CK932825

Overview
NameCK932825
Unique NameCK932825
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length465
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932825 vs. ExPASy Swiss-Prot
Match: EF1A2_SCHPO (Elongation factor 1-alpha-B/C OS=Schizosaccharomyces pombe GN=tef1b PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.234e-17
Identity = 42/56 (75.00%), Postives = 47/56 (83.93%), Query Frame = 1
Query:    7 PKFFKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDP 174
            PKF K+GDA + KM+P+KPM VE F+DY PLGRFAVRDMRQTVAVGVIK VEK  P
Sbjct:  389 PKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAVEKVAP 444          
BLAST of CK932825 vs. ExPASy Swiss-Prot
Match: EF1A1_SCHPO (Elongation factor 1-alpha-A OS=Schizosaccharomyces pombe GN=tef1a PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 3.234e-17
Identity = 42/56 (75.00%), Postives = 47/56 (83.93%), Query Frame = 1
Query:    7 PKFFKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDP 174
            PKF K+GDA + KM+P+KPM VE F+DY PLGRFAVRDMRQTVAVGVIK VEK  P
Sbjct:  389 PKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAVEKVAP 444          
BLAST of CK932825 vs. ExPASy Swiss-Prot
Match: EF1A_CRYNE (Elongation factor 1-alpha OS=Cryptococcus neoformans GN=TEF1 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 4.224e-17
Identity = 39/55 (70.91%), Postives = 49/55 (89.09%), Query Frame = 1
Query:    7 PKFFKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 171
            PKF K+GDA +VK++  KP+ VET++DYPPLGRFAVRDMRQTVAVGVIK+V+K +
Sbjct:  389 PKFVKSGDAAIVKLVAQKPLCVETYADYPPLGRFAVRDMRQTVAVGVIKSVDKTE 443          
BLAST of CK932825 vs. ExPASy Swiss-Prot
Match: EF1A_TRYBB (Elongation factor 1-alpha OS=Trypanosoma brucei brucei GN=TEF1 PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 9.410e-17
Identity = 40/55 (72.73%), Postives = 46/55 (83.64%), Query Frame = 1
Query:    7 PKFFKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 171
            PK  K+GDA +V+M+P KPM VE F+DY PLGRFAVRDMRQTVAVG+IK V KKD
Sbjct:  379 PKSIKSGDAAIVRMVPQKPMCVEVFNDYAPLGRFAVRDMRQTVAVGIIKAVTKKD 433          
BLAST of CK932825 vs. ExPASy Swiss-Prot
Match: EF1A_HYDAT (Elongation factor 1-alpha OS=Hydra attenuata PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.576e-16
Identity = 39/54 (72.22%), Postives = 46/54 (85.19%), Query Frame = 1
Query:    4 EPKFFKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 165
            EPK  K+GDA ++ +IP+K M VE+FS YPPLGRFAVRDMRQTVAVGVIK V+K
Sbjct:  392 EPKMVKSGDAAIINLIPSKGMCVESFSQYPPLGRFAVRDMRQTVAVGVIKEVDK 445          
BLAST of CK932825 vs. ExPASy Swiss-Prot
Match: EF1A_ENTHI (Elongation factor 1-alpha OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.576e-16
Identity = 36/53 (67.92%), Postives = 47/53 (88.68%), Query Frame = 1
Query:    1 GEPKFFKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 159
            GEP++ KNGD+ +VK++PTKP+ VE F+ +PPLGRFAVRDM+QTVAVGV+K V
Sbjct:  376 GEPEYIKNGDSALVKIVPTKPLCVEEFAKFPPLGRFAVRDMKQTVAVGVVKAV 428          
BLAST of CK932825 vs. ExPASy Swiss-Prot
Match: EF1A_CRYPV (Elongation factor 1-alpha OS=Cryptosporidium parvum PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.576e-16
Identity = 39/55 (70.91%), Postives = 46/55 (83.64%), Query Frame = 1
Query:    7 PKFFKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 171
