CK932836

Overview
NameCK932836
Unique NameCK932836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932836 vs. ExPASy Swiss-Prot
Match: RL37A_SCHMA (60S ribosomal protein L37a (Fragment) OS=Schistosoma mansoni PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.150e-30
Identity = 62/90 (68.89%), Postives = 72/90 (80.00%), Query Frame = 1
Query:   94 KRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSIIRRLREQTES 363
            KRTKK GIVGKYG RYGASLRK IKK+E+SQH+KY C FCGK ++KRKA GIW CK C KV AGGAY  +T +A T+R+ IRRLR+  ES
Sbjct:    2 KRTKKVGIVGKYGVRYGASLRKTIKKIEISQHAKYNCNFCGKDSLKRKAAGIWECKACKKVVAGGAYVCSTTAATTIRAAIRRLRDAHES 91          
BLAST of CK932836 vs. ExPASy Swiss-Prot
Match: RL37A_OSTOS (60S ribosomal protein L37a OS=Ostertagia ostertagi GN=rpl-37a PE=3 SV=3)

HSP 1 Score: 132.109 bits (331), Expect = 2.150e-30
Identity = 61/91 (67.03%), Postives = 70/91 (76.92%), Query Frame = 1
Query:   88 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSIIRRLREQTE 360
            M KRTKK GIVGKYGTRYGASLRK +KKME++QHS+Y C FCGK A++R AVGIW C  C K  AGGAY   T +A TVRS +RRLR+  E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKMVKKMEITQHSRYTCPFCGKDAMRRGAVGIWNCSKCKKTVAGGAYVYGTVAAATVRSTVRRLRDLKE 91          
BLAST of CK932836 vs. ExPASy Swiss-Prot
Match: RL43_YEAST (60S ribosomal protein L43 OS=Saccharomyces cerevisiae GN=RPL43A PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 3.667e-30
Identity = 60/92 (65.22%), Postives = 71/92 (77.17%), Query Frame = 1
Query:   88 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSIIRRLREQTES 363
            M KRTKK GI GKYG RYG+SLR+Q+KK+E+ QH++Y C FCGK  VKR A GIW C  C K  AGGAYT++TA+A TVRS IRRLRE  E+
Sbjct:    1 MAKRTKKVGITGKYGVRYGSSLRRQVKKLEIQQHARYDCSFCGKKTVKRGAAGIWTCSCCKKTVAGGAYTVSTAAAATVRSTIRRLREMVEA 92          
BLAST of CK932836 vs. ExPASy Swiss-Prot
Match: RL37A_DROME (60S ribosomal protein L37a OS=Drosophila melanogaster GN=RpL37A PE=1 SV=3)

