CK932923
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_IGNH4 (50S ribosomal protein L6P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl6p PE=3 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 1.197e-34 Identity = 74/183 (40.44%), Postives = 118/183 (64.48%), Query Frame = 1 Query: 91 KTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVKD-ELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636 K + +D+P+GV+V++ ++V GP+G+L RDF H + EE GK+++ ++ +F +RK A + T +H+ N+ITGVTKG+RYKM+ V++HFPI+ + + +EI NF+GEK R A +L GVTV KV+ +++++G DIE V+++AA I Q + D R F+DGIY Sbjct: 3 KAVWVHALVDVPEGVEVEVEGSKVKVRGPKGELERDFSHAK-GIRIRVVEEEGKKQVLVETFFANRKRKALVNTVAAHIKNMITGVTKGWRYKMKIVFSHFPISVKVVGDR--VEIHNFIGEKAPRVAKVLPGVTV----KVQGRDVIIEGTDIEKVAQTAANIEQATKITEFDRRVFMDGIY 178
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL9_HAECO (60S ribosomal protein L9 (Fragment) OS=Haemonchus contortus PE=2 SV=1) HSP 1 Score: 144.436 bits (363), Expect = 4.550e-34 Identity = 68/127 (53.54%), Postives = 90/127 (70.87%), Query Frame = 1 Query: 88 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVR 468 MK + S++T+D PDGV + +V+ V GPRG L RDF+HL+++ E GK +L++ WFG RK AAIRT SH+ N+I GVTKG+RYKMR VYAHFPIN ++ + + +EIRNFLGEK VR Sbjct: 1 MKLVESNDTVDFPDGVTFTVKNRVVHVTGPRGTLKRDFRHLHMEM-----ERVGKNQLRVRKWFGVRKEIAAIRTVCSHIQNMIKGVTKGFRYKMRSVYAHFPINVTLQDGGRTVEIRNFLGEKIVR 122
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_STAMF (50S ribosomal protein L6P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl6p PE=3 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 1.049e-30 Identity = 71/176 (40.34%), Postives = 111/176 (63.07%), Query Frame = 1 Query: 109 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636 E +DIP+ V V+IN ++V GP+G + RDF H+ +++ +E K + ++ +F R+ A + T SH+ N+I GV KGYRYK++ +Y+HFPI + + N+ + I+NFLGEK R A ++ G V + K +D ++++G DIE V ++AA I VK+KD R F DGIY Sbjct: 9 EEIDIPENVTVEINGLKVKVNGPKGSIERDFSHVR---NIILRKENSK--IIVETFFADRRKKALVGTIASHIENMIKGVLKGYRYKLKIIYSHFPITVEVDDRNRIVRIKNFLGEKSDRIAKII-GEDVKVTVKGED-IIVEGIDIEHVGQTAANIELATKVKDKDRRVFADGIY 177
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_DESK1 (50S ribosomal protein L6P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl6p PE=3 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.160e-29 Identity = 66/177 (37.29%), Postives = 108/177 (61.02%), Query Frame = 1 Query: 106 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636 +E ++IP+ V V+++ + V+GP+G ++RDF H F + D R + ++ + RK A + T +H+ N+ITGV +GYRYK++ +++HFPI S+ NK + IRNF+GEK R A + V V S ++++++G DIE V +AA I + V ++D R F+DGIY Sbjct: 8 AEKVEIPENVAVEVDGLRVTVKGPKGIITRDFSHARGVFIRLED-----RVVIVETFVADRKQKALVGTIAAHIRNMITGVVRGYRYKLKIIFSHFPITVSVDEKNKVVRIRNFMGEKSDRIAKIYGNVKVKVSG---EDIIIEGVDIEEVGLTAASIERATRVTDRDRRVFMDGIY 176
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_SULTO (50S ribosomal protein L6P OS=Sulfolobus tokodaii GN=rpl6p PE=3 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 1.675e-28 Identity = 63/184 (34.24%), Postives = 109/184 (59.24%), Query Frame = 1 Query: 88 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636 MK + E ++IP G+ V I I+V+GP+G++ +DF H++ + ++ K+ ++ F R+ A + ++H+ N+ TGVTKGYRY ++ +Y HFP+ + N ++I+N +GEK +R+A ++ GV V VK ++++++G DIE V ++AA I + D R F DGIY Sbjct: 1 MKAVHLYEEIEIPQGINVNIEGMKIKVKGPKGEIEKDFSHIS-GIEIRKEDN----KIVVETTFADRRKKAQFYSIIAHIENMFTGVTKGYRYYLKIIYTHFPVTVKVSGNE--VQIQNLIGEKNIRRAKIMTGVKV----NVKGEDIIVEGQDIEKVGQTAANIELASKITGYDRRVFADGIY 173
