CK932923

Overview
NameCK932923
Unique NameCK932923
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig187 contig Csv1_Contig187:1..612. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL9_PONAB (60S ribosomal protein L9 OS=Pongo abelii GN=RPL9 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.351e-53
Identity = 104/183 (56.83%), Postives = 131/183 (71.58%), Query Frame = 1
Query:   88 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636
            MKTILS++T+DIP+ V + +  + + V+GPRG L RDF H+N++  L+  +   K++L++D W+G+RK  A +RT  SHV N+I GVT G+RYKMR VYAHFPIN  I  N   +EIRNFLGEK +R+  M  GV    S   KDEL+L GNDIELVS SAALI Q   VKNKDIRKFLDGIY
Sbjct:    1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRVDEWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILGGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 180          
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL9_DROME (60S ribosomal protein L9 OS=Drosophila melanogaster GN=RpL9 PE=1 SV=2)

HSP 1 Score: 204.527 bits (519), Expect = 3.705e-52
Identity = 101/183 (55.19%), Postives = 129/183 (70.49%), Query Frame = 1
Query:   88 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636
            M+TI S++ + IP  +K  + A+V+ + G RG L R FKHL LD ++       KR LK++ WFG++K  AA+RT  SH+ N+I GVT G++YKMR VYAHFPIN     NN  IEIRNFLGEK +R+ +M  GVTV+ S   KDEL+++GNDIE VS SAALI Q   VKNKDIRKFLDG+Y
Sbjct:    1 MRTINSNQCVKIPKDIKASVKARVVTITGTRGTLKRSFKHLALDMYM-----PDKRTLKVEKWFGTKKELAAVRTVCSHIENMIKGVTFGFQYKMRAVYAHFPINCVTSENNTVIEIRNFLGEKYIRRVEMAPGVTVVNSTAQKDELIVEGNDIESVSGSAALIQQSTTVKNKDIRKFLDGLY 178          
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL9_SPOFR (60S ribosomal protein L9 OS=Spodoptera frugiperda GN=RpL9 PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 4.838e-52
Identity = 100/183 (54.64%), Postives = 132/183 (72.13%), Query Frame = 1
Query:   88 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636
            MK I++++ + IP+G+ V + ++++ V+GPRG L R+FKHL +D  ++       R LK++ WFGS+K  AA+RT  SHV N+I GVTKG++YKMR VYAHFPIN      N  IEIRNFLGEK +R+  M  GVTV+ S K KDEL+++GN +E VS SAALI Q   VKNKDIRKFLDG+Y
Sbjct:    1 MKQIVANQKVKIPEGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RVLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRSVYAHFPINCVTTEGNSVIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLY 178          
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL9_DICDI (60S ribosomal protein L9 OS=Dictyostelium discoideum GN=rpl9 PE=1 SV=2)

HSP 1 Score: 199.904 bits (507), Expect = 9.125e-51
Identity = 95/183 (51.91%), Postives = 131/183 (71.58%), Query Frame = 1
Query:   88 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636
            MK I SS  + IP+ V V +  + ++V GPRG LS+ F H ++D +L+     GK++L +D WFG+RK  A I+T  S + N+ITGVTKGY YKMRFVYAHFPIN ++ +  + +EIRNF GEK VR+ ++LDG+T  R++K KDE+VL GN +EL+S+S A I  +  +K KD+RKFLDGIY
Sbjct:    1 MKVINSSRKVQIPENVTVDVKGRSVKVTGPRGTLSKSFDHASVDINLV-----GKKELTVDLWFGNRKQIACIKTITSIIENMITGVTKGYEYKMRFVYAHFPINVAVTDGGRVVEIRNFFGEKIVRRIELLDGITCYRNEKAKDEIVLTGNSLELLSQSCATIQLRSAIKYKDVRKFLDGIY 178          
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL9_CAEEL (60S ribosomal protein L9 OS=Caenorhabditis elegans GN=rpl-9 PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 5.536e-48
