CK932923
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_METMP (50S ribosomal protein L6P OS=Methanococcus maripaludis GN=rpl6p PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.622e-23 Identity = 67/179 (37.43%), Postives = 99/179 (55.31%), Query Frame = 1 Query: 100 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636 L E ++IP+ V V+IN + V+ +L R+ + ++ T K+ I+ F + +A + T SH+ N+ITGVT G+ YK+ YAHFP+ S N + I NFLGEK R A ++DGVTV S +++V+ G + E V ++AA I Q VK +D R F DGIY Sbjct: 6 LIREEIEIPENVNVEINGSTVVVKSGAKELKRELMYPGIEI------STEDGKVVIECAFPRKAQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKGN--TVMIDNFLGEKYTRTAKIMDGVTVKVSG---EDVVVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIY 173
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_SULAC (50S ribosomal protein L6P OS=Sulfolobus acidocaldarius GN=rpl6p PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.118e-23 Identity = 58/183 (31.69%), Postives = 104/183 (56.83%), Query Frame = 1 Query: 88 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636 +K E + IPD VKV + V++V+GP+G++ +DF + + +E K+ ++ F R+ A + + ++H+ N+ITG GYRY ++ + HFPI+ + + +++ N +GEK +R+A +L GV V +++V++G+DI V+++AA I + D R F DGIY Sbjct: 4 LKAAYIREEIQIPDKVKVSLENNVLKVKGPKGEVIKDFSYAK-GIRIQLNEG----KIILETTFADRRKKALLYSIIAHIKNMITGTINGYRYYLKVISTHFPISVKVSGDE--VQVSNLIGEKNIRRAKILPGVKVTVKG---EDIVVEGSDIYNVAQTAANIESSTKIVGYDRRIFSDGIY 176
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_METJA (50S ribosomal protein L6P OS=Methanocaldococcus jannaschii GN=rpl6p PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.118e-23 Identity = 66/176 (37.50%), Postives = 100/176 (56.82%), Query Frame = 1 Query: 109 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636 E + IP+ V+V+IN + V+ +L R F+H + DE + I + RK A + T +H+ N+I GVT+G+ YK++ YAHFP+ S+ N IE NFLGEK R+A +++GVTV S +++++ G D E V ++AA I Q +K +D R F DGIY Sbjct: 9 ERVKIPENVQVEINNNEVVVKSGGKELRRRFEHPKIVIKKEGDE------IVIFCEYPRRKDKAMVGTIRAHINNMIKGVTEGFTYKLKIRYAHFPMKVSVKGNEVIIE--NFLGEKHPRRARIMEGVTVKISG---EDVIVTGIDKEKVGQTAANIEQATRIKGRDPRVFQDGIY 173
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_METM6 (50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl6p PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 3.613e-23 Identity = 67/179 (37.43%), Postives = 97/179 (54.19%), Query Frame = 1 Query: 100 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636 L E ++IP V V+IN + V+ +L RD + ++ T K+ I+ F + +A + T SH+ N+I GVT G+ YK+ YAHFP+ S N + I NFLGEK R A ++DGVTV S +E+++ G + E V ++AA I Q VK +D R F DGIY Sbjct: 6 LIREEIEIPANVNVEINGNTVAVKSGAKELKRDLLYPGIEI------STEDGKVVIECTFPRKAQTAIVGTYRSHIQNMIKGVTDGFEYKLVIRYAHFPMKVSAKGN--TVMIDNFLGEKYTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIY 173
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_METMA (50S ribosomal protein L6P OS=Methanosarcina mazei GN=rpl6p PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 5.218e-22 Identity = 65/177 (36.72%), Postives = 99/177 (55.93%), Query Frame = 1 Query: 106 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636 + T++IP+GV V ++ V +GP+G + R F + + + E + +DA ++ A + T SH+ NLI GV++G+ KM VYAHFP+ + K + I NFLGEKK R A +L G T ++ +E+V+ G + E V ++AA I QK +K D R F DGIY Sbjct: 6 ARTIEIPEGVSVSLSQDVFTAKGPKGTVERTFWYPGIKIEVREGE------VVVDAESSRKEQKAMVGTFASHLKNLIIGVSEGFECKMNIVYAHFPMQVKV--EGKTLVIGNFLGEKKPRIAKIL-GETKVKVS--GNEIVVSGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIY 171
