CK932923

Overview
NameCK932923
Unique NameCK932923
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig187 contig Csv1_Contig187:1..612. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_IGNH4 (50S ribosomal protein L6P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.197e-34
Identity = 74/183 (40.44%), Postives = 118/183 (64.48%), Query Frame = 1
Query:   91 KTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVKD-ELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636
            K +     +D+P+GV+V++    ++V GP+G+L RDF H      +   EE GK+++ ++ +F +RK  A + T  +H+ N+ITGVTKG+RYKM+ V++HFPI+  +  +   +EI NF+GEK  R A +L GVTV    KV+  +++++G DIE V+++AA I Q   +   D R F+DGIY
Sbjct:    3 KAVWVHALVDVPEGVEVEVEGSKVKVRGPKGELERDFSHAK-GIRIRVVEEEGKKQVLVETFFANRKRKALVNTVAAHIKNMITGVTKGWRYKMKIVFSHFPISVKVVGDR--VEIHNFIGEKAPRVAKVLPGVTV----KVQGRDVIIEGTDIEKVAQTAANIEQATKITEFDRRVFMDGIY 178          
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL9_HAECO (60S ribosomal protein L9 (Fragment) OS=Haemonchus contortus PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.550e-34
Identity = 68/127 (53.54%), Postives = 90/127 (70.87%), Query Frame = 1
Query:   88 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVR 468
            MK + S++T+D PDGV   +  +V+ V GPRG L RDF+HL+++      E  GK +L++  WFG RK  AAIRT  SH+ N+I GVTKG+RYKMR VYAHFPIN ++ +  + +EIRNFLGEK VR
Sbjct:    1 MKLVESNDTVDFPDGVTFTVKNRVVHVTGPRGTLKRDFRHLHMEM-----ERVGKNQLRVRKWFGVRKEIAAIRTVCSHIQNMIKGVTKGFRYKMRSVYAHFPINVTLQDGGRTVEIRNFLGEKIVR 122          
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_STAMF (50S ribosomal protein L6P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.049e-30
Identity = 71/176 (40.34%), Postives = 111/176 (63.07%), Query Frame = 1
Query:  109 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636
            E +DIP+ V V+IN   ++V GP+G + RDF H+    +++  +E  K  + ++ +F  R+  A + T  SH+ N+I GV KGYRYK++ +Y+HFPI   + + N+ + I+NFLGEK  R A ++ G  V  + K +D ++++G DIE V ++AA I     VK+KD R F DGIY
Sbjct:    9 EEIDIPENVTVEINGLKVKVNGPKGSIERDFSHVR---NIILRKENSK--IIVETFFADRRKKALVGTIASHIENMIKGVLKGYRYKLKIIYSHFPITVEVDDRNRIVRIKNFLGEKSDRIAKII-GEDVKVTVKGED-IIVEGIDIEHVGQTAANIELATKVKDKDRRVFADGIY 177          
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_DESK1 (50S ribosomal protein L6P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.160e-29
Identity = 66/177 (37.29%), Postives = 108/177 (61.02%), Query Frame = 1
Query:  106 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636
            +E ++IP+ V V+++   + V+GP+G ++RDF H    F  + D     R + ++ +   RK  A + T  +H+ N+ITGV +GYRYK++ +++HFPI  S+   NK + IRNF+GEK  R A +   V V  S    ++++++G DIE V  +AA I +   V ++D R F+DGIY
Sbjct:    8 AEKVEIPENVAVEVDGLRVTVKGPKGIITRDFSHARGVFIRLED-----RVVIVETFVADRKQKALVGTIAAHIRNMITGVVRGYRYKLKIIFSHFPITVSVDEKNKVVRIRNFMGEKSDRIAKIYGNVKVKVSG---EDIIIEGVDIEEVGLTAASIERATRVTDRDRRVFMDGIY 176          
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_SULTO (50S ribosomal protein L6P OS=Sulfolobus tokodaii GN=rpl6p PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.675e-28
