CK932923
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_METAC (50S ribosomal protein L6P OS=Methanosarcina acetivorans GN=rpl6p PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.192e-20 Identity = 64/180 (35.56%), Postives = 98/180 (54.44%), Query Frame = 1 Query: 106 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVK---DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636 + T++IP+GV V + V GP+G + R + + M D + G+ + +DA + ++ A + T SH+ NL+ GV +G+ KM VYAHFP+ + + K + I NFLGEKK R A +I KVK +++ + G + E V ++AA I QK +K D R F DGIY Sbjct: 6 ARTIEIPEGVSVSLAQDVFTATGPKGTVERKLWYPGI----MIDVKDGE--VVVDAEYARKEQKAMVGTFASHIRNLVKGVNEGFECKMSIVYAHFPMQVKV--DGKTLIIGNFLGEKKPRFA------KIIGETKVKVSGNDVTITGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIY 171
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_HALWD (50S ribosomal protein L6P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl6p PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.088e-19 Identity = 65/183 (35.52%), Postives = 98/183 (53.55%), Query Frame = 1 Query: 100 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSD---KVKDELV-LDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636 ++ ++IP+ V +++ + VEGP G ++R + ++ + DE+ + I+ KTSA + T SHV N+I GVT G+ Y+M YAHFP+ S+ + IE NFLGEK R+ T IR D ++ E+V L G E V ++AA I Q V +KD R F DG+Y Sbjct: 1 MTRTAIEIPENVSAEVSNLALTVEGPNGSVTRTLWYPSVT--VSVDEDADADAVVIETDETDAKTSATVGTFESHVSNMIHGVTDGWSYEMEVYYAHFPMQVSVEGDEVIIE--NFLGEKASRR-------TPIRGDTNVQIDGEMVTLTGPSKEDVGQTAADIEQLTRVTDKDTRIFQDGVY 172
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_HALSA (50S ribosomal protein L6P OS=Halobacterium salinarium GN=rpl6p PE=1 SV=3) HSP 1 Score: 95.9005 bits (237), Expect = 1.856e-19 Identity = 56/174 (32.18%), Postives = 93/174 (53.45%), Query Frame = 1 Query: 115 MDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636 ++IPD V +++ + VEGP G ++R + ++D + D + + + KT + + T SHV N+ GV++G+ YK+ Y+HFP+ + + + I+NFLGEK R+ + V+ D +E+ L G IE V ++AA I Q V +KD R F DG+Y Sbjct: 6 IEIPDDVTAEVDHLDLTVEGPEGSVTRRLWYPDVDVSVEDDA------VVVASEVDDAKTDSTVGTFESHVANMFHGVSEGWEYKLEVHYSHFPMQVDV--EGEEVVIQNFLGEKAARRTQIRGDTDVVVDD---EEVTLSGPSIEDVGQTAADIEQLTRVTDKDTRVFQDGVY 168
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_NANEQ (50S ribosomal protein L6P OS=Nanoarchaeum equitans GN=rpl6p PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 5.399e-19 Identity = 56/177 (31.64%), Postives = 93/177 (52.54%), Query Frame = 1 Query: 121 IPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKK--VRKADMLDGVTV-IRSDKVKDELVLDGNDIELVSRSAALINQKCHV--KNKDIRKFLDGIY 636 IP+ VKV +++V GP+G++ R F +H + K+ ++ +F +R+ I T SH+ N++ GV + Y+++ Y HFP+ + N +E NFLGEK +++ LD V V I +K + E+V++ D E A++I Q K KD R+F DGI+ Sbjct: 12 IPENVKVSYENNILKVSGPKGEVERKF------YHPLIKLSVNDNKIILETYFATRREKRLINTWRSHIKNMLEGVQNPFVYRLKVCYTHFPMRVKLEGNKLIVE--NFLGEKAPIIKELPYLDKVKVKIEQNKDETEIVVESPDKEKAGIVASMIEQSTRFLHKRKDRRRFTDGIW 180
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_NATPD (50S ribosomal protein L6P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl6p PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 7.052e-19 Identity = 63/174 (36.21%), Postives = 93/174 (53.45%), Query Frame = 1 Query: 115 MDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636 ++IPD V ++ + VEGP G ++R + ++ D E G ++ D + KT + + T SHV N+ GVT+G+ Y M Y+HFP+ S+ + I I NFLGEK RK + G T + D +EL + G IE V ++AA I Q V +KD R F DG+Y Sbjct: 5 IEIPDEVTATMDHLEVTVEGPNGSVTRRLWYPDIT----VDVEDGAVVIETDD--DNAKTRSTVGTFESHVTNMFHGVTEGWEYSMEVFYSHFPMQVSVEGGD--IVIENFLGEKAPRKTP-VRGDTSVEVD--GEELTVSGPSIEDVGQTAADIEQLTRVSDKDTRVFQDGVY 167
