CK932836

Overview
NameCK932836
Unique NameCK932836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932836 vs. ExPASy Swiss-Prot
Match: RL37A_DESK1 (50S ribosomal protein L37Ae OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl37Ae PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.654e-14
Identity = 40/83 (48.19%), Postives = 52/83 (62.65%), Query Frame = 1
Query:   97 RTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCG-KYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSIIRR 342
            +TK  GI G+YGTRYG++LRK+I+ +   ++S + C FCG K  V R + G+W CK CG   AGGAY   T SA     II R
Sbjct:    3 KTKVVGIAGRYGTRYGSTLRKKIRDILEKRYSPHTCPFCGHKGKVYRLSTGVWACKKCGAKWAGGAYMPKTESAKLFSDIIIR 85          
BLAST of CK932836 vs. ExPASy Swiss-Prot
Match: RL37A_META3 (50S ribosomal protein L37Ae OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl37Ae PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.821e-14
Identity = 36/84 (42.86%), Postives = 48/84 (57.14%), Query Frame = 1
Query:  100 TKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSIIRRLRE 351
            TKK G  G++G RYG  +R +++ +E+ Q   Y C  CG   +KR +  IW CK CG   AGGAYT  T +   V   IRR+ E
Sbjct:    7 TKKIGSAGRFGARYGRKVRVRVRDVEIKQKKAYKCPVCGFMKLKRISTSIWECKKCGAKMAGGAYTPETGAGKVVAKAIRRVIE 90          
BLAST of CK932836 vs. ExPASy Swiss-Prot
Match: RL37A_METJA (50S ribosomal protein L37Ae OS=Methanocaldococcus jannaschii GN=rpl37ae PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.684e-14
Identity = 37/91 (40.66%), Postives = 50/91 (54.95%), Query Frame = 1
Query:   88 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSIIRRLREQTE 360
            M   TKK G  G++G RYG  +R +++ +E+    KY C  CG   +KR +  IW C  CG   AGGAYT  T +   V   IRR+ E+ E
Sbjct:    1 MFSHTKKVGPTGRFGPRYGLKIRVRVRDVEIKAKKKYKCPVCGFPKLKRASTSIWVCGKCGAKIAGGAYTPETGAGKAVMKAIRRIVERKE 91          
BLAST of CK932836 vs. ExPASy Swiss-Prot
Match: RL37A_PYRFU (50S ribosomal protein L37Ae OS=Pyrococcus furiosus GN=rpl37ae PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.072e-13
Identity = 34/78 (43.59%), Postives = 46/78 (58.97%), Query Frame = 1
Query:  100 TKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSI 333
            TKK G  G++G RYG  +R+++  +E     K+ C  CG+ AVKR + GIW C+ CG   AGGAY   T +   VR I
Sbjct:    4 TKKVGSAGRFGARYGLKIRRRVAAVEAKMRQKHTCPVCGRKAVKRISTGIWQCQKCGATFAGGAYLPVTPAGKAVRRI 81          
BLAST of CK932836 vs. ExPASy Swiss-Prot
Match: RL37A_METKA (50S ribosomal protein L37Ae OS=Methanopyrus kandleri GN=rpl37ae PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.072e-13
Identity = 37/86 (43.02%), Postives = 49/86 (56.98%), Query Frame = 1
Query:   97 RTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSIIRRLREQ 354
            RTKK G  G++G RYG  +R+++ ++E  Q  K+ C  C K AVKR   GIW C  CG    GGAY   T +   VR  IR+  E+
Sbjct:    3 RTKKVGPAGRFGPRYGMRIRRRVAEIESVQRQKHECPVCHKRAVKRVGTGIWRCTKCGAEFTGGAYYPETEAQRIVRRAIRKALEE 88          
BLAST of CK932836 vs. ExPASy Swiss-Prot
Match: RL37A_PYRHO (50S ribosomal protein L37Ae OS=Pyrococcus horikoshii GN=rpl37ae PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.400e-13
Identity = 33/79 (41.77%), Postives = 46/79 (58.23%), Query Frame = 1
Query:  100 TKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSII 336
            TKK G  G++G RYG  +R+++  +E     K+ C  CG+ AVKR + GIW C  CG + AGGAY   T +    R I+
Sbjct:    4 TKKVGSAGRFGARYGLKIRRRVAAVEAKMRQKHVCPVCGRRAVKRISTGIWQCTKCGAIFAGGAYLPVTPAGKVARRIM 82          
BLAST of CK932836 vs. ExPASy Swiss-Prot
Match: RL37A_PYRAB (50S ribosomal protein L37Ae OS=Pyrococcus abyssi GN=rpl37ae PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.400e-13
Identity = 31/79 (39.24%), Postives = 47/79 (59.49%), Query Frame = 1
Query:  100 TKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSII 336
