CK932927

Overview
NameCK932927
Unique NameCK932927
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11749 contig Csv1_Contig11749:1096..1848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932927 vs. ExPASy Swiss-Prot
Match: ARFD_ARATH (Auxin response factor 4 OS=Arabidopsis thaliana GN=ARF4 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.360e-17
Identity = 44/95 (46.32%), Postives = 60/95 (63.16%), Query Frame = 1
Query:   16 LYNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSFSSKGEDSPMNGDGIDAKEVKQP 300
            L  YD+L+ EL++LF  +G L  P+K W I+YTD E DMM+VGDDPW +FC +V KI +YTKEEV   N  + S   E + +  +   +  V QP
Sbjct:  686 LNGYDDLLMELERLFNMEGLLRDPEKGWRILYTDSENDMMVVGDDPWHDFCNVVWKIHLYTKEEVENANDDNKSCL-EQAALMMEASKSSSVSQP 779          
BLAST of CK932927 vs. ExPASy Swiss-Prot
Match: ARFN_ARATH (Putative auxin response factor 14 OS=Arabidopsis thaliana GN=ARF14 PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.812e-16
Identity = 39/70 (55.71%), Postives = 52/70 (74.29%), Query Frame = 1
Query:   16 LYNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNS 225
            L  YD+LI EL++LF+  G+L A +  W I +T++E D MLVG+DPW EFC MV+KIFIY+KEEV  + S
Sbjct:  531 LNGYDQLILELEKLFDLKGQLQA-RNQWEIAFTNNEEDKMLVGEDPWPEFCNMVKKIFIYSKEEVKNLKS 599          
BLAST of CK932927 vs. ExPASy Swiss-Prot
Match: ARFI_ORYSJ (Auxin response factor 9 OS=Oryza sativa subsp. japonica GN=ARF9 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.914e-16
Identity = 35/64 (54.69%), Postives = 48/64 (75.00%), Query Frame = 1
Query:   16 LYNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEE 207
            L  Y +L ++L+++F+  G+L    K W +VYTDDE DMMLVGDDPW EFC MV++I+IY+ EE
Sbjct:  568 LNGYGDLRSKLEEMFDIQGDLCPTLKRWQVVYTDDEDDMMLVGDDPWDEFCSMVKRIYIYSYEE 631          
BLAST of CK932927 vs. ExPASy Swiss-Prot
Match: ARFU_ARATH (Putative auxin response factor 21 OS=Arabidopsis thaliana GN=ARF21 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 6.426e-15
Identity = 38/70 (54.29%), Postives = 49/70 (70.00%), Query Frame = 1
Query:   16 LYNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNS 225
            L  YD+LI EL++LF+  G+L   +  W I +TD +G  MLVGDDPW EFC MV+KI IY+KEEV  + S
Sbjct:  532 LNGYDQLILELEKLFDIKGQLQT-RNQWKIAFTDSDGYEMLVGDDPWPEFCKMVKKILIYSKEEVKNLKS 600          
BLAST of CK932927 vs. ExPASy Swiss-Prot
Match: ARFT_ARATH (Auxin response factor 20 OS=Arabidopsis thaliana GN=ARF20 PE=2 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 6.426e-15
Identity = 38/70 (54.29%), Postives = 49/70 (70.00%), Query Frame = 1
Query:   16 LYNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNS 225
            L  YD+LI EL++LF+  G+L   +  W I +TD +G  MLVGDDPW EFC MV+KI IY+KEEV  + S
Sbjct:  516 LNGYDQLILELEKLFDLKGQLQT-RNQWKIAFTDSDGYEMLVGDDPWPEFCKMVKKILIYSKEEVKNLKS 584          
BLAST of CK932927 vs. ExPASy Swiss-Prot
Match: ARFM_ARATH (Auxin response factor 13 OS=Arabidopsis thaliana GN=ARF13 PE=2 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.583e-13
Identity = 34/68 (50.00%), Postives = 50/68 (73.53%), Query Frame = 1
Query:   16 LYNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKM 219
            ++ Y++LI +L++LF+   EL   +  W IV+T++EG  MLVGDDPW EFC M ++IFI +KEE+ KM
Sbjct:  529 MHGYNQLIQKLEELFDLKDELRT-RNQWEIVFTNNEGAEMLVGDDPWPEFCNMAKRIFICSKEEIKKM 595          
BLAST of CK932927 vs. ExPASy Swiss-Prot
Match: ARFV_ARATH (Auxin response factor 22 OS=Arabidopsis thaliana GN=ARF22 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.750e-12
Identity = 32/62 (51.61%), Postives = 43/62 (69.35%), Query Frame = 1
Query:   16 LYNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTK 201
