CK932923

Overview
NameCK932923
Unique NameCK932923
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig187 contig Csv1_Contig187:1..612. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_METAC (50S ribosomal protein L6P OS=Methanosarcina acetivorans GN=rpl6p PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.192e-20
Identity = 64/180 (35.56%), Postives = 98/180 (54.44%), Query Frame = 1
Query:  106 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVK---DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636
            + T++IP+GV V +   V    GP+G + R   +  +    M D + G+  + +DA +  ++  A + T  SH+ NL+ GV +G+  KM  VYAHFP+   +  + K + I NFLGEKK R A       +I   KVK   +++ + G + E V ++AA I QK  +K  D R F DGIY
Sbjct:    6 ARTIEIPEGVSVSLAQDVFTATGPKGTVERKLWYPGI----MIDVKDGE--VVVDAEYARKEQKAMVGTFASHIRNLVKGVNEGFECKMSIVYAHFPMQVKV--DGKTLIIGNFLGEKKPRFA------KIIGETKVKVSGNDVTITGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIY 171          
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_HALWD (50S ribosomal protein L6P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.088e-19
Identity = 65/183 (35.52%), Postives = 98/183 (53.55%), Query Frame = 1
Query:  100 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSD---KVKDELV-LDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636
            ++   ++IP+ V  +++   + VEGP G ++R   + ++   +  DE+     + I+      KTSA + T  SHV N+I GVT G+ Y+M   YAHFP+  S+  +   IE  NFLGEK  R+       T IR D   ++  E+V L G   E V ++AA I Q   V +KD R F DG+Y
Sbjct:    1 MTRTAIEIPENVSAEVSNLALTVEGPNGSVTRTLWYPSVT--VSVDEDADADAVVIETDETDAKTSATVGTFESHVSNMIHGVTDGWSYEMEVYYAHFPMQVSVEGDEVIIE--NFLGEKASRR-------TPIRGDTNVQIDGEMVTLTGPSKEDVGQTAADIEQLTRVTDKDTRIFQDGVY 172          
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_HALSA (50S ribosomal protein L6P OS=Halobacterium salinarium GN=rpl6p PE=1 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 1.856e-19
Identity = 56/174 (32.18%), Postives = 93/174 (53.45%), Query Frame = 1
Query:  115 MDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636
            ++IPD V  +++   + VEGP G ++R   + ++D  +  D       + + +     KT + + T  SHV N+  GV++G+ YK+   Y+HFP+   +    + + I+NFLGEK  R+  +     V+  D   +E+ L G  IE V ++AA I Q   V +KD R F DG+Y
Sbjct:    6 IEIPDDVTAEVDHLDLTVEGPEGSVTRRLWYPDVDVSVEDDA------VVVASEVDDAKTDSTVGTFESHVANMFHGVSEGWEYKLEVHYSHFPMQVDV--EGEEVVIQNFLGEKAARRTQIRGDTDVVVDD---EEVTLSGPSIEDVGQTAADIEQLTRVTDKDTRVFQDGVY 168          
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_NANEQ (50S ribosomal protein L6P OS=Nanoarchaeum equitans GN=rpl6p PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.399e-19
Identity = 56/177 (31.64%), Postives = 93/177 (52.54%), Query Frame = 1
Query:  121 IPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKK--VRKADMLDGVTV-IRSDKVKDELVLDGNDIELVSRSAALINQKCHV--KNKDIRKFLDGIY 636
            IP+ VKV     +++V GP+G++ R F      +H +        K+ ++ +F +R+    I T  SH+ N++ GV   + Y+++  Y HFP+   +  N   +E  NFLGEK   +++   LD V V I  +K + E+V++  D E     A++I Q      K KD R+F DGI+
Sbjct:   12 IPENVKVSYENNILKVSGPKGEVERKF------YHPLIKLSVNDNKIILETYFATRREKRLINTWRSHIKNMLEGVQNPFVYRLKVCYTHFPMRVKLEGNKLIVE--NFLGEKAPIIKELPYLDKVKVKIEQNKDETEIVVESPDKEKAGIVASMIEQSTRFLHKRKDRRRFTDGIW 180          
