CK932923
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_SULSO (50S ribosomal protein L6P OS=Sulfolobus solfataricus GN=rpl6p PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 3.860e-25 Identity = 59/183 (32.24%), Postives = 105/183 (57.38%), Query Frame = 1 Query: 88 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636 M+ ++ E ++IP V V + +I+++GP+G++ +DF F K+ ++ F +R+ A + +SH+ N+ITGVTKGYRY ++ +Y HFP + + N ++I N +GEK R+A +L+GV V +++V++G ++E V+++AA I + D R F DGI+ Sbjct: 1 MQIVILREEIEIPKNVVVDLKGSIIKIKGPKGEVVKDFS-----FAKGIQISLDGNKIVLETTFANRRKKAVFYSIVSHIKNMITGVTKGYRYYLKIIYTHFPTSVKVVGNE--VQITNLIGEKNTRRAQILEGVKVTVKG---EDIVVEGPNLEAVAQTAANIESASKISGFDRRIFSDGIF 173
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_PYRFU (50S ribosomal protein L6P OS=Pyrococcus furiosus GN=rpl6p PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 3.860e-25 Identity = 71/177 (40.11%), Postives = 104/177 (58.76%), Query Frame = 1 Query: 109 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636 E ++IP+GV+V + ++V+GP+G+L R+F + E G + D F RK A RT +H+ N+I GVT+G+ YK++ VY+HFPI+ + + IE NFLGEK RKA +L GVTV KV+ E++++G D E V ++AA I Q + D R F DGIY Sbjct: 9 EEVEIPEGVEVTVEGYKVKVKGPKGELEREFFWPGIQIFT----EDGNVVIYKD--FPRRKDVAIARTFAAHIRNMIKGVTEGFTYKLKVVYSHFPISVKVQGDEVIIE--NFLGEKAPRKAKILPGVTV----KVRGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRIFQDGIY 173
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_METTP (50S ribosomal protein L6P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl6p PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 6.585e-25 Identity = 65/174 (37.36%), Postives = 103/174 (59.20%), Query Frame = 1 Query: 115 MDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636 +DIPDGV V+I+ + + V+GP+G+LSR+ + +++ + K+ I + ++ A + T +H+ N+I GVT G+ Y+MR VY+HFPI + + AI NFLGE+K R A ++ V V + KDE+++ G D E V ++ A I Q V+ D+R F DGIY Sbjct: 9 LDIPDGVDVQISGRSVRVKGPKGELSRELWYPDIEI------KREDSKILIRSVARKKQHLAMVGTIAAHIKNMIRGVTDGFEYRMRVVYSHFPIQVKVADGKVAIS--NFLGERKPRFATIVGDVNV---EVGKDEILIRGMDKEAVGQTMANIEQATRVRGFDVRIFQDGIY 171
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_METM7 (50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl6p PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 2.502e-24 Identity = 67/179 (37.43%), Postives = 99/179 (55.31%), Query Frame = 1 Query: 100 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636 L E ++IP+ V V++N + V+ +L RD + ++ T K+ I+ F + +A + T SH+ N+ITGVT G+ YK+ YAHFP+ S N + I NFLGEK R A ++DGVTV S +E+++ G + E V ++AA I Q VK +D R F DGIY Sbjct: 6 LIREEIEIPENVNVEVNGSTVAVKSGAKELKRDLLYPGIEI------STEDGKVVIECTFPRKAQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKGN--TVTIDNFLGEKYTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIY 173
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_METM5 (50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl6p PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 2.502e-24 Identity = 68/179 (37.99%), Postives = 99/179 (55.31%), Query Frame = 1 Query: 100 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636 L E ++IP+ V V+IN + V+ +L RD + ++ T K+ I+ F + +A + T SH+ N+ITGVT G+ YK+ YAHFP+ S N + I NFLGEK R A ++DGVTV S +E+++ G + E V ++AA I Q VK +D R F DGIY Sbjct: 6 LIREEIEIPENVNVEINGNTVAVKSGAKELRRDLMYPGIEI------STEDGKVVIECTFPRKVQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKGN--TVTIDNFLGEKYTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIY 173
