CK932923

Overview
NameCK932923
Unique NameCK932923
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig187 contig Csv1_Contig187:1..612. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_METMP (50S ribosomal protein L6P OS=Methanococcus maripaludis GN=rpl6p PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.622e-23
Identity = 67/179 (37.43%), Postives = 99/179 (55.31%), Query Frame = 1
Query:  100 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636
            L  E ++IP+ V V+IN   + V+    +L R+  +  ++        T   K+ I+  F  +  +A + T  SH+ N+ITGVT G+ YK+   YAHFP+  S   N   + I NFLGEK  R A ++DGVTV  S    +++V+ G + E V ++AA I Q   VK +D R F DGIY
Sbjct:    6 LIREEIEIPENVNVEINGSTVVVKSGAKELKRELMYPGIEI------STEDGKVVIECAFPRKAQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKGN--TVMIDNFLGEKYTRTAKIMDGVTVKVSG---EDVVVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIY 173          
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_SULAC (50S ribosomal protein L6P OS=Sulfolobus acidocaldarius GN=rpl6p PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.118e-23
Identity = 58/183 (31.69%), Postives = 104/183 (56.83%), Query Frame = 1
Query:   88 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636
            +K     E + IPD VKV +   V++V+GP+G++ +DF +      +  +E     K+ ++  F  R+  A + + ++H+ N+ITG   GYRY ++ +  HFPI+  +  +   +++ N +GEK +R+A +L GV V       +++V++G+DI  V+++AA I     +   D R F DGIY
Sbjct:    4 LKAAYIREEIQIPDKVKVSLENNVLKVKGPKGEVIKDFSYAK-GIRIQLNEG----KIILETTFADRRKKALLYSIIAHIKNMITGTINGYRYYLKVISTHFPISVKVSGDE--VQVSNLIGEKNIRRAKILPGVKVTVKG---EDIVVEGSDIYNVAQTAANIESSTKIVGYDRRIFSDGIY 176          
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_METJA (50S ribosomal protein L6P OS=Methanocaldococcus jannaschii GN=rpl6p PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.118e-23
Identity = 66/176 (37.50%), Postives = 100/176 (56.82%), Query Frame = 1
Query:  109 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636
            E + IP+ V+V+IN   + V+    +L R F+H  +      DE      + I   +  RK  A + T  +H+ N+I GVT+G+ YK++  YAHFP+  S+  N   IE  NFLGEK  R+A +++GVTV  S    +++++ G D E V ++AA I Q   +K +D R F DGIY
Sbjct:    9 ERVKIPENVQVEINNNEVVVKSGGKELRRRFEHPKIVIKKEGDE------IVIFCEYPRRKDKAMVGTIRAHINNMIKGVTEGFTYKLKIRYAHFPMKVSVKGNEVIIE--NFLGEKHPRRARIMEGVTVKISG---EDVIVTGIDKEKVGQTAANIEQATRIKGRDPRVFQDGIY 173          
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_METM6 (50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.613e-23
Identity = 67/179 (37.43%), Postives = 97/179 (54.19%), Query Frame = 1
Query:  100 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636
            L  E ++IP  V V+IN   + V+    +L RD  +  ++        T   K+ I+  F  +  +A + T  SH+ N+I GVT G+ YK+   YAHFP+  S   N   + I NFLGEK  R A ++DGVTV  S    +E+++ G + E V ++AA I Q   VK +D R F DGIY
Sbjct:    6 LIREEIEIPANVNVEINGNTVAVKSGAKELKRDLLYPGIEI------STEDGKVVIECTFPRKAQTAIVGTYRSHIQNMIKGVTDGFEYKLVIRYAHFPMKVSAKGN--TVMIDNFLGEKYTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIY 173          
