CK932773

Overview
NameCK932773
Unique NameCK932773
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length397
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK932773 vs. ExPASy Swiss-Prot
Match: UBIQ_PANTR (Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.776e-12
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 3 
Query:    3 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 104
            LIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CK932773 vs. ExPASy Swiss-Prot
Match: UBIQ_OPHHA (Ubiquitin OS=Ophiophagus hannah PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.776e-12
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 3 
Query:    3 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 104
            LIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CK932773 vs. ExPASy Swiss-Prot
Match: UBIQ_NEUCR (Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.776e-12
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 3 
Query:    3 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 104
            LIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CK932773 vs. ExPASy Swiss-Prot
Match: UBIQ_MOUSE (Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.776e-12
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 3 
Query:    3 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 104
            LIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CK932773 vs. ExPASy Swiss-Prot
Match: UBIQ_MANSE (Ubiquitin OS=Manduca sexta PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.776e-12
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 3 
Query:    3 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 104
            LIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CK932773 vs. ExPASy Swiss-Prot
Match: UBIQ_MACFA (Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.776e-12
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 3 
Query:    3 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 104
            LIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CK932773 vs. ExPASy Swiss-Prot
Match: UBIQ_KLULA (Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.776e-12
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 3 
Query:    3 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 104
            LIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CK932773 vs. ExPASy Swiss-Prot
Match: UBIQ_ICTPU (Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.776e-12
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 3 
Query:    3 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 104
            LIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CK932773 vs. ExPASy Swiss-Prot
Match: UBIQ_HUMAN (Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.776e-12
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 3 
Query:    3 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 104
            LIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CK932773 vs. ExPASy Swiss-Prot
Match: UBIQ_HORSE (Ubiquitin OS=Equus caballus GN=UBB PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.776e-12
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 3 
Query:    3 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 104
            LIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of CK932773 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
UBIQ_PANTR8.776e-1297.06Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2[more]
UBIQ_OPHHA8.776e-1297.06Ubiquitin OS=Ophiophagus hannah PE=3 SV=1[more]
UBIQ_NEUCR8.776e-1297.06Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1[more]
UBIQ_MOUSE8.776e-1297.06Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1[more]
UBIQ_MANSE8.776e-1297.06Ubiquitin OS=Manduca sexta PE=3 SV=1[more]
UBIQ_MACFA8.776e-1297.06Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=... [more]
UBIQ_KLULA8.776e-1297.06Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=... [more]
UBIQ_ICTPU8.776e-1297.06Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV... [more]
UBIQ_HUMAN8.776e-1297.06Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1[more]
UBIQ_HORSE8.776e-1297.06Ubiquitin OS=Equus caballus GN=UBB PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionCGF1004529_H05 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IIF_H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932773 ID=CK932773; Name=CK932773; organism=Citrus sinensis; type=EST; length=397bp
GGTTGATCTTTGCTGGAAAACAACTTGAGGATGGAAGGACTCTTGCTGAT
TACAACATCCAGAAGGAGTCCACTCTGCATCTTGTGCTCCGACTCCGTGG
AGGTTTCCGAGTTTGGTCATCTGGGTGTGTGTGTGTCTTATTTGCTTCGG
TTTGTCTTGGTTAATGTTTGCTGGCTATTGGTGAAATAGCTTAAATAACT
ATTTGAAGTTTATTTTGGTTTGTGGTAGTTGAACTCTGTTTCTAAGATAT
TGATATGGTCCCACTAACGTCCCATTATAATATCTAAGAATCTTTTTCTT
GAATAAATACATGTTTAATGTGNNNAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAACAAAAAAAAAAAAACCCAAAAAAAAAAAAAA
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