            TKK G  G++G RYG  +R+++  +E     K+ C  CG+ AV+R + GIW CK CG + AGGAY   T +    + ++
Sbjct:    4 TKKVGSAGRFGPRYGLKIRRRVAAVEAKMRQKHVCPVCGRRAVRRISTGIWQCKKCGAIFAGGAYLPVTPAGKVAKRVV 82          
BLAST of CK932836 vs. ExPASy Swiss-Prot
Match: RL37A_METTH (50S ribosomal protein L37Ae OS=Methanobacterium thermoautotrophicum GN=rpl37ae PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.400e-13
Identity = 35/83 (42.17%), Postives = 48/83 (57.83%), Query Frame = 1
Query:   97 RTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSIIRRL 345
            RTKK GI G++G RYG   ++ +KK+E     K+ C  C +  VKR++ GIW C+ CG V  GGAY   T    T    I+R+
Sbjct:    3 RTKKVGITGRFGPRYGRKAKRAVKKIEEEMKRKHVCPSCDRPGVKRESRGIWKCRKCGAVFTGGAYLPVTPMGKTAARNIKRI 85          
BLAST of CK932836 vs. ExPASy Swiss-Prot
Match: RL37A_METS3 (50S ribosomal protein L37Ae OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl37Ae PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.119e-13
Identity = 34/83 (40.96%), Postives = 47/83 (56.63%), Query Frame = 1
Query:   97 RTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSIIRRL 345
            RTKK GI G++G RYG   ++ +K +E +    + C  C +  VKR+A GIW C+ CG V  GGAY   T  A +    IR +
Sbjct:    3 RTKKVGITGRFGARYGRKAKRSVKMIEENMKKNHVCPRCDRPYVKRQAAGIWKCRKCGAVFTGGAYVPETPMAKSAARNIRNV 85          
BLAST of CK932836 vs. ExPASy Swiss-Prot
Match: RL37A_METMP (50S ribosomal protein L37Ae OS=Methanococcus maripaludis GN=rpl37ae PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.320e-13
Identity = 34/84 (40.48%), Postives = 48/84 (57.14%), Query Frame = 1
Query:  100 TKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSIIRRLRE 351
            TKK G  G++G+RYG  +R +++ +E+ Q+  Y C  C    +KR    IW C+ CG   AGGAYT  T +   V   IRR+ E
Sbjct:    7 TKKIGSAGRFGSRYGRKIRVRLRDVEIKQNKDYKCPVCAFPKLKRAGTSIWVCEKCGAKIAGGAYTPETGAGKVVTKAIRRVIE 90          
The following BLAST results are available for this feature:
BLAST of CK932836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
RL37A_DESK11.654e-1448.1950S ribosomal protein L37Ae OS=Desulfurococcus kam... [more]
RL37A_META32.821e-1442.8650S ribosomal protein L37Ae OS=Methanococcus aeoli... [more]
RL37A_METJA3.684e-1440.6650S ribosomal protein L37Ae OS=Methanocaldococcus ... [more]
RL37A_PYRFU1.072e-1343.5950S ribosomal protein L37Ae OS=Pyrococcus furiosus... [more]
RL37A_METKA1.072e-1343.0250S ribosomal protein L37Ae OS=Methanopyrus kandle... [more]
RL37A_PYRHO1.400e-1341.7750S ribosomal protein L37Ae OS=Pyrococcus horikosh... [more]
RL37A_PYRAB1.400e-1339.2450S ribosomal protein L37Ae OS=Pyrococcus abyssi G... [more]
RL37A_METTH1.400e-1342.1750S ribosomal protein L37Ae OS=Methanobacterium th... [more]
RL37A_METS33.119e-1340.9650S ribosomal protein L37Ae OS=Methanobrevibacter ... [more]
RL37A_METMP5.320e-1340.4850S ribosomal protein L37Ae OS=Methanococcus marip... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004350_H04 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IVF_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932836 ID=CK932836; Name=CK932836; organism=Citrus sinensis; type=EST; length=613bp
GGGGGGGGTTAGGGTTTCTTTTGTCGCTCTACGTCTCAAACAGCCGCTGC
TTGTTGAAGAGCTACAGACCTTCGCTCCAACGCCACAATGACCAAACGTA
CGAAGAAGGCCGGAATCGTTGGAAAGTATGGTACCCGTTATGGTGCCAGT
TTGAGGAAGCAAATTAAGAAGATGGAGGTTAGTCAGCATAGCAAATATTT
CTGCGAATTTTGCGGGAAGTATGCGGTGAAGAGGAAAGCTGTTGGCATTT
GGGGCTGCAAGGACTGTGGGAAAGTCAAGGCAGGCGGTGCCTACACTTTG
AACACTGCTAGTGCTGTGACTGTGAGGAGCATAATCCGTAGGTTGAGGGA
GCAAACTGAAAGCTGAGCTTTGCCACCATTGGCTTCCTCCCGTGTCTTAG
GTGGTTTGATCTTTAGTTTCGGATACAACCTTAAATCATTTTTGATGTTG
CTTTATTTACCAATTTCATGTTTCTAGATGCAAAACAATTGGTTGTTGGA
ACATGAAACTTTTGGCTGTGTTTTGACTCTTGAGATGTTCATTCGCTATT
TTTCCTATGAAATTATGTTATCTAGTGGGTTGATGAAAAAAAAAAAAAAA
AAAAAAAAAAAAA
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