Identity = 63/184 (34.24%), Postives = 109/184 (59.24%), Query Frame = 1
Query:   88 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636
            MK +   E ++IP G+ V I    I+V+GP+G++ +DF H++    +  ++     K+ ++  F  R+  A   + ++H+ N+ TGVTKGYRY ++ +Y HFP+   +  N   ++I+N +GEK +R+A ++ GV V     VK ++++++G DIE V ++AA I     +   D R F DGIY
Sbjct:    1 MKAVHLYEEIEIPQGINVNIEGMKIKVKGPKGEIEKDFSHIS-GIEIRKEDN----KIVVETTFADRRKKAQFYSIIAHIENMFTGVTKGYRYYLKIIYTHFPVTVKVSGNE--VQIQNLIGEKNIRRAKIMTGVKV----NVKGEDIIVEGQDIEKVGQTAANIELASKITGYDRRVFADGIY 173          
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_PYRKO (50S ribosomal protein L6P OS=Pyrococcus kodakaraensis GN=rpl6p PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.673e-26
Identity = 68/177 (38.42%), Postives = 105/177 (59.32%), Query Frame = 1
Query:  109 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636
            E ++IP+GV+V +    ++V+GP+G+L R+ K+  +         T   K+ I   F  +K  A +RT  +H+ N+I GVT+G++Y+++ VY+HFP+   +  +   IE  NFLGEK  R+A +L GVTV    KVK  E+ ++G D E V ++AA I Q   +   D R F DGIY
Sbjct:    9 EEIEIPEGVEVTVEGNTVKVKGPKGELQRELKYPGVQIF------TEDGKVVIYKEFPRKKDVAIVRTFKAHINNMIKGVTEGFKYRLKVVYSHFPMTVKVQGDEVVIE--NFLGEKNPRRAKILPGVTV----KVKGSEIEVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIY 173          
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_THEON (50S ribosomal protein L6P OS=Thermococcus onnurineus (strain NA1) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.560e-26
Identity = 68/176 (38.64%), Postives = 102/176 (57.95%), Query Frame = 1
Query:  109 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636
            E ++IP+GV+V I   V++V GP+G+L R+ K+  +         T   K+ I   F  +K  A  RT  +H+ N+I GVT+G+ YK++ VY+HFP+   +  +   IE  NFLGEK  R+A +L GVTV     +  E++++G D E V ++AA I Q   +   D R F DGIY
Sbjct:    9 EEVEIPEGVEVTIERNVVKVRGPKGELERELKYPGVQIF------TEDGKVVIYKEFPRKKDIAIARTFKAHIANMIKGVTEGFTYKLKVVYSHFPMTVKVQGDEVVIE--NFLGEKNPRRAKILPGVTV---KVMGSEVIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIY 173          
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_AERPE (50S ribosomal protein L6P OS=Aeropyrum pernix GN=rpl6p PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.560e-26
Identity = 66/177 (37.29%), Postives = 108/177 (61.02%), Query Frame = 1
Query:  109 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636
            E +++P+GV V I+   ++V GP+G++ RDF H       + D       + ++++F   +  A +     H+ N+I GV  G+RYK++ +Y+HFPIN  +   +K I I NFLGEK +R A ++ GV V    +VK  +++++G D+E V+++AA I     VK+KD RKF+DGIY
Sbjct:    9 ERVEVPEGVTVSIDGMRVKVSGPKGEVERDFSHARGVLIRLEDNS-----VVVESFFAKARQRALVGAIAGHIRNMIKGVQGGFRYKLKIMYSHFPINVKV-EGDKFI-ISNFLGEKGLRIARIMPGVKV----QVKGSDVIVEGIDVEKVAQTAANIELATKVKDKDRRKFMDGIY 174          
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_THEGJ (50S ribosomal protein L6P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.016e-25
Identity = 68/177 (38.42%), Postives = 104/177 (58.76%), Query Frame = 1
Query:  109 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636
