CK932779

Overview
NameCK932779
Unique NameCK932779
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK932779 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.594e-14
Identity = 57/136 (41.91%), Postives = 72/136 (52.94%), Query Frame = 3 
Query:  267 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPL---GEVTDPLYPGGSFDPL 665
            PP YLTGE  GD G+D AGL+ADP TF + +  EV HCR +ML  +GC+ PELL       G   WF    QI+ +  +D+          +  A+ A QVV    +E +R  GG L    E  D  YPG  FDPL
Sbjct:  380 PPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL-------GNGAWF----QIWDK--VDF----------NRFAVVALQVV--APLEYWRGNGGFLWNDEETVDQSYPG--FDPL 488

HSP 2 Score: 74.3294 bits (181), Expect = 6.219e-13
Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = 3 
Query:  258 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQI 485
            + EPP+ LTGE+P D G+D   L+ADP+ +A+ R  EV H R AML  +GC+ PELL       G+  WF+AG  +
Sbjct:  193 NAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSV 261
The following BLAST results are available for this feature:
BLAST of CK932779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
LH18_EUGGR9.594e-1441.91Light-harvesting complex I LH38 proteins (Fragment... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004529_F07 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IIF_F07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932779 ID=CK932779; Name=CK932779; organism=Citrus sinensis; type=EST; length=665bp
GGGGACAACCAACACCTTCTCTTGCTTACACAGCTTCTATTGCTTACCCA
GCTTCTGCTTCTCAATTAAATTCCTCAATGGCAACCTCAACAATGGCTCT
CTCCTCATCATTCGTCGGCAAGGCCGTGAACCTCGCCCCTTCAGGCAATG
AGCTGAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCT
GTTTCTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGTCAAGTACTTGGG
CCCACTCTCTGGCGAGCCCCCAAGCTACTTGACTGGTGAGTTCCCTGGCG
ACTACGGTTGGGACACTGCCGGGCTTTCAGCTGACCCAGAAACCTTTGCC
AAGAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGC
TCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCG
GTGAGGCTGTGTGGTTCAAGGCGGGAGCTCAGATCTTCAGCGAGGGCGGG
CTTGACTACTTGGGAAACCCAAGCTTGATCCACGCCCAGAGCATCTTGGC
CATCTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTACAGAA
TTGCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGC
AGCTTTGATCCATTG
back to top