CK932923

Overview
NameCK932923
Unique NameCK932923
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig187 contig Csv1_Contig187:1..612. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_SULSO (50S ribosomal protein L6P OS=Sulfolobus solfataricus GN=rpl6p PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.860e-25
Identity = 59/183 (32.24%), Postives = 105/183 (57.38%), Query Frame = 1
Query:   88 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636
            M+ ++  E ++IP  V V +   +I+++GP+G++ +DF      F           K+ ++  F +R+  A   + +SH+ N+ITGVTKGYRY ++ +Y HFP +  +  N   ++I N +GEK  R+A +L+GV V       +++V++G ++E V+++AA I     +   D R F DGI+
Sbjct:    1 MQIVILREEIEIPKNVVVDLKGSIIKIKGPKGEVVKDFS-----FAKGIQISLDGNKIVLETTFANRRKKAVFYSIVSHIKNMITGVTKGYRYYLKIIYTHFPTSVKVVGNE--VQITNLIGEKNTRRAQILEGVKVTVKG---EDIVVEGPNLEAVAQTAANIESASKISGFDRRIFSDGIF 173          
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_PYRFU (50S ribosomal protein L6P OS=Pyrococcus furiosus GN=rpl6p PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.860e-25
Identity = 71/177 (40.11%), Postives = 104/177 (58.76%), Query Frame = 1
Query:  109 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636
            E ++IP+GV+V +    ++V+GP+G+L R+F    +        E G   +  D  F  RK  A  RT  +H+ N+I GVT+G+ YK++ VY+HFPI+  +  +   IE  NFLGEK  RKA +L GVTV    KV+  E++++G D E V ++AA I Q   +   D R F DGIY
Sbjct:    9 EEVEIPEGVEVTVEGYKVKVKGPKGELEREFFWPGIQIFT----EDGNVVIYKD--FPRRKDVAIARTFAAHIRNMIKGVTEGFTYKLKVVYSHFPISVKVQGDEVIIE--NFLGEKAPRKAKILPGVTV----KVRGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRIFQDGIY 173          
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_METTP (50S ribosomal protein L6P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.585e-25
Identity = 65/174 (37.36%), Postives = 103/174 (59.20%), Query Frame = 1
Query:  115 MDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636
            +DIPDGV V+I+ + + V+GP+G+LSR+  + +++       +    K+ I +    ++  A + T  +H+ N+I GVT G+ Y+MR VY+HFPI   + +   AI   NFLGE+K R A ++  V V   +  KDE+++ G D E V ++ A I Q   V+  D+R F DGIY
Sbjct:    9 LDIPDGVDVQISGRSVRVKGPKGELSRELWYPDIEI------KREDSKILIRSVARKKQHLAMVGTIAAHIKNMIRGVTDGFEYRMRVVYSHFPIQVKVADGKVAIS--NFLGERKPRFATIVGDVNV---EVGKDEILIRGMDKEAVGQTMANIEQATRVRGFDVRIFQDGIY 171          
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_METM7 (50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.502e-24
Identity = 67/179 (37.43%), Postives = 99/179 (55.31%), Query Frame = 1
Query:  100 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636
            L  E ++IP+ V V++N   + V+    +L RD  +  ++        T   K+ I+  F  +  +A + T  SH+ N+ITGVT G+ YK+   YAHFP+  S   N   + I NFLGEK  R A ++DGVTV  S    +E+++ G + E V ++AA I Q   VK +D R F DGIY
Sbjct:    6 LIREEIEIPENVNVEVNGSTVAVKSGAKELKRDLLYPGIEI------STEDGKVVIECTFPRKAQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKGN--TVTIDNFLGEKYTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIY 173          
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_METM5 (50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.502e-24