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_PYRKO (50S ribosomal protein L6P OS=Pyrococcus kodakaraensis GN=rpl6p PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 2.673e-26 Identity = 68/177 (38.42%), Postives = 105/177 (59.32%), Query Frame = 1 Query: 109 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636 E ++IP+GV+V + ++V+GP+G+L R+ K+ + T K+ I F +K A +RT +H+ N+I GVT+G++Y+++ VY+HFP+ + + IE NFLGEK R+A +L GVTV KVK E+ ++G D E V ++AA I Q + D R F DGIY Sbjct: 9 EEIEIPEGVEVTVEGNTVKVKGPKGELQRELKYPGVQIF------TEDGKVVIYKEFPRKKDVAIVRTFKAHINNMIKGVTEGFKYRLKVVYSHFPMTVKVQGDEVVIE--NFLGEKNPRRAKILPGVTV----KVKGSEIEVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIY 173
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_THEON (50S ribosomal protein L6P OS=Thermococcus onnurineus (strain NA1) GN=rpl6p PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 4.560e-26 Identity = 68/176 (38.64%), Postives = 102/176 (57.95%), Query Frame = 1 Query: 109 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636 E ++IP+GV+V I V++V GP+G+L R+ K+ + T K+ I F +K A RT +H+ N+I GVT+G+ YK++ VY+HFP+ + + IE NFLGEK R+A +L GVTV + E++++G D E V ++AA I Q + D R F DGIY Sbjct: 9 EEVEIPEGVEVTIERNVVKVRGPKGELERELKYPGVQIF------TEDGKVVIYKEFPRKKDIAIARTFKAHIANMIKGVTEGFTYKLKVVYSHFPMTVKVQGDEVVIE--NFLGEKNPRRAKILPGVTV---KVMGSEVIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIY 173
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_AERPE (50S ribosomal protein L6P OS=Aeropyrum pernix GN=rpl6p PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 4.560e-26 Identity = 66/177 (37.29%), Postives = 108/177 (61.02%), Query Frame = 1 Query: 109 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636 E +++P+GV V I+ ++V GP+G++ RDF H + D + ++++F + A + H+ N+I GV G+RYK++ +Y+HFPIN + +K I I NFLGEK +R A ++ GV V +VK +++++G D+E V+++AA I VK+KD RKF+DGIY Sbjct: 9 ERVEVPEGVTVSIDGMRVKVSGPKGEVERDFSHARGVLIRLEDNS-----VVVESFFAKARQRALVGAIAGHIRNMIKGVQGGFRYKLKIMYSHFPINVKV-EGDKFI-ISNFLGEKGLRIARIMPGVKV----QVKGSDVIVEGIDVEKVAQTAANIELATKVKDKDRRKFMDGIY 174
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_THEGJ (50S ribosomal protein L6P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl6p PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.016e-25 Identity = 68/177 (38.42%), Postives = 104/177 (58.76%), Query Frame = 1 Query: 109 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636 E ++IP+GV+V + V++V+GP+G+L R+ K+ + T K+ + F +K A RT +H+ N+I GVT+G+ YK++ VY+HFP+ + + IE NFLGEK R+A +L GVTV KV+ E+ ++G D E V ++AA I Q + D R F DGIY Sbjct: 9 EEVEIPEGVEVTVENNVVKVKGPKGELERELKYPGVKIF------TEDGKVVVYKEFPRKKDIAIARTFKAHINNMIKGVTEGFTYKLKVVYSHFPVTVKVQGDEVIIE--NFLGEKNPRRAKILPGVTV----KVRGQEITVEGIDKEKVGQTAANIEQATRITKWDRRVFQDGIY 173
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_PYRAB (50S ribosomal protein L6P OS=Pyrococcus abyssi GN=rpl6p PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.016e-25 Identity = 70/177 (39.55%), Postives = 105/177 (59.32%), Query Frame = 1 Query: 109 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636 E ++IP+GV+V + ++V+GP+G++ R+ + + E GK + D F RK A +RT +H+ N+I GVT+G+ YK++ VY+HFPI + + IE NFLGEK R+A +L GVTV KVK E++++G D E V ++AA I Q + D R F DGIY Sbjct: 9 EEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFV----EGGKVVIYKD--FPRRKDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIE--NFLGEKAPRRAKILPGVTV----KVKGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIY 173 The following BLAST results are available for this feature:
BLAST of CK932923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
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Sequences
The
following sequences are available for this feature:
EST sequence >CK932923 ID=CK932923; Name=CK932923; organism=Citrus sinensis; type=EST; length=638bpback to top |