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_METMA (50S ribosomal protein L6P OS=Methanosarcina mazei GN=rpl6p PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.218e-22
Identity = 65/177 (36.72%), Postives = 99/177 (55.93%), Query Frame = 1
Query:  106 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636
            + T++IP+GV V ++  V   +GP+G + R F +  +   +   E      + +DA    ++  A + T  SH+ NLI GV++G+  KM  VYAHFP+   +    K + I NFLGEKK R A +L G T ++     +E+V+ G + E V ++AA I QK  +K  D R F DGIY
Sbjct:    6 ARTIEIPEGVSVSLSQDVFTAKGPKGTVERTFWYPGIKIEVREGE------VVVDAESSRKEQKAMVGTFASHLKNLIIGVSEGFECKMNIVYAHFPMQVKV--EGKTLVIGNFLGEKKPRIAKIL-GETKVKVS--GNEIVVSGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIY 171          
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_METST (50S ribosomal protein L6P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.518e-21
Identity = 65/179 (36.31%), Postives = 99/179 (55.31%), Query Frame = 1
Query:  106 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADML-DGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636
            +E + IP+ V V IN   + V+G  G++ R+F H  +   +  DEE     + +   F ++K  A + T  SH+ N+I GV  G+ YKM+ VYAHFP+   +    K + I NFLGE+  RKA ++ D V V     VK +++ + G + E V ++ A I Q   +K +D R F DGIY
Sbjct:    8 TEIIPIPEDVTVTINGSEVTVKGNGGEIKRNFNHNKIT--ISNDEEN----VTVKVAFPNKKDKAMVGTIRSHISNMIYGVDHGFTYKMKIVYAHFPMTVKV--QGKIVTIDNFLGERSPRKAKIIGDDVKV----SVKGEDVTITGINKEHVGQTMANIEQATKIKGRDPRIFQDGIY 174          
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_METVS (50S ribosomal protein L6P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.417e-21
Identity = 61/180 (33.89%), Postives = 99/180 (55.00%), Query Frame = 1
Query:  100 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636
            L  E ++IP  V V++N   + V+     L R+     ++  +  +      K+ +++ F  +  +A + T  SH+ N+I GV++G+ YK+   YAHFP+  +   N   I+  NFLGEK  R A +++GVTV    KV  +E+++ G + E V ++AA I Q   VK +D R F DGIY
Sbjct:    6 LIREEIEIPGNVSVEVNGSEVVVKSGAKVLKRELAFPGIEIKMENE------KVVVESTFPKKNQTAMVGTYRSHIQNMIKGVSEGFEYKLVIRYAHFPMKVTFKGNTVIID--NFLGEKYPRTAKVMEGVTV----KVNGEEVIVSGTNKEFVGQTAANIEQATKVKGRDTRIFQDGIY 173          
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_METVA (50S ribosomal protein L6P OS=Methanococcus vannielii GN=rpl6p PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.417e-21
Identity = 61/180 (33.89%), Postives = 99/180 (55.00%), Query Frame = 1
Query:  100 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636
            L  E ++IP  V V++N   + V+     L R+     ++  +  +      K+ +++ F  +  +A + T  SH+ N+I GV++G+ YK+   YAHFP+  +   N   I+  NFLGEK  R A +++GVTV    KV  +E+++ G + E V ++AA I Q   VK +D R F DGIY
Sbjct:    6 LIREEIEIPGNVSVEVNGSEVVVKSGAKVLKRELAFPGIEIKMENE------KVVVESTFPKKNQTAMVGTYRSHIQNMIKGVSEGFEYKLVIRYAHFPMKVTFKGNTVIID--NFLGEKYPRTAKVMEGVTV----KVNGEEVIVSGTNKEFVGQTAANIEQATKVKGRDTRIFQDGIY 173          
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_METBU (50S ribosomal protein L6P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.285e-20
Identity = 60/174 (34.48%), Postives = 93/174 (53.45%), Query Frame = 1
