CK932825

Overview
NameCK932825
Unique NameCK932825
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length465
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932825 vs. ExPASy Swiss-Prot
Match: EF1A_PODAN (Elongation factor 1-alpha OS=Podospora anserina GN=TEF PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.715e-18
Identity = 42/53 (79.25%), Postives = 48/53 (90.57%), Query Frame = 1
Query:    7 PKFFKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 165
            PKF K+GDA +VKM+P+KPM VE F++YPPLGRFAVRDMRQTVAVGVIK VEK
Sbjct:  390 PKFIKSGDAAIVKMVPSKPMCVEAFTEYPPLGRFAVRDMRQTVAVGVIKKVEK 442          
BLAST of CK932825 vs. ExPASy Swiss-Prot
Match: EF1A_ONCVO (Elongation factor 1-alpha OS=Onchocerca volvulus PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.715e-18
Identity = 41/55 (74.55%), Postives = 50/55 (90.91%), Query Frame = 1
Query:    7 PKFFKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 171
            PK  K+GDAG++ +IPTKP+ VETF++YPPLGRFAVRDMRQTVAVGVIKNV+K +
Sbjct:  391 PKSLKSGDAGIIDLIPTKPLCVETFTEYPPLGRFAVRDMRQTVAVGVIKNVDKSE 445          
BLAST of CK932825 vs. ExPASy Swiss-Prot
Match: EF1A_NEUCR (Elongation factor 1-alpha OS=Neurospora crassa GN=tef-1 PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 1.715e-18
Identity = 43/53 (81.13%), Postives = 48/53 (90.57%), Query Frame = 1
Query:    7 PKFFKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 165
            PKF K+GDA +VKMIP+KPM VE F+DYPPLGRFAVRDMRQTVAVGVIK V+K
Sbjct:  390 PKFIKSGDAAIVKMIPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKAVDK 442          
BLAST of CK932825 vs. ExPASy Swiss-Prot
Match: EF1A_CHICK (Elongation factor 1-alpha 1 OS=Gallus gallus GN=EEF1A PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.715e-18
Identity = 44/54 (81.48%), Postives = 48/54 (88.89%), Query Frame = 1
Query:    7 PKFFKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 168
            PKF K+GDA +V MIP KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK V+KK
Sbjct:  391 PKFLKSGDAAIVDMIPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444          
BLAST of CK932825 vs. ExPASy Swiss-Prot
Match: EF1A_ASHGO (Elongation factor 1-alpha OS=Ashbya gossypii GN=TEF PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.715e-18
Identity = 43/55 (78.18%), Postives = 47/55 (85.45%), Query Frame = 1
Query:    7 PKFFKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 171
            PKF K GDA MVK +P+KPM VE F+DYPPLGRFAVRDMRQTVAVGVIK+V K D
Sbjct:  389 PKFLKAGDAAMVKFVPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKSVVKSD 443          
BLAST of CK932825 vs. ExPASy Swiss-Prot
Match: EF1A_ABSGL (Elongation factor 1-alpha OS=Absidia glauca GN=TEF-1 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.715e-18
Identity = 43/55 (78.18%), Postives = 49/55 (89.09%), Query Frame = 1
Query:    7 PKFFKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 171
            PKF K+GD+ +VKMIP+KPM VE ++DYPPLGRFAVRDMRQTVAVGVIK VEK D
Sbjct:  389 PKFVKSGDSAIVKMIPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVD 443          
BLAST of CK932825 vs. ExPASy Swiss-Prot
Match: EF1A3_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-3 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.240e-18
Identity = 42/55 (76.36%), Postives = 49/55 (89.09%), Query Frame = 1
Query:    7 PKFFKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 171
            PKF K+GD+ +VKM+P+KPM VE ++DYPPLGRFAVRDMRQTVAVGVIK VEK D
Sbjct:  388 PKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVD 442          
BLAST of CK932825 vs. ExPASy Swiss-Prot
Match: EF1A3_HUMAN (Putative elongation factor 1-alpha-like 3 OS=Homo sapiens GN=EEF1AL3 PE=5 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.240e-18
Identity = 43/54 (79.63%), Postives = 48/54 (88.89%), Query Frame = 1
Query:    7 PKFFKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 168
            PKF K+GDA +V M+P KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK V+KK
Sbjct:  391 PKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444          
BLAST of CK932825 vs. ExPASy Swiss-Prot
Match: EF1A2_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-2 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.240e-18
Identity = 42/55 (76.36%), Postives = 49/55 (89.09%), Query Frame = 1
Query:    7 PKFFKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 171
            PKF K+GD+ +VKM+P+KPM VE ++DYPPLGRFAVRDMRQTVAVGVIK VEK D
Sbjct:  389 PKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVD 443          
BLAST of CK932825 vs. ExPASy Swiss-Prot
Match: EF1A1_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-1 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.240e-18
Identity = 42/55 (76.36%), Postives = 49/55 (89.09%), Query Frame = 1
Query:    7 PKFFKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 171
            PKF K+GD+ +VKM+P+KPM VE ++DYPPLGRFAVRDMRQTVAVGVIK VEK D
Sbjct:  389 PKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVD 443          
The following BLAST results are available for this feature:
BLAST of CK932825 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
EF1A_PODAN1.715e-1879.25Elongation factor 1-alpha OS=Podospora anserina GN... [more]
EF1A_ONCVO1.715e-1874.55Elongation factor 1-alpha OS=Onchocerca volvulus P... [more]
EF1A_NEUCR1.715e-1881.13Elongation factor 1-alpha OS=Neurospora crassa GN=... [more]
EF1A_CHICK1.715e-1881.48Elongation factor 1-alpha 1 OS=Gallus gallus GN=EE... [more]
EF1A_ASHGO1.715e-1878.18Elongation factor 1-alpha OS=Ashbya gossypii GN=TE... [more]
EF1A_ABSGL1.715e-1878.18Elongation factor 1-alpha OS=Absidia glauca GN=TEF... [more]
EF1A3_RHIRA2.240e-1876.36Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A3_HUMAN2.240e-1879.63Putative elongation factor 1-alpha-like 3 OS=Homo ... [more]
EF1A2_RHIRA2.240e-1876.36Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A1_RHIRA2.240e-1876.36Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004529_A03 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IIF_A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932825 ID=CK932825; Name=CK932825; organism=Citrus sinensis; type=EST; length=465bp
GGGGAGCCCAAGTTCTTTAAGAATGGAGATGCTGGAATGGTTAAGATGAT
TCCCACCAAGCCCATGGTTGTTGAAACCTTCTCTGACTACCCACCTCTTG
GTCGTTTTGCCGTTAGGGACATGCGTCAGACTGTTGCTGTTGGTGTGATT
AAGAATGTTGAAAAGAAGGATCCAACAGGTGCCAAGGTCACCAAGTCTGC
AGCCAAGAAGAAGTGAGGAGTTTTTTGGGATCTATCTGCTATAGTTAGCT
TTTATTTTCTCTGTTTATGCTATTTTTGTCGTGTTTTAGTTTGTTTTACG
GGACTTCATTTTAATTCTCTGAATTTGGTTTTATATCAGAGTTTTTTTTT
GGTAAGTTGATAAACCAGTTTTTGGATGTCAAACATTTTGTTTCAAGATT
AGCCGTTAGTGCTCGATTTTGAAAATTTAGTCGGTGCCCAAAAAAAAAAA
AAAAAAAAAAAAAAA
back to top