CK932825

Overview
NameCK932825
Unique NameCK932825
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length465
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932825 vs. ExPASy Swiss-Prot
Match: EF1A_STAMF (Elongation factor 1-alpha OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=tuf PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 9.114e-12
Identity = 29/52 (55.77%), Postives = 42/52 (80.77%), Query Frame = 1
Query:    7 PKFFKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVE 162
            P+F K GDA +V+  P KP+VVE +SD+PPLGRFA+RDM +T+ +GV+ +V+
Sbjct:  378 PQFIKMGDAAIVRFKPIKPLVVEKYSDFPPLGRFAMRDMGKTIGIGVVVDVK 429          
BLAST of CK932825 vs. ExPASy Swiss-Prot
Match: EF1A_THEAC (Elongation factor 1-alpha OS=Thermoplasma acidophilum GN=tuf PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.190e-11
Identity = 32/55 (58.18%), Postives = 41/55 (74.55%), Query Frame = 1
Query:    4 EPKFFKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 168
            +P F KNGD  +VK+IP KP+V+E  S+ P LGRFAVRDM QTVA G   ++EK+
Sbjct:  370 KPDFIKNGDVAIVKVIPDKPLVIEKVSEIPQLGRFAVRDMGQTVAAGQCIDLEKR 424          
BLAST of CK932825 vs. ExPASy Swiss-Prot
Match: EF1A_PYRCJ (Elongation factor 1-alpha OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=tuf PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.652e-11
Identity = 30/53 (56.60%), Postives = 40/53 (75.47%), Query Frame = 1
Query:    4 EPKFFKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVE 162
            +P+F K GD  +VK+ P KP+V E FSD+PPLGRFA+RDM +T+A G I  V+
Sbjct:  385 KPQFIKQGDVAIVKIKPLKPVVAEKFSDFPPLGRFALRDMGRTIAAGQILEVK 437          
BLAST of CK932825 vs. ExPASy Swiss-Prot
Match: EF1A_PYRAR (Elongation factor 1-alpha OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=tuf PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.652e-11
Identity = 30/53 (56.60%), Postives = 40/53 (75.47%), Query Frame = 1
Query:    4 EPKFFKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVE 162
            +P+F K GD  +VK+ P KP+V E FSD+PPLGRFA+RDM +T+A G I  V+
Sbjct:  385 KPQFIKQGDVAIVKIKPLKPVVAEKFSDFPPLGRFALRDMGRTIAAGQILEVK 437          
BLAST of CK932825 vs. ExPASy Swiss-Prot
Match: EF1A_PYRAE (Elongation factor 1-alpha OS=Pyrobaculum aerophilum GN=tuf PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.652e-11
Identity = 30/53 (56.60%), Postives = 40/53 (75.47%), Query Frame = 1
Query:    4 EPKFFKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVE 162
            +P+F K GD  +VK+ P KP+V E FSD+PPLGRFA+RDM +T+A G I  V+
Sbjct:  385 KPQFIKQGDVAIVKIKPLKPVVAEKFSDFPPLGRFALRDMGRTIAAGQILEVK 437          
BLAST of CK932825 vs. ExPASy Swiss-Prot
Match: EF1A_THEPD (Elongation factor 1-alpha OS=Thermofilum pendens (strain Hrk 5) GN=tuf PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.523e-11
Identity = 27/56 (48.21%), Postives = 44/56 (78.57%), Query Frame = 1
Query:    4 EPKFFKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 171
            +P++ K GD+ +V+  P KP+VVE +S++PPLGRFA+RD  +T+A GV+ +V+K +
Sbjct:  376 KPQYIKQGDSAIVRFKPRKPVVVEKYSEFPPLGRFAIRDSGRTIAAGVVIDVKKAE 431          
BLAST of CK932825 vs. ExPASy Swiss-Prot
Match: EF1A_METVS (Elongation factor 1-alpha OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=tuf PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.908e-11
Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = 1
Query:    7 PKFFKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 171