            L  YD+LI EL++LF+  G+L   +  W I +TD + D MLVGDDPW EFC MV+KI I+ +
Sbjct:  530 LNGYDQLILELEELFDLKGQLQT-RNQWEIAFTDSDDDKMLVGDDPWPEFCNMVKKILIFKR 590          
BLAST of CK932927 vs. ExPASy Swiss-Prot
Match: ARFL_ARATH (Auxin response factor 12 OS=Arabidopsis thaliana GN=ARF12 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.750e-12
Identity = 33/59 (55.93%), Postives = 42/59 (71.19%), Query Frame = 1
Query:   16 LYNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFI 192
            L  YD+LI EL++LF+  G+L   +  W I +TD + D MLVGDDPW EFC MV+KIFI
Sbjct:  532 LNGYDQLILELEKLFDIKGQLQT-RNQWEIAFTDSDEDKMLVGDDPWPEFCNMVKKIFI 589          
BLAST of CK932927 vs. ExPASy Swiss-Prot
Match: ARFO_ARATH (Putative auxin response factor 15 OS=Arabidopsis thaliana GN=ARF15 PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.300e-11
Identity = 30/59 (50.85%), Postives = 42/59 (71.19%), Query Frame = 1
Query:   16 LYNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFI 192
            L  YD+LI EL++LF+  G+L   +  W I++T  + D MLVGDDPW EFC MV++I+I
Sbjct:  532 LNGYDQLILELEKLFDLKGQLQT-RNQWKIIFTGSDEDEMLVGDDPWPEFCNMVKRIYI 589          
BLAST of CK932927 vs. ExPASy Swiss-Prot
Match: ARFA_ORYSJ (Auxin response factor 1 OS=Oryza sativa subsp. japonica GN=ARF1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.352e-11
Identity = 32/68 (47.06%), Postives = 45/68 (66.18%), Query Frame = 1
Query:   16 LYNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKM 219
            L  Y++L+ EL+++F     +   K+ W + +TDDEGD M VGDDPW EFC MVRKI +Y  E+  K+
Sbjct:  616 LDGYEQLMNELEEMFN----IKDLKQKWKVAFTDDEGDTMEVGDDPWLEFCQMVRKIVLYPIEDEKKI 679          
The following BLAST results are available for this feature:
BLAST of CK932927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
ARFD_ARATH2.360e-1746.32Auxin response factor 4 OS=Arabidopsis thaliana GN... [more]
ARFN_ARATH5.812e-1655.71Putative auxin response factor 14 OS=Arabidopsis t... [more]
ARFI_ORYSJ9.914e-1654.69Auxin response factor 9 OS=Oryza sativa subsp. jap... [more]
ARFU_ARATH6.426e-1554.29Putative auxin response factor 21 OS=Arabidopsis t... [more]
ARFT_ARATH6.426e-1554.29Auxin response factor 20 OS=Arabidopsis thaliana G... [more]
ARFM_ARATH1.583e-1350.00Auxin response factor 13 OS=Arabidopsis thaliana G... [more]
ARFV_ARATH1.750e-1251.61Auxin response factor 22 OS=Arabidopsis thaliana G... [more]
ARFL_ARATH1.750e-1255.93Auxin response factor 12 OS=Arabidopsis thaliana G... [more]
ARFO_ARATH3.300e-1150.85Putative auxin response factor 15 OS=Arabidopsis t... [more]
ARFA_ORYSJ7.352e-1147.06Auxin response factor 1 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004349_H04 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932927 ID=CK932927; Name=CK932927; organism=Citrus sinensis; type=EST; length=753bp
GGGGGATCTTTCTACCTTTACAACTATGACGAATTGATTGCCGAACTGGA
TCAGTTATTTGAATTTGATGGTGAATTAATGGCTCCCAAGAAAAATTGGA
TTATTGTATATACTGATGATGAGGGTGACATGATGCTTGTTGGAGATGAT
CCATGGCAGGAGTTTTGTGGTATGGTACGCAAAATTTTCATCTACACAAA
AGAGGAGGTCCTGAAGATGAACTCAGTGTCTTTTAGCTCGAAGGGTGAGG
ATAGTCCAATGAATGGGGACGGCATTGATGCAAAAGAAGTGAAACAGCCA
CTTCCTTTAGCATCCAATGCAGAGAATTTTTAGGTGTGGTTTTGATGGTT
CAAGGTTTTGTTGCAGCATCAGAAAGAAGATATTCAGGGCATTCTATTTT
GGATTATGAACTAATAGATGGATGTCAATCCTCCTCGTAGACGGCATGAC
TATCCAATTTTGGGCATGGTATATGGTGTCCGACTCATATAATACATTCA
ATATGTATACCCCCTATTTTGAGCATGGCAATTCTAGCTTTTGCTTTCCC
GAACGATCCCTTTTTGTACATAGTTGTTTACCCCTCTTTTCCAACCTCTT
AATGTAAGTAGCCTAAGTTTTATACATCTTCTGGTGCCTTCTTGGGAAAG
CCTACAGGCATATGTTTGTTTTGTTGGCTTTCTGTTCGCGGATCTCCATT
CACTAGGATTTTTAGCAGGTGTAGTAAGGGCTAATGACTTTGTAAGTCTT
TGC
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