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_METTH (50S ribosomal protein L6P OS=Methanobacterium thermoautotrophicum GN=rpl6p PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 3.268e-24 Identity = 70/180 (38.89%), Postives = 102/180 (56.67%), Query Frame = 1 Query: 100 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636 L E + IPDGV V I+ V V+GP+ +LSR F H + + D K+ ++ F +K A I T +H+ N+ITGVT+G+RY+M+ VYAHFP++ + + IE NFLGE+ R A + V +VK DE+ + G + E V ++ A I Q +K +D R F DGIY Sbjct: 6 LIREEIPIPDGVDVTIDGGVT-VKGPKWELSRKFNHSEISMAVEDD------KVVLEVKFPKKKDKAMIGTVRAHISNMITGVTEGFRYRMKIVYAHFPMSVKVAGDKVVIE--NFLGERHPRTARFVGDTKV----QVKGDEVEITGINKEHVGQTMANIEQATKIKGRDPRVFQDGIY 172
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_UNCMA (50S ribosomal protein L6P OS=Uncultured methanogenic archaeon RC-I GN=rpl6p PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 4.268e-24 Identity = 61/175 (34.86%), Postives = 102/175 (58.29%), Query Frame = 1 Query: 115 MDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTV-IRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636 +++P GV V ++ + +G +G++SR+F+ + T K+ ++ ++T A + T SH+ N++TGV++GY Y M+ VYAHFPI + +K + I NFLGE+K R A+++ V ++ DKV VL G + E + ++AA I Q C ++ +D R F DGIY Sbjct: 9 IEVPQGVTVTVSGATLTTKGQKGQISREFRFPGISVR------TDGGKVIVETGKDDKQTKATVGTYASHIKNMMTGVSEGYEYHMKIVYAHFPIQVKVEGKDK-VTIGNFLGERKARTANIVGETKVTVQGDKV----VLTGINKEDLGQTAANIEQACRIRKRDPRVFQDGIY 172
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_PYRHO (50S ribosomal protein L6P OS=Pyrococcus horikoshii GN=rpl6p PE=3 SV=2) HSP 1 Score: 110.538 bits (275), Expect = 7.281e-24 Identity = 68/177 (38.42%), Postives = 103/177 (58.19%), Query Frame = 1 Query: 109 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636 E ++IP+GV+V + ++V+GP+G++ + + + E GK + D F RK A +RT +H+ N+I GVT+G+ YK++ VY+HFPI + + IE NFLGEK R+A +L GVTV KVK E++++G D E ++AA I Q + D R F DGIY Sbjct: 9 EEIEIPEGVEVSVQDYNVKVKGPKGEVEKKLFWPGVKIFV----EDGKVVIYKD--FPRRKDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIE--NFLGEKAPRRAKILPGVTV----KVKGQEIIVEGIDKEATGQTAANIEQATRITKWDRRVFQDGIY 173
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_METHJ (50S ribosomal protein L6P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl6p PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 9.509e-24 Identity = 65/175 (37.14%), Postives = 97/175 (55.43%), Query Frame = 1 Query: 115 MDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKV-KDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636 + IP GV V ++ V+ V+GP+G L RD + ++ + G ++ + ++ + T SH N+ TGVTKGY Y M+ VY+HFPI + + +EI NFLGEK R A +L G TV KV DE+ + G D E+V +AA I + ++++D R F DGIY Sbjct: 7 VSIPSGVSVTMDGTVLHVKGPKGNLQRDMWYPGIEITI------GSEDVRFTTESQKKAVTSMVGTLASHCSNMCTGVTKGYLYSMKVVYSHFPIQIKV--VGETLEIVNFLGEKYPRSARILPGTTV----KVGSDEVTVTGIDKEVVGSTAANIERATRIRDRDPRVFQDGIY 169
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_METS3 (50S ribosomal protein L6P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl6p PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.242e-23 Identity = 64/176 (36.36%), Postives = 100/176 (56.82%), Query Frame = 1 Query: 109 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636 E ++IP+GV+V IN + V+GP G+ SR F + N+D +T+ E + ++ F +K A I T +H+ N+ITGVT G+ Y M+ V+AHFP+ + N + I NFLGE+ R A ++ V+ DE+ + G + E V ++ A + Q +K +D R F DGIY Sbjct: 9 EEIEIPEGVEVIINNNEVTVKGPNGEDSRKFTYPNVD---ITEVENN---VVLETSFPRKKDKAMIGTTKAHISNMITGVTDGFEYHMKIVFAHFPMTVKV--NKDVVVIDNFLGERHPRTAKVVGSAKVVVKG---DEVTITGINKEHVGQTMANLEQATKIKGRDPRVFQDGIY 173 The following BLAST results are available for this feature:
BLAST of CK932923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
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Sequences
The
following sequences are available for this feature:
EST sequence >CK932923 ID=CK932923; Name=CK932923; organism=Citrus sinensis; type=EST; length=638bpback to top |