CK932833

Overview
NameCK932833
Unique NameCK932833
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932833 vs. ExPASy Swiss-Prot
Match: PALY_RHORB (Phenylalanine ammonia-lyase OS=Rhodotorula rubra GN=PAL PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.992e-15
Identity = 72/255 (28.24%), Postives = 125/255 (49.02%), Query Frame = 1
Query:    4 AMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVF----AYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTV-ENGSPTIPNRIKECRSYPLYRLVREELG-----SNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECL 738
            A A+Y SEL  LANPV+ HVQ AE  NQ +NSL LIS+R+TAEA D+L L+ +T L  + QA+DLR +E       +  V+++ K+     A+ E+       K + K   + + +     + D    AT  +++ L           G+    A+ + + K+A  E+ +   L + V ++      + SP +  +    R+  LY  VREE+G      +   G++  + G    +++ A+  G I   +++ +
Sbjct:  475 AAAAYTSELGHLANPVSTHVQPAEMGNQAINSLALISARRTAEANDVLSLLLATHLYCVLQAVDLRAMEFEHTKAFEPMVTELLKQHFGALATAEVEDK--VRKSIYKRLQQNNSYDLEQRWHDTFSVATGAVVEALA----------GQEVSLASLNAW-KVACAEKAI--ALTRSVRDSFWAAPSSSSPAL--KYLSPRTRVLYSFVREEVGVKARRGDVYLGKQEVTIGTNVSRIYEAIKSGCIAPVLVKMM 712          
BLAST of CK932833 vs. ExPASy Swiss-Prot
Match: PALY_USTMA (Phenylalanine ammonia-lyase OS=Ustilago maydis GN=PAL1 PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.097e-13
Identity = 37/69 (53.62%), Postives = 50/69 (72.46%), Query Frame = 1
Query:    4 AMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLE 210
            A+AS  SEL FL NPV+ HVQSAE  NQ +NSL LIS R+T +A++ L ++ +  L  LCQA+D+R L+
Sbjct:  472 ALASVTSELMFLGNPVSTHVQSAEMANQAINSLALISGRQTLQAIECLSMIQAWSLYLLCQALDIRALQ 540          
The following BLAST results are available for this feature:
BLAST of CK932833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
PALY_RHORB4.992e-1528.24Phenylalanine ammonia-lyase OS=Rhodotorula rubra G... [more]
PALY_USTMA2.097e-1353.62Phenylalanine ammonia-lyase OS=Ustilago maydis GN=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004350_H01 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IVF_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932833 ID=CK932833; Name=CK932833; organism=Citrus sinensis; type=EST; length=759bp
GGGGCTATGGCTTCATATTGTTCCGAGCTCCAATTTCTTGCCAATCCTGT
TACTAACCACGTCCAAAGTGCTGAACAGCACAACCAAGATGTAAACTCCT
TGGGATTGATCTCTTCCAGGAAGACTGCTGAAGCAGTCGACATCCTGAAG
CTCATGTCTTCCACATTCTTGGTAGCGCTTTGCCAGGCTATTGATTTGAG
ACATTTGGAGGAGAATTTGAAGCATACAGTCAAGAATACTGTCAGCCAAG
TAGCTAAGAAAGTCTTAACCGTCGGTGCTAGTGGAGAGCTTCATCCATCA
AGATTCTGTGAGAAGGATCTGCTCAAAGCGGCTGATCGCGAACACGTCTT
TGCATACATTGATGACCCCTGCAGTGCTACCTATCCATTGATGCAAAAGC
TAAGGCAAGTACTTGTTGAGCACGCACTGAACAATGGAGAGAACGAGAAG
ACTGCCAACTCTTCAATCTTCCAGAAGATTGCAGCCTTTGAGGAGGAATT
GAAAACCGTTTTGCCCAAAGAAGTTGAGAACGCCAGGCAGACTGTTGAGA
ATGGAAGTCCAACAATTCCCAACAGGATCAAAGAATGCAGGTCTTACCCT
TTGTACAGGTTAGTGAGGGAGGAGCTCGGGTCTAATTTTCTAACAGGGGA
AAAAGTTACATCGCCCGGCGAGGAATTTGACAAAGTGTTTACAGCAATGT
GCCAGGGCAAGATCATTGATCCAATGCTGGAATGTCTCAGGGAATGGAAT
GGCGCCCCT
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