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_NATPD (50S ribosomal protein L6P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.052e-19
Identity = 63/174 (36.21%), Postives = 93/174 (53.45%), Query Frame = 1
Query:  115 MDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636
            ++IPD V   ++   + VEGP G ++R   + ++      D E G   ++ D    + KT + + T  SHV N+  GVT+G+ Y M   Y+HFP+  S+   +  I I NFLGEK  RK   + G T +  D   +EL + G  IE V ++AA I Q   V +KD R F DG+Y
Sbjct:    5 IEIPDEVTATMDHLEVTVEGPNGSVTRRLWYPDIT----VDVEDGAVVIETDD--DNAKTRSTVGTFESHVTNMFHGVTEGWEYSMEVFYSHFPMQVSVEGGD--IVIENFLGEKAPRKTP-VRGDTSVEVD--GEELTVSGPSIEDVGQTAADIEQLTRVSDKDTRVFQDGVY 167          
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_HALMA (50S ribosomal protein L6P OS=Haloarcula marismortui GN=rpl6p PE=1 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 1.203e-18
Identity = 60/174 (34.48%), Postives = 97/174 (55.75%), Query Frame = 1
Query:  115 MDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636
            ++IP+ V  + +   I VEG  G ++R   + ++D  +  D +T    + I++   + KT + I T  SH+ N+  GVT+G+ Y M   Y+HFP+  ++  +   IE  NFLGEK  R+   + G T +  D   +EL + G DIE V ++AA I Q   + +KD+R F DG+Y
Sbjct:    6 LEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDID--VSVDGDT----VVIESDEDNAKTMSTIGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNVEGDEVVIE--NFLGEKAPRRT-TIHGDTDVEID--GEELTVSGPDIEAVGQTAADIEQLTRINDKDVRVFQDGVY 168          
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_ARCFU (50S ribosomal protein L6P OS=Archaeoglobus fulgidus GN=rpl6p PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.571e-18
Identity = 58/185 (31.35%), Postives = 95/185 (51.35%), Query Frame = 1
Query:   97 ILSSETMDIPDGVKVKINAK-----VIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636
            +     +++P+ V++ I         ++  GP+G+ +R  K+  +        E G  K+++      +K  A + T   H+ NLITGV +G+ Y ++ VYAHFPI   +  N   IE  NF+GEK  R+A ++    V  S +   ++ + G DIE   ++AA + Q   +K KD R F DGIY
Sbjct:   18 VYEERVVEVPEDVQLTIEGDSFRGYTLKAVGPKGENTRYLKYRGVFI------EVGDGKVRVYTTSPKKKHKAMVGTFAGHIENLITGVKEGFEYHLKVVYAHFPIKVRVEGNEVIIE--NFIGEKHPRRAKIVGRAQVEISGQ---DIYVRGIDIEECGQTAANLEQATKIKRKDPRVFQDGIY 191          
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_METKA (50S ribosomal protein L6P OS=Methanopyrus kandleri GN=rpl6p PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.330e-17
Identity = 54/187 (28.88%), Postives = 104/187 (55.61%), Query Frame = 1
Query:   97 ILSSETMDIPDGVKVKINAKV-----IEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLD--GVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636
            I+  E + I D V+++I+ +      + V+GP+G+++++F + ++   +  DE      + I A   +R+  A +    +++ N+  GVT+G+ YK++ VY+HFP    +      + I NF+GE   R A+++D     VI   +   ++++ G D E V ++AA + Q  ++K++D R F DGIY
Sbjct:   17 IVMEERVKIKDDVEIEISQREDRRYEVTVKGPKGEVTKEFYYPDVYLWVEDDE------VVIAATRSNRRQKAILGMIKAYIENMQKGVTEGHEYKLKLVYSHFPPEVKVDQKEGKVYIENFMGENVPRVAEIVDPENTEVIVQGQ---DIIVRGIDKEAVGQTAANLEQATYIKDRDPRVFQDGIY 194          
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_METBF (50S ribosomal protein L6P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.737e-17
