CK932923

Overview
NameCK932923
Unique NameCK932923
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig187 contig Csv1_Contig187:1..612. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_PICTO (50S ribosomal protein L6P OS=Picrophilus torridus GN=rpl6p PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.054e-14
Identity = 52/173 (30.06%), Postives = 88/173 (50.87%), Query Frame = 1
Query:  121 IPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636
            +PD V+  +    ++++G  G+ SR F+   +  ++          +KI     ++ T   + T  S    LI GVTKG+ Y M+  + HFP+  S+  +   +E  NFLGEK  R A ++DG  V     VK D + ++G D   +  +AA I +  ++++ D R F DGI+
Sbjct:   12 LPDDVQATMENNELKIKGKLGEASRIFRDNYVKAYIEGSS------VKIATSKNNKYTKGIVGTWYSETKLLIEGVTKGFEYHMKIDFTHFPMRVSVRGDKLIVE--NFLGEKSPRSAKIVDGCKV----SVKGDRITINGIDKRKIGETAANIERATYIRHFDARVFQDGIF 172          
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_THEAC (50S ribosomal protein L6P OS=Thermoplasma acidophilum GN=rpl6p PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.797e-14
Identity = 54/178 (30.34%), Postives = 91/178 (51.12%), Query Frame = 1
Query:  106 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTV-IRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636
            + ++ IPDG KV I+   + +      +S++F   N    L+ D  T    +KI+A   +      + T  S + N+I G+  G++Y+M+  Y+HFP+  S+    K + I NF GE+  R A+++   TV ++ D+V     + G   + V  +AA I +   +K  D R F DGIY
Sbjct:    7 ARSIKIPDGFKVSISGTTVTISYGGKTISKNFA--NNYVKLVEDGST----IKINASKNNSMVRGIVGTWASEINNMIKGLKDGFQYEMKIDYSHFPMRVSV--KGKTVVIENFFGERSPRTAEIVGDTTVTVKGDRV----YIAGISKKDVGETAANIERSTIIKGFDPRVFQDGIY 172          
BLAST of CK932923 vs. ExPASy Swiss-Prot
Match: RL6_THEVO (50S ribosomal protein L6P OS=Thermoplasma volcanium GN=rpl6p PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.288e-12
Identity = 51/178 (28.65%), Postives = 90/178 (50.56%), Query Frame = 1
Query:  106 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKADMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 636
            +  ++IP  VKV ++  ++ +     KL + F    +   L+ ++     K+KI     + +    + T  S + N++ G+ +G++Y+M+  Y+HFP+  S+    K + I NF GE+  R A+++    V     VK D L L+G   + V  +AA I +   +K  D R F DGIY
Sbjct:    7 ASVIEIPKDVKVGLSGTMLSMTFGNKKLEKKFADNYV--RLLVEDN----KIKIVKSKNNSRERGIVGTWASEISNMVKGLKEGFQYEMKIDYSHFPMRVSV--KGKTVVIENFFGERSPRTAEIVGETQV----SVKGDRLFLNGPSKKDVGETAANIERATIIKGFDPRVFQDGIY 172          
The following BLAST results are available for this feature:
BLAST of CK932923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RL6_PICTO1.054e-1430.0650S ribosomal protein L6P OS=Picrophilus torridus ... [more]
RL6_THEAC1.797e-1430.3450S ribosomal protein L6P OS=Thermoplasma acidophi... [more]
RL6_THEVO1.288e-1228.6550S ribosomal protein L6P OS=Thermoplasma volcaniu... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004349_G10 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932923 ID=CK932923; Name=CK932923; organism=Citrus sinensis; type=EST; length=638bp
TACGGCCGGGGAGGGTTANNGNCTTTTGNNGGCTCTAGCTTAAGCGTAGG
AGGAGAAGAAGAAGGTAGATATTACAGAGAGAGGAAAATGAAGACAATTC
TCTCTTCAGAGACTATGGACATCCCAGATGGGGTGAAAGTCAAGATAAAT
GCAAAGGTTATTGAAGTAGAGGGACCGAGAGGTAAGCTCAGCCGCGACTT
CAAGCATTTGAACCTCGACTTCCATCTCATGACTGACGAGGAAACCGGTA
AGCGCAAGCTTAAGATCGATGCCTGGTTCGGCTCTCGCAAGACCAGCGCC
GCCATCAGAACTGCCCTCAGCCATGTCGGCAATCTCATCACTGGTGTTAC
CAAGGGCTATCGCTACAAGATGAGATTTGTGTACGCTCACTTTCCCATCA
ACGCCTCCATCGGTAACAATAACAAGGCCATTGAGATCCGTAACTTTCTT
GGAGAGAAAAAGGTTCGAAAAGCNGATATGCTTGATGGTGTTACCGTCAT
TAGGTCCGATAAGGTTAAGGATGAACTCGTTCTTGATGGAAATGACATTG
AACTCGTGTCTCGCTCTGCTGCTCTAATCAATCAGAAATGCCATGTGAAG
AACAAGGACATTAGGAAATTTCTTGATGGGATCTATGT
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