            P F K GDA +VK+IPTKPMV+E+  + P LGRFA+RDM  TVA G+   V  K+
Sbjct:  373 PDFLKAGDAAIVKLIPTKPMVIESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          
BLAST of CK932825 vs. ExPASy Swiss-Prot
Match: EF1A_METVA (Elongation factor 1-alpha OS=Methanococcus vannielii GN=tuf PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.908e-11
Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = 1
Query:    7 PKFFKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 171
            P F K GDA +VK+IPTKPMV+E+  + P LGRFA+RDM  TVA G+   V  K+
Sbjct:  373 PDFLKAGDAAIVKLIPTKPMVIESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          
BLAST of CK932825 vs. ExPASy Swiss-Prot
Match: EF1A_THEVO (Elongation factor 1-alpha OS=Thermoplasma volcanium GN=tuf PE=3 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 7.716e-11
Identity = 31/55 (56.36%), Postives = 40/55 (72.73%), Query Frame = 1
Query:    4 EPKFFKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 168
            +P F K GD  +VK+IP KP+V+E  S+ P LGRFAVRDM QTVA G   ++EK+
Sbjct:  370 KPDFIKTGDIAIVKVIPDKPLVIEKVSEIPQLGRFAVRDMGQTVAAGQCIDLEKR 424          
BLAST of CK932825 vs. ExPASy Swiss-Prot
Match: EF1A_HYPBU (Elongation factor 1-alpha OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=tuf PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.716e-11
Identity = 27/52 (51.92%), Postives = 41/52 (78.85%), Query Frame = 1
Query:    7 PKFFKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVE 162
            P+F K GDA +VK  P KPMV+E +S++P LGRFA+RDM +T+ +G++ +V+
Sbjct:  379 PQFLKAGDAAIVKFKPIKPMVIEKYSEFPQLGRFAMRDMGKTIGIGIVVDVK 430          
The following BLAST results are available for this feature:
BLAST of CK932825 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
EF1A_STAMF9.114e-1255.77Elongation factor 1-alpha OS=Staphylothermus marin... [more]
EF1A_THEAC1.190e-1158.18Elongation factor 1-alpha OS=Thermoplasma acidophi... [more]
EF1A_PYRCJ2.652e-1156.60Elongation factor 1-alpha OS=Pyrobaculum calidifon... [more]
EF1A_PYRAR2.652e-1156.60Elongation factor 1-alpha OS=Pyrobaculum arsenatic... [more]
EF1A_PYRAE2.652e-1156.60Elongation factor 1-alpha OS=Pyrobaculum aerophilu... [more]
EF1A_THEPD4.523e-1148.21Elongation factor 1-alpha OS=Thermofilum pendens (... [more]
EF1A_METVS5.908e-1156.36Elongation factor 1-alpha OS=Methanococcus vanniel... [more]
EF1A_METVA5.908e-1156.36Elongation factor 1-alpha OS=Methanococcus vanniel... [more]
EF1A_THEVO7.716e-1156.36Elongation factor 1-alpha OS=Thermoplasma volcaniu... [more]
EF1A_HYPBU7.716e-1151.92Elongation factor 1-alpha OS=Hyperthermus butylicu... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004529_A03 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IIF_A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932825 ID=CK932825; Name=CK932825; organism=Citrus sinensis; type=EST; length=465bp
GGGGAGCCCAAGTTCTTTAAGAATGGAGATGCTGGAATGGTTAAGATGAT
TCCCACCAAGCCCATGGTTGTTGAAACCTTCTCTGACTACCCACCTCTTG
GTCGTTTTGCCGTTAGGGACATGCGTCAGACTGTTGCTGTTGGTGTGATT
AAGAATGTTGAAAAGAAGGATCCAACAGGTGCCAAGGTCACCAAGTCTGC
AGCCAAGAAGAAGTGAGGAGTTTTTTGGGATCTATCTGCTATAGTTAGCT
TTTATTTTCTCTGTTTATGCTATTTTTGTCGTGTTTTAGTTTGTTTTACG
GGACTTCATTTTAATTCTCTGAATTTGGTTTTATATCAGAGTTTTTTTTT
GGTAAGTTGATAAACCAGTTTTTGGATGTCAAACATTTTGTTTCAAGATT
AGCCGTTAGTGCTCGATTTTGAAAATTTAGTCGGTGCCCAAAAAAAAAAA
AAAAAAAAAAAAAAA
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