Identity = 59/175 (33.71%), Postives = 94/175 (53.71%), Query Frame = 1
Query:  115 MDIPDGVKVKINAK-VIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636
            ++IP+G+ V  +   V    GP G + R   +  +  ++   E      +++DA    ++  A + T  SH+ NL+ GV +G+  KM  +YAHFP+   +  + K + I NFLGEKK R A +L G T ++     +E+ + G + E V ++AA I QK  +K  D R F DGIY
Sbjct:    9 IEIPEGISVSFSQDDVFTATGPLGTVERKLWYPGIKIYVRDGE------VEVDAESSRKEQKAMVGTFTSHIKNLMKGVNEGFECKMTILYAHFPMQVKV--DGKTLIIGNFLGEKKPRIAKIL-GETKVKVS--GNEVTVSGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIY 172          
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_PYRAE (50S ribosomal protein L6P OS=Pyrobaculum aerophilum GN=rpl6p PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.276e-16
Identity = 53/169 (31.36%), Postives = 92/169 (54.44%), Query Frame = 1
Query:   88 MKTILSSETMDIPDGVKVKINAK-----VIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALI 579
            M+ + S E ++IP GV V I        +++V+GP G+++++FK+  +   L         K+ ++ +   ++  A + T    + N+  GVT+G+RYK++ +Y HFP+   +  N   IE  NFLG K     ++  GV V    K K+++V++G D ELVS  AA +
Sbjct:    1 MRVVYSVEEVEIPKGVSVSIERTGPFDYIVKVKGPLGEVTKEFKNTPVVMSLQDG------KIVMEVFKARKREYAILGTYKGILKNMFLGVTRGWRYKLKVIYTHFPMLVKVQGNQLVIE--NFLGRKSKITLNIPKGVKV--EVKGKEDIVIEGIDRELVSTFAAAV 159          
The following BLAST results are available for this feature:
BLAST of CK932923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RL6_METAC2.192e-2035.5650S ribosomal protein L6P OS=Methanosarcina acetiv... [more]
RL6_HALWD1.088e-1935.5250S ribosomal protein L6P OS=Haloquadratum walsbyi... [more]
RL6_HALSA1.856e-1932.1850S ribosomal protein L6P OS=Halobacterium salinar... [more]
RL6_NANEQ5.399e-1931.6450S ribosomal protein L6P OS=Nanoarchaeum equitans... [more]
RL6_NATPD7.052e-1936.2150S ribosomal protein L6P OS=Natronomonas pharaoni... [more]
RL6_HALMA1.203e-1834.4850S ribosomal protein L6P OS=Haloarcula marismortu... [more]
RL6_ARCFU1.571e-1831.3550S ribosomal protein L6P OS=Archaeoglobus fulgidu... [more]
RL6_METKA1.330e-1728.8850S ribosomal protein L6P OS=Methanopyrus kandleri... [more]
RL6_METBF1.737e-1733.7150S ribosomal protein L6P OS=Methanosarcina barker... [more]
RL6_PYRAE3.276e-1631.3650S ribosomal protein L6P OS=Pyrobaculum aerophilu... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004349_G10 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932923 ID=CK932923; Name=CK932923; organism=Citrus sinensis; type=EST; length=638bp
TACGGCCGGGGAGGGTTANNGNCTTTTGNNGGCTCTAGCTTAAGCGTAGG
AGGAGAAGAAGAAGGTAGATATTACAGAGAGAGGAAAATGAAGACAATTC
TCTCTTCAGAGACTATGGACATCCCAGATGGGGTGAAAGTCAAGATAAAT
GCAAAGGTTATTGAAGTAGAGGGACCGAGAGGTAAGCTCAGCCGCGACTT
CAAGCATTTGAACCTCGACTTCCATCTCATGACTGACGAGGAAACCGGTA
AGCGCAAGCTTAAGATCGATGCCTGGTTCGGCTCTCGCAAGACCAGCGCC
GCCATCAGAACTGCCCTCAGCCATGTCGGCAATCTCATCACTGGTGTTAC
CAAGGGCTATCGCTACAAGATGAGATTTGTGTACGCTCACTTTCCCATCA
ACGCCTCCATCGGTAACAATAACAAGGCCATTGAGATCCGTAACTTTCTT
GGAGAGAAAAAGGTTCGAAAAGCNGATATGCTTGATGGTGTTACCGTCAT
TAGGTCCGATAAGGTTAAGGATGAACTCGTTCTTGATGGAAATGACATTG
AACTCGTGTCTCGCTCTGCTGCTCTAATCAATCAGAAATGCCATGTGAAG
AACAAGGACATTAGGAAATTTCTTGATGGGATCTATGT
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