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_HALMA (50S ribosomal protein L6P OS=Haloarcula marismortui GN=rpl6p PE=1 SV=3) HSP 1 Score: 93.2041 bits (230), Expect = 1.203e-18 Identity = 60/174 (34.48%), Postives = 97/174 (55.75%), Query Frame = 1 Query: 115 MDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636 ++IP+ V + + I VEG G ++R + ++D + D +T + I++ + KT + I T SH+ N+ GVT+G+ Y M Y+HFP+ ++ + IE NFLGEK R+ + G T + D +EL + G DIE V ++AA I Q + +KD+R F DG+Y Sbjct: 6 LEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDID--VSVDGDT----VVIESDEDNAKTMSTIGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNVEGDEVVIE--NFLGEKAPRRT-TIHGDTDVEID--GEELTVSGPDIEAVGQTAADIEQLTRINDKDVRVFQDGVY 168
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_ARCFU (50S ribosomal protein L6P OS=Archaeoglobus fulgidus GN=rpl6p PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.571e-18 Identity = 58/185 (31.35%), Postives = 95/185 (51.35%), Query Frame = 1 Query: 97 ILSSETMDIPDGVKVKINAK-----VIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636 + +++P+ V++ I ++ GP+G+ +R K+ + E G K+++ +K A + T H+ NLITGV +G+ Y ++ VYAHFPI + N IE NF+GEK R+A ++ V S + ++ + G DIE ++AA + Q +K KD R F DGIY Sbjct: 18 VYEERVVEVPEDVQLTIEGDSFRGYTLKAVGPKGENTRYLKYRGVFI------EVGDGKVRVYTTSPKKKHKAMVGTFAGHIENLITGVKEGFEYHLKVVYAHFPIKVRVEGNEVIIE--NFIGEKHPRRAKIVGRAQVEISGQ---DIYVRGIDIEECGQTAANLEQATKIKRKDPRVFQDGIY 191
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_METKA (50S ribosomal protein L6P OS=Methanopyrus kandleri GN=rpl6p PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.330e-17 Identity = 54/187 (28.88%), Postives = 104/187 (55.61%), Query Frame = 1 Query: 97 ILSSETMDIPDGVKVKINAKV-----IEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLD--GVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636 I+ E + I D V+++I+ + + V+GP+G+++++F + ++ + DE + I A +R+ A + +++ N+ GVT+G+ YK++ VY+HFP + + I NF+GE R A+++D VI + ++++ G D E V ++AA + Q ++K++D R F DGIY Sbjct: 17 IVMEERVKIKDDVEIEISQREDRRYEVTVKGPKGEVTKEFYYPDVYLWVEDDE------VVIAATRSNRRQKAILGMIKAYIENMQKGVTEGHEYKLKLVYSHFPPEVKVDQKEGKVYIENFMGENVPRVAEIVDPENTEVIVQGQ---DIIVRGIDKEAVGQTAANLEQATYIKDRDPRVFQDGIY 194
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_METBF (50S ribosomal protein L6P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl6p PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.737e-17 Identity = 59/175 (33.71%), Postives = 94/175 (53.71%), Query Frame = 1 Query: 115 MDIPDGVKVKINAK-VIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636 ++IP+G+ V + V GP G + R + + ++ E +++DA ++ A + T SH+ NL+ GV +G+ KM +YAHFP+ + + K + I NFLGEKK R A +L G T ++ +E+ + G + E V ++AA I QK +K D R F DGIY Sbjct: 9 IEIPEGISVSFSQDDVFTATGPLGTVERKLWYPGIKIYVRDGE------VEVDAESSRKEQKAMVGTFTSHIKNLMKGVNEGFECKMTILYAHFPMQVKV--DGKTLIIGNFLGEKKPRIAKIL-GETKVKVS--GNEVTVSGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIY 172
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_PYRAE (50S ribosomal protein L6P OS=Pyrobaculum aerophilum GN=rpl6p PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.276e-16 Identity = 53/169 (31.36%), Postives = 92/169 (54.44%), Query Frame = 1 Query: 88 MKTILSSETMDIPDGVKVKINAK-----VIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALI 579 M+ + S E ++IP GV V I +++V+GP G+++++FK+ + L K+ ++ + ++ A + T + N+ GVT+G+RYK++ +Y HFP+ + N IE NFLG K ++ GV V K K+++V++G D ELVS AA + Sbjct: 1 MRVVYSVEEVEIPKGVSVSIERTGPFDYIVKVKGPLGEVTKEFKNTPVVMSLQDG------KIVMEVFKARKREYAILGTYKGILKNMFLGVTRGWRYKLKVIYTHFPMLVKVQGNQLVIE--NFLGRKSKITLNIPKGVKV--EVKGKEDIVIEGIDRELVSTFAAAV 159 The following BLAST results are available for this feature:
BLAST of CK932923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
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Sequences
The
following sequences are available for this feature:
EST sequence >CK932923 ID=CK932923; Name=CK932923; organism=Citrus sinensis; type=EST; length=638bpback to top |