Identity = 93/183 (50.82%), Postives = 127/183 (69.40%), Query Frame = 1
Query:   88 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636
            MK I S++T+  P+GV   +  +++ V GPRG + +DF+HL+++      E  GK  L++  WFG RK  AAIRT  SH+ N+I GVT G+RYKMR VYAHFPIN ++ + N+ +EIRNFLGEK VR+  + +GV    S   KDE+V++GND++ VS++AA I Q   VK KDIRKFLDGIY
Sbjct:    1 MKLIESNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEM-----ERIGKSTLRVRKWFGVRKELAAIRTVCSHIKNMIKGVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIRNFLGEKIVRRVPLPEGVIATISTAQKDEIVVEGNDVQFVSQAAARIQQSTAVKEKDIRKFLDGIY 178          
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL9B_YEAST (60S ribosomal protein L9-B OS=Saccharomyces cerevisiae GN=RPL9B PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.967e-46
Identity = 94/185 (50.81%), Postives = 131/185 (70.81%), Query Frame = 1
Query:   88 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNN--KAIEIRNFLGEKKVRKADMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636
            MK I + + ++IP+GV V I +++++V GPRG L+++ KH+++ F      +   + +K+    G RK  AA+RT  S V N+ITGVTKGY+YKMR+VYAHFPIN +I   +  K IE+RNFLG+KK+R   + DGVT+  S  VKDE+VL GN +E VS++AA + Q C V+NKDIRKFLDGIY
Sbjct:    1 MKYIQTEQQIEIPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTF-----TKVNNQLIKVAVHNGDRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKDIRKFLDGIY 180          
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL9A_YEAST (60S ribosomal protein L9-A OS=Saccharomyces cerevisiae GN=RPL9A PE=1 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 5.181e-46
Identity = 93/185 (50.27%), Postives = 131/185 (70.81%), Query Frame = 1
Query:   88 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNN--KAIEIRNFLGEKKVRKADMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636
            MK I + + +++P+GV V I +++++V GPRG L+++ KH+++ F      +   + +K+    G RK  AA+RT  S V N+ITGVTKGY+YKMR+VYAHFPIN +I   +  K IE+RNFLG+KK+R   + DGVT+  S  VKDE+VL GN +E VS++AA + Q C V+NKDIRKFLDGIY
Sbjct:    1 MKYIQTEQQIEVPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTF-----TKVNNQLIKVAVHNGGRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKDIRKFLDGIY 180          
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL9B_SCHPO (60S ribosomal protein L9-B OS=Schizosaccharomyces pombe GN=rpl9b PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 5.729e-45
Identity = 91/182 (50.00%), Postives = 124/182 (68.13%), Query Frame = 1
Query:   91 KTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636
            + I   ET+ IP+GV V I A+++ V+GPRG L ++ + ++++     +       +K   W GSRK +A IRTA S + N+I GVT+G+RYKMR VYAHFPIN ++  N   +EIRNFLGE+  R    L GVTV  S  VKDE++++GN +E VS+SAA I Q C+V+NKDIRKFLDGIY
Sbjct:    3 RDIYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELKKQGNT------IKFIVWHGSRKHNACIRTAYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKDEIIIEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIY 178          
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL9A_SCHPO (60S ribosomal protein L9-A OS=Schizosaccharomyces pombe GN=rpl9a PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.713e-44