Identity = 68/179 (37.99%), Postives = 99/179 (55.31%), Query Frame = 1
Query:  100 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636
            L  E ++IP+ V V+IN   + V+    +L RD  +  ++        T   K+ I+  F  +  +A + T  SH+ N+ITGVT G+ YK+   YAHFP+  S   N   + I NFLGEK  R A ++DGVTV  S    +E+++ G + E V ++AA I Q   VK +D R F DGIY
Sbjct:    6 LIREEIEIPENVNVEINGNTVAVKSGAKELRRDLMYPGIEI------STEDGKVVIECTFPRKVQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKGN--TVTIDNFLGEKYTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIY 173          
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_METTH (50S ribosomal protein L6P OS=Methanobacterium thermoautotrophicum GN=rpl6p PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.268e-24
Identity = 70/180 (38.89%), Postives = 102/180 (56.67%), Query Frame = 1
Query:  100 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636
            L  E + IPDGV V I+  V  V+GP+ +LSR F H  +   +  D      K+ ++  F  +K  A I T  +H+ N+ITGVT+G+RY+M+ VYAHFP++  +  +   IE  NFLGE+  R A  +    V    +VK DE+ + G + E V ++ A I Q   +K +D R F DGIY
Sbjct:    6 LIREEIPIPDGVDVTIDGGVT-VKGPKWELSRKFNHSEISMAVEDD------KVVLEVKFPKKKDKAMIGTVRAHISNMITGVTEGFRYRMKIVYAHFPMSVKVAGDKVVIE--NFLGERHPRTARFVGDTKV----QVKGDEVEITGINKEHVGQTMANIEQATKIKGRDPRVFQDGIY 172          
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_UNCMA (50S ribosomal protein L6P OS=Uncultured methanogenic archaeon RC-I GN=rpl6p PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.268e-24
Identity = 61/175 (34.86%), Postives = 102/175 (58.29%), Query Frame = 1
Query:  115 MDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTV-IRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636
            +++P GV V ++   +  +G +G++SR+F+   +         T   K+ ++     ++T A + T  SH+ N++TGV++GY Y M+ VYAHFPI   +   +K + I NFLGE+K R A+++    V ++ DKV    VL G + E + ++AA I Q C ++ +D R F DGIY
Sbjct:    9 IEVPQGVTVTVSGATLTTKGQKGQISREFRFPGISVR------TDGGKVIVETGKDDKQTKATVGTYASHIKNMMTGVSEGYEYHMKIVYAHFPIQVKVEGKDK-VTIGNFLGERKARTANIVGETKVTVQGDKV----VLTGINKEDLGQTAANIEQACRIRKRDPRVFQDGIY 172          
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_PYRHO (50S ribosomal protein L6P OS=Pyrococcus horikoshii GN=rpl6p PE=3 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 7.281e-24
Identity = 68/177 (38.42%), Postives = 103/177 (58.19%), Query Frame = 1
Query:  109 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636
            E ++IP+GV+V +    ++V+GP+G++ +      +   +    E GK  +  D  F  RK  A +RT  +H+ N+I GVT+G+ YK++ VY+HFPI   +  +   IE  NFLGEK  R+A +L GVTV    KVK  E++++G D E   ++AA I Q   +   D R F DGIY
Sbjct:    9 EEIEIPEGVEVSVQDYNVKVKGPKGEVEKKLFWPGVKIFV----EDGKVVIYKD--FPRRKDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIE--NFLGEKAPRRAKILPGVTV----KVKGQEIIVEGIDKEATGQTAANIEQATRITKWDRRVFQDGIY 173          
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_METHJ (50S ribosomal protein L6P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 9.509e-24
Identity = 65/175 (37.14%), Postives = 97/175 (55.43%), Query Frame = 1
