CK932768

Overview
NameCK932768
Unique NameCK932768
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932768 vs. ExPASy Swiss-Prot
Match: GRP2_ARATH (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.896e-18
Identity = 41/72 (56.94%), Postives = 56/72 (77.78%), Query Frame = 2
Query:    2 GGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 217
            GGL+W T D+SL +AF+ +GD++++K+I DRETGRSRGFGFV F DE +   AI  M+G+ L+GR+I VN A
Sbjct:   40 GGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111          
BLAST of CK932768 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.420e-15
Identity = 35/73 (47.95%), Postives = 54/73 (73.97%), Query Frame = 2
Query:    2 GGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 220
            G L+W   D +L E FS  G+++++K++ DR++GRSRGFGFVT+   K + DAI+ +NG +LDGR+I V+ A+
Sbjct:  212 GNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAE 284          
BLAST of CK932768 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.423e-15
Identity = 36/73 (49.32%), Postives = 50/73 (68.49%), Query Frame = 2
Query:    2 GGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 220
            G + W   D+ L + FS +G ++ ++++ DRETGRSRGFGFVT   E  M DAI  ++GQ+LDGR I VN A+
Sbjct:  235 GNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAE 307          
BLAST of CK932768 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.423e-15
Identity = 35/73 (47.95%), Postives = 54/73 (73.97%), Query Frame = 2
Query:    2 GGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 220
            G L+W   D +L E FS  G+++++K++ DR++GRSRGFGFVT+   K + DAI+ +NG +LDGR+I V+ A+
Sbjct:  213 GNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAE 285          
BLAST of CK932768 vs. ExPASy Swiss-Prot
Match: CIRBP_XENTR (Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.049e-15
Identity = 36/72 (50.00%), Postives = 52/72 (72.22%), Query Frame = 2
Query:    2 GGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 217
            GGL + TT+ SL + FS YG + E  ++ DRE+ RSRGFGFVTF + +  +DA+  MNG+++DGR I V++A
Sbjct:   11 GGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of CK932768 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.202e-14
Identity = 35/73 (47.95%), Postives = 49/73 (67.12%), Query Frame = 2
Query:    2 GGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 220
            G L W    S L + FS +G ++ +++++DRETGRSRGFGFVT   E  + DAI  ++GQ LDGR + VN A+
Sbjct:  154 GNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAE 226          
BLAST of CK932768 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.570e-14
Identity = 35/73 (47.95%), Postives = 50/73 (68.49%), Query Frame = 2
Query:    2 GGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 220
            G L W   +  L + FS +G ++E++++ DRETGRSRGFGFVT  D   + +AI  ++GQNL+GR I VN A+
Sbjct:  249 GNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAE 321          
BLAST of CK932768 vs. ExPASy Swiss-Prot
Match: CIRBP_PONAB (Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.570e-14
Identity = 37/72 (51.39%), Postives = 51/72 (70.83%), Query Frame = 2
Query:    2 GGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 217
            GGL++ T + SL + FS YG I E  ++ DRET RSRGFGFVTF +    +DA+  MNG+++DGR I V++A
Sbjct:   11 GGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of CK932768 vs. ExPASy Swiss-Prot
Match: CIRBP_HUMAN (Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.570e-14
Identity = 37/72 (51.39%), Postives = 51/72 (70.83%), Query Frame = 2
Query:    2 GGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 217
            GGL++ T + SL + FS YG I E  ++ DRET RSRGFGFVTF +    +DA+  MNG+++DGR I V++A
Sbjct:   11 GGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of CK932768 vs. ExPASy Swiss-Prot
Match: CIRBP_RANCA (Cold-inducible RNA-binding protein OS=Rana catesbeiana GN=cirbp PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.678e-14
Identity = 37/72 (51.39%), Postives = 50/72 (69.44%), Query Frame = 2
Query:    2 GGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 217
            GGL++ T +  L   FS YG I E  ++ DRET RSRGFGFVTF + +  +DA+ GMNG+ +DGR I V++A
Sbjct:   11 GGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGMNGKTVDGRQIRVDQA 82          
The following BLAST results are available for this feature:
BLAST of CK932768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
GRP2_ARATH8.896e-1856.94Glycine-rich RNA-binding protein 2, mitochondrial ... [more]
ROC2_NICSY1.420e-1547.9529 kDa ribonucleoprotein B, chloroplastic OS=Nicot... [more]
ROC4_NICSY2.423e-1549.3231 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC2_NICPL2.423e-1547.9531 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
CIRBP_XENTR7.049e-1550.00Cold-inducible RNA-binding protein OS=Xenopus trop... [more]
ROC1_SPIOL1.202e-1447.9528 kDa ribonucleoprotein, chloroplastic OS=Spinaci... [more]
ROC3_ARATH1.570e-1447.9531 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
CIRBP_PONAB1.570e-1451.39Cold-inducible RNA-binding protein OS=Pongo abelii... [more]
CIRBP_HUMAN1.570e-1451.39Cold-inducible RNA-binding protein OS=Homo sapiens... [more]
CIRBP_RANCA2.678e-1451.39Cold-inducible RNA-binding protein OS=Rana catesbe... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004529_G10 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IIF_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932768 ID=CK932768; Name=CK932768; organism=Citrus sinensis; type=EST; length=596bp
AGGCGGCCTGGCCTGGGCCACCACTGACAGCTCTCTCCATGAGGCCTTCA
GTGCTTACGGCGATATCCTTGAATCGAAAATTATTAACGATCGCGAGACT
GGAAGATCCAGAGGATTTGGATTCGTTACCTTCCGCGATGAGAAGTCGAT
GAGGGACGCAATCGAAGGCATGAACGGCCAGAATCTGGACGGCCGTAACA
TAACAGTCAACGAGGCCCAGTCCCGTGGAAGCGGTGGCGGTGGCGGTGGC
GGTTACGGAAGCCGTGGCGGTGGTGGATATGGAGGTGGTGGACGCCGTGA
AAGTGGTGGTGGCGGTGGATACGGTGGGAGCCGCGGATACGGGGGTGGCG
GCGGTGGATATGGTGGCCGCCGTGAAGGTGGTTACAGCCGTGACGGTGGA
TATGGCGGTGATGGTGGTTCCCGATACTCAAGGAGCGGTGCTTCTGATGG
CGGTAGCTGGAGGAACTAGGGTTTTGTAGGATAAATTAGGAGTTGAATGT
TACCGTTCCGTGTTTTGATATTTTCCTTGGGTTATGATGTGTCGTTTTGA
TCNNNTCCTGTTATCCTGTGTTGTTTCGTTCTCCCTGTTTGGTTAA
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