CK932768
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK932768 vs. ExPASy Swiss-Prot
Match: GRP2_ARATH (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 8.896e-18 Identity = 41/72 (56.94%), Postives = 56/72 (77.78%), Query Frame = 2 Query: 2 GGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 217 GGL+W T D+SL +AF+ +GD++++K+I DRETGRSRGFGFV F DE + AI M+G+ L+GR+I VN A Sbjct: 40 GGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111
BLAST of CK932768 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.420e-15 Identity = 35/73 (47.95%), Postives = 54/73 (73.97%), Query Frame = 2 Query: 2 GGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 220 G L+W D +L E FS G+++++K++ DR++GRSRGFGFVT+ K + DAI+ +NG +LDGR+I V+ A+ Sbjct: 212 GNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAE 284
BLAST of CK932768 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 2.423e-15 Identity = 36/73 (49.32%), Postives = 50/73 (68.49%), Query Frame = 2 Query: 2 GGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 220 G + W D+ L + FS +G ++ ++++ DRETGRSRGFGFVT E M DAI ++GQ+LDGR I VN A+ Sbjct: 235 GNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAE 307
BLAST of CK932768 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 2.423e-15 Identity = 35/73 (47.95%), Postives = 54/73 (73.97%), Query Frame = 2 Query: 2 GGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 220 G L+W D +L E FS G+++++K++ DR++GRSRGFGFVT+ K + DAI+ +NG +LDGR+I V+ A+ Sbjct: 213 GNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAE 285
BLAST of CK932768 vs. ExPASy Swiss-Prot
Match: CIRBP_XENTR (Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 7.049e-15 Identity = 36/72 (50.00%), Postives = 52/72 (72.22%), Query Frame = 2 Query: 2 GGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 217 GGL + TT+ SL + FS YG + E ++ DRE+ RSRGFGFVTF + + +DA+ MNG+++DGR I V++A Sbjct: 11 GGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of CK932768 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.202e-14 Identity = 35/73 (47.95%), Postives = 49/73 (67.12%), Query Frame = 2 Query: 2 GGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 220 G L W S L + FS +G ++ +++++DRETGRSRGFGFVT E + DAI ++GQ LDGR + VN A+ Sbjct: 154 GNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAE 226
BLAST of CK932768 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.570e-14 Identity = 35/73 (47.95%), Postives = 50/73 (68.49%), Query Frame = 2 Query: 2 GGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 220 G L W + L + FS +G ++E++++ DRETGRSRGFGFVT D + +AI ++GQNL+GR I VN A+ Sbjct: 249 GNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAE 321
BLAST of CK932768 vs. ExPASy Swiss-Prot
Match: CIRBP_PONAB (Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.570e-14 Identity = 37/72 (51.39%), Postives = 51/72 (70.83%), Query Frame = 2 Query: 2 GGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 217 GGL++ T + SL + FS YG I E ++ DRET RSRGFGFVTF + +DA+ MNG+++DGR I V++A Sbjct: 11 GGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of CK932768 vs. ExPASy Swiss-Prot
Match: CIRBP_HUMAN (Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.570e-14 Identity = 37/72 (51.39%), Postives = 51/72 (70.83%), Query Frame = 2 Query: 2 GGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 217 GGL++ T + SL + FS YG I E ++ DRET RSRGFGFVTF + +DA+ MNG+++DGR I V++A Sbjct: 11 GGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of CK932768 vs. ExPASy Swiss-Prot
Match: CIRBP_RANCA (Cold-inducible RNA-binding protein OS=Rana catesbeiana GN=cirbp PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 2.678e-14 Identity = 37/72 (51.39%), Postives = 50/72 (69.44%), Query Frame = 2 Query: 2 GGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 217 GGL++ T + L FS YG I E ++ DRET RSRGFGFVTF + + +DA+ GMNG+ +DGR I V++A Sbjct: 11 GGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGMNGKTVDGRQIRVDQA 82 The following BLAST results are available for this feature:
BLAST of CK932768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 42
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Sequences
The
following sequences are available for this feature:
EST sequence >CK932768 ID=CK932768; Name=CK932768; organism=Citrus sinensis; type=EST; length=596bpback to top |