            E ++IP+GV+V +   V++V+GP+G+L R+ K+  +         T   K+ +   F  +K  A  RT  +H+ N+I GVT+G+ YK++ VY+HFP+   +  +   IE  NFLGEK  R+A +L GVTV    KV+  E+ ++G D E V ++AA I Q   +   D R F DGIY
Sbjct:    9 EEVEIPEGVEVTVENNVVKVKGPKGELERELKYPGVKIF------TEDGKVVVYKEFPRKKDIAIARTFKAHINNMIKGVTEGFTYKLKVVYSHFPVTVKVQGDEVIIE--NFLGEKNPRRAKILPGVTV----KVRGQEITVEGIDKEKVGQTAANIEQATRITKWDRRVFQDGIY 173          
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_PYRAB (50S ribosomal protein L6P OS=Pyrococcus abyssi GN=rpl6p PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.016e-25
Identity = 70/177 (39.55%), Postives = 105/177 (59.32%), Query Frame = 1
Query:  109 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636
            E ++IP+GV+V +    ++V+GP+G++ R+     +   +    E GK  +  D  F  RK  A +RT  +H+ N+I GVT+G+ YK++ VY+HFPI   +  +   IE  NFLGEK  R+A +L GVTV    KVK  E++++G D E V ++AA I Q   +   D R F DGIY
Sbjct:    9 EEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFV----EGGKVVIYKD--FPRRKDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIE--NFLGEKAPRRAKILPGVTV----KVKGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIY 173          
The following BLAST results are available for this feature:
BLAST of CK932923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RL6_IGNH41.197e-3440.4450S ribosomal protein L6P OS=Ignicoccus hospitalis... [more]
RL9_HAECO4.550e-3453.5460S ribosomal protein L9 (Fragment) OS=Haemonchus ... [more]
RL6_STAMF1.049e-3040.3450S ribosomal protein L6P OS=Staphylothermus marin... [more]
RL6_DESK11.160e-2937.2950S ribosomal protein L6P OS=Desulfurococcus kamch... [more]
RL6_SULTO1.675e-2834.2450S ribosomal protein L6P OS=Sulfolobus tokodaii G... [more]
RL6_PYRKO2.673e-2638.4250S ribosomal protein L6P OS=Pyrococcus kodakaraen... [more]
RL6_THEON4.560e-2638.6450S ribosomal protein L6P OS=Thermococcus onnurine... [more]
RL6_AERPE4.560e-2637.2950S ribosomal protein L6P OS=Aeropyrum pernix GN=r... [more]
RL6_THEGJ1.016e-2538.4250S ribosomal protein L6P OS=Thermococcus gammatol... [more]
RL6_PYRAB1.016e-2539.5550S ribosomal protein L6P OS=Pyrococcus abyssi GN=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004349_G10 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932923 ID=CK932923; Name=CK932923; organism=Citrus sinensis; type=EST; length=638bp
TACGGCCGGGGAGGGTTANNGNCTTTTGNNGGCTCTAGCTTAAGCGTAGG
AGGAGAAGAAGAAGGTAGATATTACAGAGAGAGGAAAATGAAGACAATTC
TCTCTTCAGAGACTATGGACATCCCAGATGGGGTGAAAGTCAAGATAAAT
GCAAAGGTTATTGAAGTAGAGGGACCGAGAGGTAAGCTCAGCCGCGACTT
CAAGCATTTGAACCTCGACTTCCATCTCATGACTGACGAGGAAACCGGTA
AGCGCAAGCTTAAGATCGATGCCTGGTTCGGCTCTCGCAAGACCAGCGCC
GCCATCAGAACTGCCCTCAGCCATGTCGGCAATCTCATCACTGGTGTTAC
CAAGGGCTATCGCTACAAGATGAGATTTGTGTACGCTCACTTTCCCATCA
ACGCCTCCATCGGTAACAATAACAAGGCCATTGAGATCCGTAACTTTCTT
GGAGAGAAAAAGGTTCGAAAAGCNGATATGCTTGATGGTGTTACCGTCAT
TAGGTCCGATAAGGTTAAGGATGAACTCGTTCTTGATGGAAATGACATTG
AACTCGTGTCTCGCTCTGCTGCTCTAATCAATCAGAAATGCCATGTGAAG
AACAAGGACATTAGGAAATTTCTTGATGGGATCTATGT
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