CK932836

Overview
NameCK932836
Unique NameCK932836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932836 vs. ExPASy Swiss-Prot
Match: RL37A_XENLA (60S ribosomal protein L37a OS=Xenopus laevis GN=rpl37a PE=3 SV=3)

HSP 1 Score: 135.961 bits (341), Expect = 1.489e-31
Identity = 63/88 (71.59%), Postives = 73/88 (82.95%), Query Frame = 1
Query:   88 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSIIRRLRE 351
            M KRTKK GIVGKYGTR+GASLRK +KK+E+SQH+KY C FCGK  +KRKAVGIW C  C K+ AGGA+T NT SAVTV+S IRRL+E
Sbjct:    1 MAKRTKKVGIVGKYGTRFGASLRKMVKKIEISQHAKYTCSFCGKTKMKRKAVGIWHCGSCMKIVAGGAWTYNTTSAVTVKSAIRRLKE 88          
BLAST of CK932836 vs. ExPASy Swiss-Prot
Match: RL37A_RAT (60S ribosomal protein L37a OS=Rattus norvegicus GN=Rpl37a PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 2.539e-31
Identity = 63/88 (71.59%), Postives = 72/88 (81.82%), Query Frame = 1
Query:   88 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSIIRRLRE 351
            M KRTKK GIVGKYGTRYGASLRK +KK+E+SQH+KY C FCGK  +KR+AVGIW C  C K  AGGA+T NT SAVTV+S IRRL+E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKE 88          
BLAST of CK932836 vs. ExPASy Swiss-Prot
Match: RL37A_PONAB (60S ribosomal protein L37a OS=Pongo abelii GN=RPL37A PE=3 SV=3)

HSP 1 Score: 135.191 bits (339), Expect = 2.539e-31
Identity = 63/88 (71.59%), Postives = 72/88 (81.82%), Query Frame = 1
Query:   88 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSIIRRLRE 351
            M KRTKK GIVGKYGTRYGASLRK +KK+E+SQH+KY C FCGK  +KR+AVGIW C  C K  AGGA+T NT SAVTV+S IRRL+E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKE 88          
BLAST of CK932836 vs. ExPASy Swiss-Prot
Match: RL37A_MOUSE (60S ribosomal protein L37a OS=Mus musculus GN=Rpl37a PE=2 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 2.539e-31
Identity = 63/88 (71.59%), Postives = 72/88 (81.82%), Query Frame = 1
Query:   88 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSIIRRLRE 351
            M KRTKK GIVGKYGTRYGASLRK +KK+E+SQH+KY C FCGK  +KR+AVGIW C  C K  AGGA+T NT SAVTV+S IRRL+E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKE 88          
BLAST of CK932836 vs. ExPASy Swiss-Prot
Match: RL37A_HUMAN (60S ribosomal protein L37a OS=Homo sapiens GN=RPL37A PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 2.539e-31
Identity = 63/88 (71.59%), Postives = 72/88 (81.82%), Query Frame = 1
Query:   88 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSIIRRLRE 351
            M KRTKK GIVGKYGTRYGASLRK +KK+E+SQH+KY C FCGK  +KR+AVGIW C  C K  AGGA+T NT SAVTV+S IRRL+E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKE 88          
BLAST of CK932836 vs. ExPASy Swiss-Prot
Match: RL37A_DICDI (60S ribosomal protein L37a OS=Dictyostelium discoideum GN=rpl37A PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.539e-31
Identity = 62/88 (70.45%), Postives = 72/88 (81.82%), Query Frame = 1
Query:   88 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSIIRRLRE 351
            M KRTKK G+VGKYGTRYGASLRKQ+KKME++QH  Y C FCGK AV+R +VGIW C  C KV AGGA+T++TA+  TVRS IRRLRE
Sbjct:    1 MAKRTKKVGVVGKYGTRYGASLRKQVKKMEITQHGTYTCSFCGKDAVRRSSVGIWKCNGCRKVLAGGAWTMSTAAGATVRSTIRRLRE 88          
BLAST of CK932836 vs. ExPASy Swiss-Prot
Match: RL37A_BOVIN (60S ribosomal protein L37a OS=Bos taurus GN=RPL37A PE=3 SV=3)