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_METST (50S ribosomal protein L6P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl6p PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.518e-21 Identity = 65/179 (36.31%), Postives = 99/179 (55.31%), Query Frame = 1 Query: 106 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADML-DGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636 +E + IP+ V V IN + V+G G++ R+F H + + DEE + + F ++K A + T SH+ N+I GV G+ YKM+ VYAHFP+ + K + I NFLGE+ RKA ++ D V V VK +++ + G + E V ++ A I Q +K +D R F DGIY Sbjct: 8 TEIIPIPEDVTVTINGSEVTVKGNGGEIKRNFNHNKIT--ISNDEEN----VTVKVAFPNKKDKAMVGTIRSHISNMIYGVDHGFTYKMKIVYAHFPMTVKV--QGKIVTIDNFLGERSPRKAKIIGDDVKV----SVKGEDVTITGINKEHVGQTMANIEQATKIKGRDPRIFQDGIY 174
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_METVS (50S ribosomal protein L6P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl6p PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 4.417e-21 Identity = 61/180 (33.89%), Postives = 99/180 (55.00%), Query Frame = 1 Query: 100 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636 L E ++IP V V++N + V+ L R+ ++ + + K+ +++ F + +A + T SH+ N+I GV++G+ YK+ YAHFP+ + N I+ NFLGEK R A +++GVTV KV +E+++ G + E V ++AA I Q VK +D R F DGIY Sbjct: 6 LIREEIEIPGNVSVEVNGSEVVVKSGAKVLKRELAFPGIEIKMENE------KVVVESTFPKKNQTAMVGTYRSHIQNMIKGVSEGFEYKLVIRYAHFPMKVTFKGNTVIID--NFLGEKYPRTAKVMEGVTV----KVNGEEVIVSGTNKEFVGQTAANIEQATKVKGRDTRIFQDGIY 173
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_METVA (50S ribosomal protein L6P OS=Methanococcus vannielii GN=rpl6p PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 4.417e-21 Identity = 61/180 (33.89%), Postives = 99/180 (55.00%), Query Frame = 1 Query: 100 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636 L E ++IP V V++N + V+ L R+ ++ + + K+ +++ F + +A + T SH+ N+I GV++G+ YK+ YAHFP+ + N I+ NFLGEK R A +++GVTV KV +E+++ G + E V ++AA I Q VK +D R F DGIY Sbjct: 6 LIREEIEIPGNVSVEVNGSEVVVKSGAKVLKRELAFPGIEIKMENE------KVVVESTFPKKNQTAMVGTYRSHIQNMIKGVSEGFEYKLVIRYAHFPMKVTFKGNTVIID--NFLGEKYPRTAKVMEGVTV----KVNGEEVIVSGTNKEFVGQTAANIEQATKVKGRDTRIFQDGIY 173
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_METBU (50S ribosomal protein L6P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl6p PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.285e-20 Identity = 60/174 (34.48%), Postives = 93/174 (53.45%), Query Frame = 1 Query: 115 MDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636 + IP+GV V V+ GP+G +R + ++ E ++ +D+ +K A + T SH+ N++ GV G+ Y M+ VY+HFP+ + N K I NFLGEKK R +++L +V S DE+++ G + E V ++AA I QK +K D R F DGIY Sbjct: 9 ISIPEGVTVTFEKNVLSASGPKGTNTRFLWYPGVNI------EVNGSEIIVDSASSRKKQKAMVGTYTSHITNMMKGVVDGFEYHMKVVYSHFPMQIKV--NGKKFVINNFLGEKKPRVSNILGETSVKASG---DEVIVSGINKEDVGQTAANIEQKTKIKRFDPRVFQDGIY 171
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_META3 (50S ribosomal protein L6P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl6p PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.285e-20 Identity = 62/177 (35.03%), Postives = 105/177 (59.32%), Query Frame = 1 Query: 109 ETMDIPDGVKVK-INAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636 E ++IP+ V ++ IN + + V+ +L R + ++ ++ E+ K+ +++ + +K +A I T SH+ N+ITGV++G+ YKM+ YAHFP+ S+ N I+ NFLGEK RKA +++GV V S +++++ G D E ++AA I Q V+ +D R F DGIY Sbjct: 9 EEIEIPESVTIEVINNEEVVVKAGGKELRRILSYPDV---VIKKEDN---KVVVESLYPRKKQAAIIGTFASHIKNIITGVSEGFEYKMKIRYAHFPMKISVKGNEVIID--NFLGEKHPRKATIMEGVKVKVSG---EDVIVTGIDKEKTGQTAANIEQATRVRGRDTRVFQDGIY 174 The following BLAST results are available for this feature:
BLAST of CK932923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
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Sequences
The
following sequences are available for this feature:
EST sequence >CK932923 ID=CK932923; Name=CK932923; organism=Citrus sinensis; type=EST; length=638bpback to top |