Query:  115 MDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636
            + IP+GV V     V+   GP+G  +R   +  ++       E    ++ +D+    +K  A + T  SH+ N++ GV  G+ Y M+ VY+HFP+   +  N K   I NFLGEKK R +++L   +V  S    DE+++ G + E V ++AA I QK  +K  D R F DGIY
Sbjct:    9 ISIPEGVTVTFEKNVLSASGPKGTNTRFLWYPGVNI------EVNGSEIIVDSASSRKKQKAMVGTYTSHITNMMKGVVDGFEYHMKVVYSHFPMQIKV--NGKKFVINNFLGEKKPRVSNILGETSVKASG---DEVIVSGINKEDVGQTAANIEQKTKIKRFDPRVFQDGIY 171          
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_META3 (50S ribosomal protein L6P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.285e-20
Identity = 62/177 (35.03%), Postives = 105/177 (59.32%), Query Frame = 1
Query:  109 ETMDIPDGVKVK-INAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636
            E ++IP+ V ++ IN + + V+    +L R   + ++   ++  E+    K+ +++ +  +K +A I T  SH+ N+ITGV++G+ YKM+  YAHFP+  S+  N   I+  NFLGEK  RKA +++GV V  S    +++++ G D E   ++AA I Q   V+ +D R F DGIY
Sbjct:    9 EEIEIPESVTIEVINNEEVVVKAGGKELRRILSYPDV---VIKKEDN---KVVVESLYPRKKQAAIIGTFASHIKNIITGVSEGFEYKMKIRYAHFPMKISVKGNEVIID--NFLGEKHPRKATIMEGVKVKVSG---EDVIVTGIDKEKTGQTAANIEQATRVRGRDTRVFQDGIY 174          
The following BLAST results are available for this feature:
BLAST of CK932923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RL6_METMP1.622e-2337.4350S ribosomal protein L6P OS=Methanococcus maripal... [more]
RL6_SULAC2.118e-2331.6950S ribosomal protein L6P OS=Sulfolobus acidocalda... [more]
RL6_METJA2.118e-2337.5050S ribosomal protein L6P OS=Methanocaldococcus ja... [more]
RL6_METM63.613e-2337.4350S ribosomal protein L6P OS=Methanococcus maripal... [more]
RL6_METMA5.218e-2236.7250S ribosomal protein L6P OS=Methanosarcina mazei ... [more]
RL6_METST1.518e-2136.3150S ribosomal protein L6P OS=Methanosphaera stadtm... [more]
RL6_METVS4.417e-2133.8950S ribosomal protein L6P OS=Methanococcus vanniel... [more]
RL6_METVA4.417e-2133.8950S ribosomal protein L6P OS=Methanococcus vanniel... [more]
RL6_METBU1.285e-2034.4850S ribosomal protein L6P OS=Methanococcoides burt... [more]
RL6_META31.285e-2035.0350S ribosomal protein L6P OS=Methanococcus aeolicu... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004349_G10 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932923 ID=CK932923; Name=CK932923; organism=Citrus sinensis; type=EST; length=638bp
TACGGCCGGGGAGGGTTANNGNCTTTTGNNGGCTCTAGCTTAAGCGTAGG
AGGAGAAGAAGAAGGTAGATATTACAGAGAGAGGAAAATGAAGACAATTC
TCTCTTCAGAGACTATGGACATCCCAGATGGGGTGAAAGTCAAGATAAAT
GCAAAGGTTATTGAAGTAGAGGGACCGAGAGGTAAGCTCAGCCGCGACTT
CAAGCATTTGAACCTCGACTTCCATCTCATGACTGACGAGGAAACCGGTA
AGCGCAAGCTTAAGATCGATGCCTGGTTCGGCTCTCGCAAGACCAGCGCC
GCCATCAGAACTGCCCTCAGCCATGTCGGCAATCTCATCACTGGTGTTAC
CAAGGGCTATCGCTACAAGATGAGATTTGTGTACGCTCACTTTCCCATCA
ACGCCTCCATCGGTAACAATAACAAGGCCATTGAGATCCGTAACTTTCTT
GGAGAGAAAAAGGTTCGAAAAGCNGATATGCTTGATGGTGTTACCGTCAT
TAGGTCCGATAAGGTTAAGGATGAACTCGTTCTTGATGGAAATGACATTG
AACTCGTGTCTCGCTCTGCTGCTCTAATCAATCAGAAATGCCATGTGAAG
AACAAGGACATTAGGAAATTTCTTGATGGGATCTATGT
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