Identity = 91/182 (50.00%), Postives = 121/182 (66.48%), Query Frame = 1
Query:   91 KTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636
            + I   ET+ IP GV V I A+ + V GPRG L ++ +H++++     +       +K   W GSRK +A IR+  S + N+I GVT+G+RYKMR VYAHFPIN ++  N   +EIRNFLGE+  R    L GVTV  S  VKDE++L+GN +E VS+SAA I Q C+V+NKDIRKFLDGIY
Sbjct:    3 RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKKQGNT------IKFIVWHGSRKHNACIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKDEIILEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIY 178          
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_HYPBU (50S ribosomal protein L6P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.349e-36
Identity = 79/183 (43.17%), Postives = 122/183 (66.67%), Query Frame = 1
Query:   91 KTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKV-KDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636
            K +  +E + +P+GV+V I+   + V+GP+G+L+RDF H       + ++E GK K+ ++A+F +R+  A + T  +H+ N+ITGVTKG+RYK++ VY+HFP+   +  +   IE  NFLGEK  R A ++ GVTV    KV KD+++++G DIE V ++AA I Q   VK+KD R F+DGIY
Sbjct:    3 KAVYVAEEVRVPEGVEVSIDGLKVTVKGPKGELTRDFSHARNIVIRLDEDEEGK-KVVVEAYFANRRVKALVGTIAAHIENMITGVTKGFRYKLKIVYSHFPVTVKVQGDKVVIE--NFLGEKAPRIAKIMPGVTV----KVQKDDVIVEGIDIEAVGQTAANIEQATKVKDKDRRVFIDGIY 178          
The following BLAST results are available for this feature:
BLAST of CK932923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RL9_PONAB3.351e-5356.8360S ribosomal protein L9 OS=Pongo abelii GN=RPL9 P... [more]
RL9_DROME3.705e-5255.1960S ribosomal protein L9 OS=Drosophila melanogaste... [more]
RL9_SPOFR4.838e-5254.6460S ribosomal protein L9 OS=Spodoptera frugiperda ... [more]
RL9_DICDI9.125e-5151.9160S ribosomal protein L9 OS=Dictyostelium discoide... [more]
RL9_CAEEL5.536e-4850.8260S ribosomal protein L9 OS=Caenorhabditis elegans... [more]
RL9B_YEAST3.967e-4650.8160S ribosomal protein L9-B OS=Saccharomyces cerevi... [more]
RL9A_YEAST5.181e-4650.2760S ribosomal protein L9-A OS=Saccharomyces cerevi... [more]
RL9B_SCHPO5.729e-4550.0060S ribosomal protein L9-B OS=Schizosaccharomyces ... [more]
RL9A_SCHPO3.713e-4450.0060S ribosomal protein L9-A OS=Schizosaccharomyces ... [more]
RL6_HYPBU6.349e-3643.1750S ribosomal protein L6P OS=Hyperthermus butylicu... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004349_G10 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932923 ID=CK932923; Name=CK932923; organism=Citrus sinensis; type=EST; length=638bp
TACGGCCGGGGAGGGTTANNGNCTTTTGNNGGCTCTAGCTTAAGCGTAGG
AGGAGAAGAAGAAGGTAGATATTACAGAGAGAGGAAAATGAAGACAATTC
TCTCTTCAGAGACTATGGACATCCCAGATGGGGTGAAAGTCAAGATAAAT
GCAAAGGTTATTGAAGTAGAGGGACCGAGAGGTAAGCTCAGCCGCGACTT
CAAGCATTTGAACCTCGACTTCCATCTCATGACTGACGAGGAAACCGGTA
AGCGCAAGCTTAAGATCGATGCCTGGTTCGGCTCTCGCAAGACCAGCGCC
GCCATCAGAACTGCCCTCAGCCATGTCGGCAATCTCATCACTGGTGTTAC
CAAGGGCTATCGCTACAAGATGAGATTTGTGTACGCTCACTTTCCCATCA
ACGCCTCCATCGGTAACAATAACAAGGCCATTGAGATCCGTAACTTTCTT
GGAGAGAAAAAGGTTCGAAAAGCNGATATGCTTGATGGTGTTACCGTCAT
TAGGTCCGATAAGGTTAAGGATGAACTCGTTCTTGATGGAAATGACATTG
AACTCGTGTCTCGCTCTGCTGCTCTAATCAATCAGAAATGCCATGTGAAG
AACAAGGACATTAGGAAATTTCTTGATGGGATCTATGT
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