Match: IF3_PROM5 (Translation initiation factor IF-3 OS=Prochlorococcus marinus (strain MIT 9515) GN=infC PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.389e-21
Identity = 52/129 (40.31%), Postives = 82/129 (63.57%), Query Frame = 3
Query:  318 IRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRAMDYNKYRYEXXXXXXXXXXXSAANRMDLQELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELI 704
            I+   +R++D+    +G++ + +A+++A   ELDLV+VS  A+PPV R MDY KY++E           S  ++ +++E+KM Y ID+HDY VR+  A +FLK GDKVK  V  +GRE +  N+A  L+
Sbjct:   23 IKYPQLRVVDSDGKQLGVIDRIKALEIANQRELDLVLVSEKANPPVCRIMDYGKYKFEQEKKAKEARKKS--HQTEVKEVKMRYKIDKHDYDVRIGQAVRFLKAGDKVKCTVIFRGREIQHSNLAETLL 149          
BLAST of CK932727 vs. ExPASy Swiss-Prot
Match: IF3_PROM1 (Translation initiation factor IF-3 OS=Prochlorococcus marinus (strain NATL1A) GN=infC PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.389e-21
Identity = 51/129 (39.53%), Postives = 83/129 (64.34%), Query Frame = 3
Query:  318 IRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRAMDYNKYRYEXXXXXXXXXXXSAANRMDLQELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELI 704
            I  +++R++D+    +G++ + EA+++A++ ELDLV+VS  A PPV R M+Y K+++E           S  ++ +++E+KM Y IDQHDY VR+  A +FLK GDKVK  V  +GRE +   +A  L+
Sbjct:   23 ISYSSLRVVDSDGTQLGVISREEALEVAKERELDLVLVSEKATPPVCRIMNYGKFKFEQEKKAKEAKKKS--HQTEVKEVKMRYKIDQHDYQVRISQATRFLKAGDKVKCTVIFRGREIQHTALAETLL 149          
BLAST of CK932727 vs. ExPASy Swiss-Prot
Match: IF3C_PORPU (Translation initiation factor IF-3, chloroplastic OS=Porphyra purpurea GN=infC PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.389e-21
Identity = 56/150 (37.33%), Postives = 83/150 (55.33%), Query Frame = 3
Query:  255 YSRRRQKEKDLEEEQAFDIDGIRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRAMDYNKYRYEXXXXXXXXXXXSAANRMDLQELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELI 704
            Y   ++  +DL +      D I+   VR+ID +   +GI     AIQ+A    LDLV+VS  +DPPV R +DY KY++               +   ++E+KM Y I++HDY VR+  A KFL+ GDKVK  +  +GRE +  N+AI L+
Sbjct:    5 YKNSKKLSRDLPQIN----DRIKFPKVRVIDDEGEQLGIFAPEAAIQLATKQGLDLVLVSDKSDPPVCRILDYGKYKFTQEKRAREAKKKQ--HNSSIKEVKMRYKIEEHDYKVRINQASKFLQSGDKVKATITFRGREIQHSNLAINLL 148          
BLAST of CK932727 vs. ExPASy Swiss-Prot
Match: IF3_PROMT (Translation initiation factor IF-3 OS=Prochlorococcus marinus (strain NATL2A) GN=infC PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.120e-21
Identity = 54/147 (36.73%), Postives = 90/147 (61.22%), Query Frame = 3
Query:  264 RRQKEKDLEEEQAFDIDGIRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRAMDYNKYRYEXXXXXXXXXXXSAANRMDLQELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELI 704
            RR  E++L        + I  +++R++D+    +G++ + +A+++A++ ELDLV+VS  A PPV R M+Y K+++E           S  ++ +++E+KM Y IDQHDY VR+  A +FLK GDKVK  V  +GRE +   +A  L+
Sbjct:    9 RRAPERELPNIN----ERISYSSLRVVDSDGTQLGVISREDALEVAKERELDLVLVSEKATPPVCRIMNYGKFKFEQEKKAKEAKKKS--HQTEVKEVKMRYKIDQHDYQVRISQATRFLKAGDKVKCTVIFRGREIQHTALAETLL 149          
BLAST of CK932727 vs. ExPASy Swiss-Prot
Match: IF3_BACHD (Translation initiation factor IF-3 OS=Bacillus halodurans GN=infC PE=3 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 3.120e-21
Identity = 50/119 (42.02%), Postives = 74/119 (62.18%), Query Frame = 3
Query:  312 DGIRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRAMDYNKYRYEXXXXXXXXXXXSAANRMDLQELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGR 668
            +GIR+  VRLI A  + +G+  K+EA+ MA +  LDLV V+P+A PPV R MDY KYRYE                ++++E+++   I+ HD++ +L+ ARKFL  GDKVK  +  +GR