Query:  115 MDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKV-KDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636
            + IP GV V ++  V+ V+GP+G L RD  +  ++  +      G   ++       +  ++ + T  SH  N+ TGVTKGY Y M+ VY+HFPI   +    + +EI NFLGEK  R A +L G TV    KV  DE+ + G D E+V  +AA I +   ++++D R F DGIY
Sbjct:    7 VSIPSGVSVTMDGTVLHVKGPKGNLQRDMWYPGIEITI------GSEDVRFTTESQKKAVTSMVGTLASHCSNMCTGVTKGYLYSMKVVYSHFPIQIKV--VGETLEIVNFLGEKYPRSARILPGTTV----KVGSDEVTVTGIDKEVVGSTAANIERATRIRDRDPRVFQDGIY 169          
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_METS3 (50S ribosomal protein L6P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.242e-23
Identity = 64/176 (36.36%), Postives = 100/176 (56.82%), Query Frame = 1
Query:  109 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636
            E ++IP+GV+V IN   + V+GP G+ SR F + N+D   +T+ E     + ++  F  +K  A I T  +H+ N+ITGVT G+ Y M+ V+AHFP+   +  N   + I NFLGE+  R A ++    V+      DE+ + G + E V ++ A + Q   +K +D R F DGIY
Sbjct:    9 EEIEIPEGVEVIINNNEVTVKGPNGEDSRKFTYPNVD---ITEVENN---VVLETSFPRKKDKAMIGTTKAHISNMITGVTDGFEYHMKIVFAHFPMTVKV--NKDVVVIDNFLGERHPRTAKVVGSAKVVVKG---DEVTITGINKEHVGQTMANLEQATKIKGRDPRVFQDGIY 173          
The following BLAST results are available for this feature:
BLAST of CK932923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RL6_SULSO3.860e-2532.2450S ribosomal protein L6P OS=Sulfolobus solfataric... [more]
RL6_PYRFU3.860e-2540.1150S ribosomal protein L6P OS=Pyrococcus furiosus G... [more]
RL6_METTP6.585e-2537.3650S ribosomal protein L6P OS=Methanosaeta thermoph... [more]
RL6_METM72.502e-2437.4350S ribosomal protein L6P OS=Methanococcus maripal... [more]
RL6_METM52.502e-2437.9950S ribosomal protein L6P OS=Methanococcus maripal... [more]
RL6_METTH3.268e-2438.8950S ribosomal protein L6P OS=Methanobacterium ther... [more]
RL6_UNCMA4.268e-2434.8650S ribosomal protein L6P OS=Uncultured methanogen... [more]
RL6_PYRHO7.281e-2438.4250S ribosomal protein L6P OS=Pyrococcus horikoshii... [more]
RL6_METHJ9.509e-2437.1450S ribosomal protein L6P OS=Methanospirillum hung... [more]
RL6_METS31.242e-2336.3650S ribosomal protein L6P OS=Methanobrevibacter sm... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004349_G10 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932923 ID=CK932923; Name=CK932923; organism=Citrus sinensis; type=EST; length=638bp
TACGGCCGGGGAGGGTTANNGNCTTTTGNNGGCTCTAGCTTAAGCGTAGG
AGGAGAAGAAGAAGGTAGATATTACAGAGAGAGGAAAATGAAGACAATTC
TCTCTTCAGAGACTATGGACATCCCAGATGGGGTGAAAGTCAAGATAAAT
GCAAAGGTTATTGAAGTAGAGGGACCGAGAGGTAAGCTCAGCCGCGACTT
CAAGCATTTGAACCTCGACTTCCATCTCATGACTGACGAGGAAACCGGTA
AGCGCAAGCTTAAGATCGATGCCTGGTTCGGCTCTCGCAAGACCAGCGCC
GCCATCAGAACTGCCCTCAGCCATGTCGGCAATCTCATCACTGGTGTTAC
CAAGGGCTATCGCTACAAGATGAGATTTGTGTACGCTCACTTTCCCATCA
ACGCCTCCATCGGTAACAATAACAAGGCCATTGAGATCCGTAACTTTCTT
GGAGAGAAAAAGGTTCGAAAAGCNGATATGCTTGATGGTGTTACCGTCAT
TAGGTCCGATAAGGTTAAGGATGAACTCGTTCTTGATGGAAATGACATTG
AACTCGTGTCTCGCTCTGCTGCTCTAATCAATCAGAAATGCCATGTGAAG
AACAAGGACATTAGGAAATTTCTTGATGGGATCTATGT
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