HSP 1 Score: 131.339 bits (329), Expect = 3.667e-30
Identity = 60/91 (65.93%), Postives = 71/91 (78.02%), Query Frame = 1
Query:   88 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSIIRRLREQTE 360
            M KRTKK GIVGKYGTRYGASLRK +KKME++QHSKY C FCGK ++KR  VGIW CK C +  AGGA+  +T +A +VRS +RRLRE  E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKMVKKMEITQHSKYTCSFCGKDSMKRAVVGIWSCKRCKRTVAGGAWVYSTTAAASVRSAVRRLRETKE 91          
BLAST of CK932836 vs. ExPASy Swiss-Prot
Match: RL43_CANGA (60S ribosomal protein L43 OS=Candida glabrata GN=RPL43 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.789e-30
Identity = 59/92 (64.13%), Postives = 71/92 (77.17%), Query Frame = 1
Query:   88 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSIIRRLREQTES 363
            M KRTKK GI GKYG RYG+SLR+Q+KK+EV QH++Y C FCGK  V+R A GIW C  C K  AGGAYT++TA+A TVRS IRRLR+  E+
Sbjct:    1 MAKRTKKVGITGKYGVRYGSSLRRQVKKLEVQQHARYDCSFCGKKTVRRGAAGIWSCHSCKKTVAGGAYTVSTAAAATVRSTIRRLRDMVEA 92          
BLAST of CK932836 vs. ExPASy Swiss-Prot
Match: RL37A_MYXGL (60S ribosomal protein L37a (Fragment) OS=Myxine glutinosa GN=rpl37a PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.628e-28
Identity = 58/83 (69.88%), Postives = 68/83 (81.93%), Query Frame = 1
Query:  112 GIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSIIRRLREQTE 360
            GIVGKYGTRYGASLRK +KK+E++QHSKY C FCGK  +KR+AVGIW C  C K  AGGA+T NT+SAVTV+S IRRLRE  +
Sbjct:    2 GIVGKYGTRYGASLRKMVKKIEITQHSKYTCTFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTSSAVTVKSAIRRLREMKD 84          
BLAST of CK932836 vs. ExPASy Swiss-Prot
Match: RL43B_SCHPO (60S ribosomal protein L43-B OS=Schizosaccharomyces pombe GN=rpl43b PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.854e-28
Identity = 58/93 (62.37%), Postives = 69/93 (74.19%), Query Frame = 1
Query:   88 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGC--KDCGKVKAGGAYTLNTASAVTVRSIIRRLREQTE 360
            MTKRTKK G+ GKYG RYGASLR+ ++K+EV QHS+Y C FCG+  VKR A GIW C  K C K  AGGA+T+ TA+A + RS IRRLRE  E
Sbjct:    1 MTKRTKKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRLTVKRTAAGIWKCSGKGCSKTLAGGAWTVTTAAATSARSTIRRLREMVE 93          
BLAST of CK932836 vs. ExPASy Swiss-Prot
Match: RL43A_SCHPO (60S ribosomal protein L43-A OS=Schizosaccharomyces pombe GN=rpl43a PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.854e-28
Identity = 59/93 (63.44%), Postives = 70/93 (75.27%), Query Frame = 1
Query:   88 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGC--KDCGKVKAGGAYTLNTASAVTVRSIIRRLREQTE 360
            MTKRTKK G+ GKYG RYGASLR+ ++K+EV QHS+Y C FCG+  VKR A GIW C  K C KV AGGA+T+ TA+A + RS IRRLRE  E
Sbjct:    1 MTKRTKKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRNTVKRTAAGIWCCNGKGCKKVLAGGAWTVTTAAATSARSTIRRLREMVE 93          
BLAST of CK932836 vs. ExPASy Swiss-Prot
Match: RL37A_PLAF7 (60S ribosomal protein L37a OS=Plasmodium falciparum (isolate 3D7) GN=RPL37A PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.225e-27
Identity = 56/91 (61.54%), Postives = 69/91 (75.82%), Query Frame = 1
Query:   88 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSIIRRLREQTE 360
            M++RTKK G+ GKYGTRYG+SLRKQIKK+E+ QH+KY C FCGK A KR  VGIW CK C +   GGA++L T +AV  +S I RLR+Q E
Sbjct:    1 MSRRTKKVGLTGKYGTRYGSSLRKQIKKIELMQHAKYLCTFCGKTATKRTCVGIWKCKKCKRKVCGGAWSLTTPAAVAAKSTIIRLRKQKE 91          
BLAST of CK932836 vs. ExPASy Swiss-Prot
Match: RL37L_HUMAN (Putative 60S ribosomal protein L37a-like OS=Homo sapiens GN=RPL37L PE=5 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 4.064e-21
Identity = 52/89 (58.43%), Postives = 63/89 (70.79%), Query Frame = 1
Query:   88 MTKRTKKAG-IVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSIIRRLRE 351
            M K TKK G IV KY T +GASL K +K++E+SQH+KY C FCGK  +KR+AV I  C  C K  AG A+T NT SAV V+S IRRL+E
Sbjct:    1 MAKCTKKVGGIVSKYRTHHGASLWKMVKEIEISQHTKYTCSFCGKTKMKRRAVKIRHCNSCMKTVAGSAWTYNTTSAVMVKSAIRRLKE 89          
The following BLAST results are available for this feature:
BLAST of CK932836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
RL37A_SCHMA2.150e-3068.8960S ribosomal protein L37a (Fragment) OS=Schistoso... [more]
RL37A_OSTOS2.150e-3067.0360S ribosomal protein L37a OS=Ostertagia ostertagi... [more]
RL43_YEAST3.667e-3065.2260S ribosomal protein L43 OS=Saccharomyces cerevis... [more]
RL37A_DROME3.667e-3065.9360S ribosomal protein L37a OS=Drosophila melanogas... [more]
RL43_CANGA4.789e-3064.1360S ribosomal protein L43 OS=Candida glabrata GN=R... [more]
RL37A_MYXGL2.628e-2869.8860S ribosomal protein L37a (Fragment) OS=Myxine gl... [more]
RL43B_SCHPO5.854e-2862.3760S ribosomal protein L43-B OS=Schizosaccharomyces... [more]
RL43A_SCHPO5.854e-2863.4460S ribosomal protein L43-A OS=Schizosaccharomyces... [more]
RL37A_PLAF72.225e-2761.5460S ribosomal protein L37a OS=Plasmodium falciparu... [more]
RL37L_HUMAN4.064e-2158.43Putative 60S ribosomal protein L37a-like OS=Homo s... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004350_H04 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IVF_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932836 ID=CK932836; Name=CK932836; organism=Citrus sinensis; type=EST; length=613bp
GGGGGGGGTTAGGGTTTCTTTTGTCGCTCTACGTCTCAAACAGCCGCTGC
TTGTTGAAGAGCTACAGACCTTCGCTCCAACGCCACAATGACCAAACGTA
CGAAGAAGGCCGGAATCGTTGGAAAGTATGGTACCCGTTATGGTGCCAGT
TTGAGGAAGCAAATTAAGAAGATGGAGGTTAGTCAGCATAGCAAATATTT
CTGCGAATTTTGCGGGAAGTATGCGGTGAAGAGGAAAGCTGTTGGCATTT
GGGGCTGCAAGGACTGTGGGAAAGTCAAGGCAGGCGGTGCCTACACTTTG
AACACTGCTAGTGCTGTGACTGTGAGGAGCATAATCCGTAGGTTGAGGGA
GCAAACTGAAAGCTGAGCTTTGCCACCATTGGCTTCCTCCCGTGTCTTAG
GTGGTTTGATCTTTAGTTTCGGATACAACCTTAAATCATTTTTGATGTTG
CTTTATTTACCAATTTCATGTTTCTAGATGCAAAACAATTGGTTGTTGGA
ACATGAAACTTTTGGCTGTGTTTTGACTCTTGAGATGTTCATTCGCTATT
TTTCCTATGAAATTATGTTATCTAGTGGGTTGATGAAAAAAAAAAAAAAA
AAAAAAAAAAAAA
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