Sbjct:    9 EGIRAREVRLIGANGDQIGVKSKAEALDMARNVNLDLVCVAPNAKPPVCRIMDYGKYRYE--QQKKDKEARKKQKTINVKEVRLSPTIEDHDFNTKLRNARKFLSKGDKVKAAIRFRGR 125          
BLAST of CK932727 vs. ExPASy Swiss-Prot
Match: IF3C_GRATL (Translation initiation factor IF-3, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=infC PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.120e-21
Identity = 55/147 (37.41%), Postives = 88/147 (59.86%), Query Frame = 3
Query:  264 RRQKEKDLEEEQAFDIDGIRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRAMDYNKYRYEXXXXXXXXXXXSAANRMDLQELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELI 704
            + +KE+   E +    + I+ + +RLID   + +GI   SEA+ +A +A LDLV++S  ++PPV R +DY KY++               + + ++E+KM Y ID HDY+VR+  A +FL+ GDKVK  V  +GRE +   +AIEL+
Sbjct:    4 KSKKERKRNEIEPLINERIKYSQIRLIDTSGSQLGIYSSSEALTIALNAGLDLVLISEKSNPPVCRIIDYGKYKF--AQEKKAKEAKKKQHNVTIKEVKMRYKIDVHDYNVRINQAFRFLQGGDKVKANVIFRGREIQHTKLAIELL 148          
BLAST of CK932727 vs. ExPASy Swiss-Prot
Match: IF3_RHOS4 (Translation initiation factor IF-3 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=infC PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.951e-21
Identity = 51/129 (39.53%), Postives = 79/129 (61.24%), Query Frame = 3
Query:  318 IRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRAMDYNKYRYEXXXXXXXXXXXSAANRMDLQELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELI 704
            IR   VRLI A    +G+V  S A+ MAE+A LDLV +SP+A+PPV + MD+ K++YE              + ++++E+K     D HDY V++++  KFL +GDKVKV +  +GRE   + + +EL+
Sbjct:   22 IRCPEVRLIGANGENIGVVTPSRAMMMAEEAGLDLVEISPNAEPPVCKIMDFGKFKYE--QQKREAEARKKQHIIEIKEIKFRPGTDTHDYDVKMRSVLKFLSEGDKVKVTLRFRGREMAHQELGLELL 148          
The following BLAST results are available for this feature:
BLAST of CK932727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 292
Match NameE-valueIdentityDescription
IF3_LISMF1.072e-2140.46Translation initiation factor IF-3 OS=Listeria mon... [more]
IF3_LISIN1.072e-2140.46Translation initiation factor IF-3 OS=Listeria inn... [more]
IF3_LACPL1.401e-2140.46Translation initiation factor IF-3 OS=Lactobacillu... [more]
IF3_PROM52.389e-2140.31Translation initiation factor IF-3 OS=Prochlorococ... [more]
IF3_PROM12.389e-2139.53Translation initiation factor IF-3 OS=Prochlorococ... [more]
IF3C_PORPU2.389e-2137.33Translation initiation factor IF-3, chloroplastic ... [more]
IF3_PROMT3.120e-2136.73Translation initiation factor IF-3 OS=Prochlorococ... [more]
IF3_BACHD3.120e-2142.02Translation initiation factor IF-3 OS=Bacillus hal... [more]
IF3C_GRATL3.120e-2137.41Translation initiation factor IF-3, chloroplastic ... [more]
IF3_RHOS46.951e-2139.53Translation initiation factor IF-3 OS=Rhodobacter ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004530_D10 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IVF_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932727 ID=CK932727; Name=CK932727; organism=Citrus sinensis; type=EST; length=704bp
GGGGCTCTCTGGTTCGCGGAGTCCCAACTCCCGCTTCCCTTGAAAACGCC
ACTATGGCTGGTCTCGCCAGCGCCTTTCACTTTTCTAAAACGACACCGTC
GCTCTCTTCAATCGAGTCCAAGTTCTTCGGCCTCCATTTGTGTAACCTCA
ACCATTTCTTCCTCATTTCTTTCTCGCCTTCTCCCCATCACCACAACGTT
TCCATCACCGCCAGATACGGCGGCGGTGGCGGGCCCCGCTTCGCAGGCTC
CGACTACTCCCGCCGCCGCCAAAAGGAAAAAGATTTGGAAGAAGAGCAAG
CCTTTGATATCGATGGCATCAGGTCGAACACTGTGAGGCTTATTGATGCT
CAGCAAAACATGGTTGGTATAGTTCCTAAGAGTGAAGCTATTCAAATGGC
CGAGGATGCTGAACTAGACCTGGTGATAGTTTCCCCAGATGCAGATCCTC
CAGTTGTCAGAGCAATGGATTACAATAAATATAGATATGAACAGCAAAAG
AAGAAGAAAGGGCAGCAGAAGAAAAGTGCAGCCAATCGGATGGATTTGCA
GGAACTTAAAATGGGTTATAATATTGACCAGCATGATTATTCTGTGCGTC
TAAAAGCTGCAAGGAAGTTTCTGAAAGATGGAGACAAGGTTAAGGTCATA
GTGAACCTCAAAGGGCGGGAAAATGAATTCAGAAATATTGCTATTGAGCT
AATA
back to top