HSP 1 Score: 135.191 bits (339), Expect = 2.539e-31
Identity = 63/88 (71.59%), Postives = 72/88 (81.82%), Query Frame = 1
Query:   88 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSIIRRLRE 351
            M KRTKK GIVGKYGTRYGASLRK +KK+E+SQH+KY C FCGK  +KR+AVGIW C  C K  AGGA+T NT SAVTV+S IRRL+E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKE 88          
BLAST of CK932836 vs. ExPASy Swiss-Prot
Match: RL43_ASHGO (60S ribosomal protein L43 OS=Ashbya gossypii GN=RPL43 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.317e-31
Identity = 62/92 (67.39%), Postives = 71/92 (77.17%), Query Frame = 1
Query:   88 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSIIRRLREQTES 363
            M KRTKK GI GKYG RYG+SLR+Q+KK+EV QH++Y C FCGK AVKR A GIW C  C K  AGGAYT +TA+A TVRS IRRLRE  E+
Sbjct:    1 MAKRTKKVGITGKYGVRYGSSLRRQVKKLEVQQHARYDCSFCGKKAVKRGAAGIWNCSSCKKTVAGGAYTFSTAAAATVRSTIRRLREMAEA 92          
BLAST of CK932836 vs. ExPASy Swiss-Prot
Match: RL37A_ICTPU (60S ribosomal protein L37a OS=Ictalurus punctatus GN=rpl37a PE=3 SV=3)

HSP 1 Score: 134.42 bits (337), Expect = 4.332e-31
Identity = 62/91 (68.13%), Postives = 73/91 (80.22%), Query Frame = 1
Query:   88 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSIIRRLREQTE 360
            M KRTKK GIVGKYGTRYGASLRK +KK+E+SQH+KY C FCGK  +KR+AVGIW C  C K  AGGA+T NT SAVTV+S I+RL+E  +
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIKRLKEMKD 91          
BLAST of CK932836 vs. ExPASy Swiss-Prot
Match: RL37A_CAEEL (60S ribosomal protein L37a OS=Caenorhabditis elegans GN=rpl-43 PE=2 SV=3)

HSP 1 Score: 134.42 bits (337), Expect = 4.332e-31
Identity = 64/91 (70.33%), Postives = 70/91 (76.92%), Query Frame = 1
Query:   88 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSIIRRLREQTE 360
            M KRTKK GIVGKYGTRYGASLRK  KK+EV+QHS+Y C FCGK A+KRKA GIW C  C KV AGGAY   T +A TVRS IRRLR+  E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKMAKKLEVAQHSRYTCSFCGKEAMKRKATGIWNCAKCHKVVAGGAYVYGTVTAATVRSTIRRLRDLKE 91          
The following BLAST results are available for this feature:
BLAST of CK932836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
RL37A_XENLA1.489e-3171.5960S ribosomal protein L37a OS=Xenopus laevis GN=rp... [more]
RL37A_RAT2.539e-3171.5960S ribosomal protein L37a OS=Rattus norvegicus GN... [more]
RL37A_PONAB2.539e-3171.5960S ribosomal protein L37a OS=Pongo abelii GN=RPL3... [more]
RL37A_MOUSE2.539e-3171.5960S ribosomal protein L37a OS=Mus musculus GN=Rpl3... [more]
RL37A_HUMAN2.539e-3171.5960S ribosomal protein L37a OS=Homo sapiens GN=RPL3... [more]
RL37A_DICDI2.539e-3170.4560S ribosomal protein L37a OS=Dictyostelium discoi... [more]
RL37A_BOVIN2.539e-3171.5960S ribosomal protein L37a OS=Bos taurus GN=RPL37A... [more]
RL43_ASHGO3.317e-3167.3960S ribosomal protein L43 OS=Ashbya gossypii GN=RP... [more]
RL37A_ICTPU4.332e-3168.1360S ribosomal protein L37a OS=Ictalurus punctatus ... [more]
RL37A_CAEEL4.332e-3170.3360S ribosomal protein L37a OS=Caenorhabditis elega... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004350_H04 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IVF_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932836 ID=CK932836; Name=CK932836; organism=Citrus sinensis; type=EST; length=613bp
GGGGGGGGTTAGGGTTTCTTTTGTCGCTCTACGTCTCAAACAGCCGCTGC
TTGTTGAAGAGCTACAGACCTTCGCTCCAACGCCACAATGACCAAACGTA
CGAAGAAGGCCGGAATCGTTGGAAAGTATGGTACCCGTTATGGTGCCAGT
TTGAGGAAGCAAATTAAGAAGATGGAGGTTAGTCAGCATAGCAAATATTT
CTGCGAATTTTGCGGGAAGTATGCGGTGAAGAGGAAAGCTGTTGGCATTT
GGGGCTGCAAGGACTGTGGGAAAGTCAAGGCAGGCGGTGCCTACACTTTG
AACACTGCTAGTGCTGTGACTGTGAGGAGCATAATCCGTAGGTTGAGGGA
GCAAACTGAAAGCTGAGCTTTGCCACCATTGGCTTCCTCCCGTGTCTTAG
GTGGTTTGATCTTTAGTTTCGGATACAACCTTAAATCATTTTTGATGTTG
CTTTATTTACCAATTTCATGTTTCTAGATGCAAAACAATTGGTTGTTGGA
ACATGAAACTTTTGGCTGTGTTTTGACTCTTGAGATGTTCATTCGCTATT
TTTCCTATGAAATTATGTTATCTAGTGGGTTGATGAAAAAAAAAAAAAAA
AAAAAAAAAAAAA
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