CK932727
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK932727 vs. ExPASy Swiss-Prot
Match: IF3_LISMF (Translation initiation factor IF-3 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=infC PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.072e-21 Identity = 53/131 (40.46%), Postives = 79/131 (60.31%), Query Frame = 3 Query: 312 DGIRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRAMDYNKYRYEXXXXXXXXXXXSAANRMDLQELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELI 704 DGIR+ VRLID +G+ K +A+Q+AE A LDLV+V+P A PPV R MDY K+R+E + ++E+++ ID+HD+ +L+ ARKFL+ GDKVK + KGR + I +++ Sbjct: 9 DGIRAREVRLIDQDGEQLGVKSKIDALQIAEKANLDLVLVAPTAKPPVARIMDYGKFRFEQQKKDKEARKNQKV--IVMKEVRLSPTIDEHDFDTKLRNARKFLEKGDKVKCSIRFKGRAITHKEIGQKVL 137
BLAST of CK932727 vs. ExPASy Swiss-Prot
Match: IF3_LISIN (Translation initiation factor IF-3 OS=Listeria innocua GN=infC PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.072e-21 Identity = 53/131 (40.46%), Postives = 79/131 (60.31%), Query Frame = 3 Query: 312 DGIRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRAMDYNKYRYEXXXXXXXXXXXSAANRMDLQELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELI 704 DGIR+ VRLID +G+ K +A+Q+AE A LDLV+V+P A PPV R MDY K+R+E + ++E+++ ID+HD+ +L+ ARKFL+ GDKVK + KGR + I +++ Sbjct: 9 DGIRAREVRLIDQDGEQLGVKSKIDALQIAEKANLDLVLVAPTAKPPVARIMDYGKFRFEQQKKDKEARKNQKV--IVMKEVRLSPTIDEHDFDTKLRNARKFLEKGDKVKCSIRFKGRAITHKEIGQKVL 137
BLAST of CK932727 vs. ExPASy Swiss-Prot
Match: IF3_LACPL (Translation initiation factor IF-3 OS=Lactobacillus plantarum GN=infC PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.401e-21 Identity = 53/131 (40.46%), Postives = 80/131 (61.07%), Query Frame = 3 Query: 312 DGIRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRAMDYNKYRYEXXXXXXXXXXXSAANRMDLQELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELI 704 DGIR+ VRLI + +G+ + EA+Q+AEDA LDLV+V+P A PPV R MDY KYR+E + ++E+++ ID +D++ +LK A KFL GDKV+V + KGR ++I +++ Sbjct: 11 DGIRAREVRLIASDGEQLGVKSRQEAMQIAEDASLDLVLVAPKAKPPVARIMDYGKYRFEQQKKDREARKKQKV--VSIKEVRLSPAIDTNDFNTKLKHAEKFLSKGDKVRVSIRFKGRAITHKDIGRQVL 139
BLAST of CK932727 vs. ExPASy Swiss-Prot
Match: IF3_PROM5 (Translation initiation factor IF-3 OS=Prochlorococcus marinus (strain MIT 9515) GN=infC PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.389e-21 Identity = 52/129 (40.31%), Postives = 82/129 (63.57%), Query Frame = 3 Query: 318 IRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRAMDYNKYRYEXXXXXXXXXXXSAANRMDLQELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELI 704 I+ +R++D+ +G++ + +A+++A ELDLV+VS A+PPV R MDY KY++E S ++ +++E+KM Y ID+HDY VR+ A +FLK GDKVK V +GRE + N+A L+ Sbjct: 23 IKYPQLRVVDSDGKQLGVIDRIKALEIANQRELDLVLVSEKANPPVCRIMDYGKYKFEQEKKAKEARKKS--HQTEVKEVKMRYKIDKHDYDVRIGQAVRFLKAGDKVKCTVIFRGREIQHSNLAETLL 149
BLAST of CK932727 vs. ExPASy Swiss-Prot
Match: IF3_PROM1 (Translation initiation factor IF-3 OS=Prochlorococcus marinus (strain NATL1A) GN=infC PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.389e-21 Identity = 51/129 (39.53%), Postives = 83/129 (64.34%), Query Frame = 3 Query: 318 IRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRAMDYNKYRYEXXXXXXXXXXXSAANRMDLQELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELI 704 I +++R++D+ +G++ + EA+++A++ ELDLV+VS A PPV R M+Y K+++E S ++ +++E+KM Y IDQHDY VR+ A +FLK GDKVK V +GRE + +A L+ Sbjct: 23 ISYSSLRVVDSDGTQLGVISREEALEVAKERELDLVLVSEKATPPVCRIMNYGKFKFEQEKKAKEAKKKS--HQTEVKEVKMRYKIDQHDYQVRISQATRFLKAGDKVKCTVIFRGREIQHTALAETLL 149
BLAST of CK932727 vs. ExPASy Swiss-Prot