            PK  K+GDA +V M P KP+ VE F+DYPPLGRFAVRDM+QTVAVGVIK+V KK+
Sbjct:  375 PKLIKSGDAALVVMQPLKPLCVEAFTDYPPLGRFAVRDMKQTVAVGVIKSVTKKE 429          
BLAST of CK932825 vs. ExPASy Swiss-Prot
Match: EF1A1_DROME (Elongation factor 1-alpha 1 OS=Drosophila melanogaster GN=Ef1alpha48D PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 3.576e-16
Identity = 38/55 (69.09%), Postives = 46/55 (83.64%), Query Frame = 1
Query:    7 PKFFKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 171
            PKF K+GDA +V ++P+KP+ VE F ++PPLGRFAVRDMRQTVAVGVIK V  KD
Sbjct:  391 PKFIKSGDAAIVNLVPSKPLCVEAFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKD 445          
BLAST of CK932825 vs. ExPASy Swiss-Prot
Match: EF1A1_EUPCR (Elongation factor 1-alpha 1 OS=Euplotes crassus GN=EFA1 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.670e-16
Identity = 37/54 (68.52%), Postives = 47/54 (87.04%), Query Frame = 1
Query:    7 PKFFKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 168
            PKF K GDAG++++ P+KP+ VETF+ Y PLGRFAVRDMRQTVAVGVI+ ++KK
Sbjct:  379 PKFLKAGDAGLIRLSPSKPLCVETFATYAPLGRFAVRDMRQTVAVGVIQEIKKK 432          
BLAST of CK932825 vs. ExPASy Swiss-Prot
Match: EF1A_DICDI (Elongation factor 1-alpha OS=Dictyostelium discoideum GN=eef1a1 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 6.099e-16
Identity = 38/52 (73.08%), Postives = 46/52 (88.46%), Query Frame = 1
Query:   19 KNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDP 174
            KNGDA MV++ P++PM VE+F++YPPLGRFAVRDMRQTVAVGVIK+  KK P
Sbjct:  386 KNGDAAMVELTPSRPMCVESFTEYPPLGRFAVRDMRQTVAVGVIKSTVKKAP 437          
The following BLAST results are available for this feature:
BLAST of CK932825 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
EF1A2_SCHPO3.234e-1775.00Elongation factor 1-alpha-B/C OS=Schizosaccharomyc... [more]
EF1A1_SCHPO3.234e-1775.00Elongation factor 1-alpha-A OS=Schizosaccharomyces... [more]
EF1A_CRYNE4.224e-1770.91Elongation factor 1-alpha OS=Cryptococcus neoforma... [more]
EF1A_TRYBB9.410e-1772.73Elongation factor 1-alpha OS=Trypanosoma brucei br... [more]
EF1A_HYDAT3.576e-1672.22Elongation factor 1-alpha OS=Hydra attenuata PE=2 ... [more]
EF1A_ENTHI3.576e-1667.92Elongation factor 1-alpha OS=Entamoeba histolytica... [more]
EF1A_CRYPV3.576e-1670.91Elongation factor 1-alpha OS=Cryptosporidium parvu... [more]
EF1A1_DROME3.576e-1669.09Elongation factor 1-alpha 1 OS=Drosophila melanoga... [more]
EF1A1_EUPCR4.670e-1668.52Elongation factor 1-alpha 1 OS=Euplotes crassus GN... [more]
EF1A_DICDI6.099e-1673.08Elongation factor 1-alpha OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004529_A03 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IIF_A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932825 ID=CK932825; Name=CK932825; organism=Citrus sinensis; type=EST; length=465bp
GGGGAGCCCAAGTTCTTTAAGAATGGAGATGCTGGAATGGTTAAGATGAT
TCCCACCAAGCCCATGGTTGTTGAAACCTTCTCTGACTACCCACCTCTTG
GTCGTTTTGCCGTTAGGGACATGCGTCAGACTGTTGCTGTTGGTGTGATT
AAGAATGTTGAAAAGAAGGATCCAACAGGTGCCAAGGTCACCAAGTCTGC
AGCCAAGAAGAAGTGAGGAGTTTTTTGGGATCTATCTGCTATAGTTAGCT
TTTATTTTCTCTGTTTATGCTATTTTTGTCGTGTTTTAGTTTGTTTTACG
GGACTTCATTTTAATTCTCTGAATTTGGTTTTATATCAGAGTTTTTTTTT
GGTAAGTTGATAAACCAGTTTTTGGATGTCAAACATTTTGTTTCAAGATT
AGCCGTTAGTGCTCGATTTTGAAAATTTAGTCGGTGCCCAAAAAAAAAAA
AAAAAAAAAAAAAAA
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