Match: IF3C_PORPU (Translation initiation factor IF-3, chloroplastic OS=Porphyra purpurea GN=infC PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.389e-21 Identity = 56/150 (37.33%), Postives = 83/150 (55.33%), Query Frame = 3 Query: 255 YSRRRQKEKDLEEEQAFDIDGIRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRAMDYNKYRYEXXXXXXXXXXXSAANRMDLQELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELI 704 Y ++ +DL + D I+ VR+ID + +GI AIQ+A LDLV+VS +DPPV R +DY KY++ + ++E+KM Y I++HDY VR+ A KFL+ GDKVK + +GRE + N+AI L+ Sbjct: 5 YKNSKKLSRDLPQIN----DRIKFPKVRVIDDEGEQLGIFAPEAAIQLATKQGLDLVLVSDKSDPPVCRILDYGKYKFTQEKRAREAKKKQ--HNSSIKEVKMRYKIEEHDYKVRINQASKFLQSGDKVKATITFRGREIQHSNLAINLL 148
BLAST of CK932727 vs. ExPASy Swiss-Prot
Match: IF3_PROMT (Translation initiation factor IF-3 OS=Prochlorococcus marinus (strain NATL2A) GN=infC PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 3.120e-21 Identity = 54/147 (36.73%), Postives = 90/147 (61.22%), Query Frame = 3 Query: 264 RRQKEKDLEEEQAFDIDGIRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRAMDYNKYRYEXXXXXXXXXXXSAANRMDLQELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELI 704 RR E++L + I +++R++D+ +G++ + +A+++A++ ELDLV+VS A PPV R M+Y K+++E S ++ +++E+KM Y IDQHDY VR+ A +FLK GDKVK V +GRE + +A L+ Sbjct: 9 RRAPERELPNIN----ERISYSSLRVVDSDGTQLGVISREDALEVAKERELDLVLVSEKATPPVCRIMNYGKFKFEQEKKAKEAKKKS--HQTEVKEVKMRYKIDQHDYQVRISQATRFLKAGDKVKCTVIFRGREIQHTALAETLL 149
BLAST of CK932727 vs. ExPASy Swiss-Prot
Match: IF3_BACHD (Translation initiation factor IF-3 OS=Bacillus halodurans GN=infC PE=3 SV=3) HSP 1 Score: 102.064 bits (253), Expect = 3.120e-21 Identity = 50/119 (42.02%), Postives = 74/119 (62.18%), Query Frame = 3 Query: 312 DGIRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRAMDYNKYRYEXXXXXXXXXXXSAANRMDLQELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGR 668 +GIR+ VRLI A + +G+ K+EA+ MA + LDLV V+P+A PPV R MDY KYRYE ++++E+++ I+ HD++ +L+ ARKFL GDKVK + +GR Sbjct: 9 EGIRAREVRLIGANGDQIGVKSKAEALDMARNVNLDLVCVAPNAKPPVCRIMDYGKYRYE--QQKKDKEARKKQKTINVKEVRLSPTIEDHDFNTKLRNARKFLSKGDKVKAAIRFRGR 125
BLAST of CK932727 vs. ExPASy Swiss-Prot
Match: IF3C_GRATL (Translation initiation factor IF-3, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=infC PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 3.120e-21 Identity = 55/147 (37.41%), Postives = 88/147 (59.86%), Query Frame = 3 Query: 264 RRQKEKDLEEEQAFDIDGIRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRAMDYNKYRYEXXXXXXXXXXXSAANRMDLQELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELI 704 + +KE+ E + + I+ + +RLID + +GI SEA+ +A +A LDLV++S ++PPV R +DY KY++ + + ++E+KM Y ID HDY+VR+ A +FL+ GDKVK V +GRE + +AIEL+ Sbjct: 4 KSKKERKRNEIEPLINERIKYSQIRLIDTSGSQLGIYSSSEALTIALNAGLDLVLISEKSNPPVCRIIDYGKYKF--AQEKKAKEAKKKQHNVTIKEVKMRYKIDVHDYNVRINQAFRFLQGGDKVKANVIFRGREIQHTKLAIELL 148
BLAST of CK932727 vs. ExPASy Swiss-Prot
Match: IF3_RHOS4 (Translation initiation factor IF-3 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=infC PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 6.951e-21 Identity = 51/129 (39.53%), Postives = 79/129 (61.24%), Query Frame = 3 Query: 318 IRSNTVRLIDAQQNMVGIVPKSEAIQMAEDAELDLVIVSPDADPPVVRAMDYNKYRYEXXXXXXXXXXXSAANRMDLQELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELI 704 IR VRLI A +G+V S A+ MAE+A LDLV +SP+A+PPV + MD+ K++YE + ++++E+K D HDY V++++ KFL +GDKVKV + +GRE + + +EL+ Sbjct: 22 IRCPEVRLIGANGENIGVVTPSRAMMMAEEAGLDLVEISPNAEPPVCKIMDFGKFKYE--QQKREAEARKKQHIIEIKEIKFRPGTDTHDYDVKMRSVLKFLSEGDKVKVTLRFRGREMAHQELGLELL 148 The following BLAST results are available for this feature:
BLAST of CK932727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 292
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Sequences
The
following sequences are available for this feature:
EST sequence >CK932727 ID=CK932727; Name=CK932727; organism=Citrus sinensis; type=EST; length=704bpback to top |