CK932929 | Citrus Genome Database

Overview


Name	CK932929
Unique Name	CK932929
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	705

Libraries


Library Name	Type
Developing fruit juice sac at 38 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
CK932929_ssr15	microsatellite	CK932929_ssr15:15..26.	BLAST: Citrus ESTs to Prunus persica proteins V1

Homology

[Close]

BLAST of CK932929 vs. ExPASy Swiss-Prot
Match: RAB1A_CANFA (Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3)

HSP 1 Score: 308.916 bits (790), Expect = 1.695e-83
Identity = 149/173 (86.13%), Postives = 160/173 (92.49%), Query Frame = 1

Query:  142 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDLKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRM 660
            MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y +SYISTIGVD KIRT+E DGKT+KLQIWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYASENVNKLLVGNKCDLT KKVV Y TAK FAD +GIPF+ETSAK++ NVEQ+FM M A+IK RM
Sbjct:    4 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 176

[Close]

BLAST of CK932929 vs. ExPASy Swiss-Prot
Match: RAB1A_PIG (Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3)

HSP 1 Score: 306.22 bits (783), Expect = 1.098e-82
Identity = 148/173 (85.55%), Postives = 159/173 (91.91%), Query Frame = 1

Query:  142 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDLKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRM 660
            MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y +SYISTIGVD KIRT+E DGKT+KLQIWDTAGQERFRTITSSYYRGAHGII+VYDVTDQ SFNNVKQWL EIDRYASENVNKLLVGNKCDLT KKVV Y TAK FAD +GIPF+ETSAK++ NVEQ+FM M A+IK RM
Sbjct:    4 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQGSFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 176

[Close]

BLAST of CK932929 vs. ExPASy Swiss-Prot
Match: RAB1B_PONAB (Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1B PE=2 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 1.586e-81
Identity = 149/184 (80.98%), Postives = 160/184 (86.96%), Query Frame = 1

Query:  142 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDLKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARP 693
            MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y +SYISTIGVD KIRT+E DGKT+KLQIWDTAGQERFRTITSSYYRGAHGII+VYDVTDQES+ NVKQWL EIDRYASENVNKLLVGNK DLT KKVV   TAK FAD +GIPF+ETSAK++ NVEQAFM M A+IK RM    A    RP
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERP 184

[Close]

BLAST of CK932929 vs. ExPASy Swiss-Prot
Match: RAB1B_HUMAN (Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1B PE=1 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 1.586e-81
Identity = 149/184 (80.98%), Postives = 160/184 (86.96%), Query Frame = 1

Query:  142 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDLKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARP 693
            MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y +SYISTIGVD KIRT+E DGKT+KLQIWDTAGQERFRTITSSYYRGAHGII+VYDVTDQES+ NVKQWL EIDRYASENVNKLLVGNK DLT KKVV   TAK FAD +GIPF+ETSAK++ NVEQAFM M A+IK RM    A    RP
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERP 184

[Close]

BLAST of CK932929 vs. ExPASy Swiss-Prot
Match: RAB1B_BOVIN (Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B PE=2 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 1.586e-81
Identity = 149/184 (80.98%), Postives = 160/184 (86.96%), Query Frame = 1

Query:  142 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDLKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARP 693
            MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y +SYISTIGVD KIRT+E DGKT+KLQIWDTAGQERFRTITSSYYRGAHGII+VYDVTDQES+ NVKQWL EIDRYASENVNKLLVGNK DLT KKVV   TAK FAD +GIPF+ETSAK++ NVEQAFM M A+IK RM    A    RP
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERP 184

[Close]

BLAST of CK932929 vs. ExPASy Swiss-Prot
Match: RAB1B_MOUSE (Ras-related protein Rab-1B OS=Mus musculus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 2.071e-81
Identity = 148/184 (80.43%), Postives = 160/184 (86.96%), Query Frame = 1

Query:  142 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDLKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARP 693
            MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y +SYISTIGVD KIRT+E DGKT+KLQIWDTAGQERFRTITSSYYRGAHGII+VYDVTDQES+ NVKQWL EIDRYASENVNKLLVGNK DLT KKVV   TAK FAD +G+PF+ETSAK++ NVEQAFM M A+IK RM    A    RP
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERP 184

[Close]

BLAST of CK932929 vs. ExPASy Swiss-Prot
Match: RAB1B_RAT (Ras-related protein Rab-1B OS=Rattus norvegicus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 301.597 bits (771), Expect = 2.705e-81
Identity = 147/184 (79.89%), Postives = 160/184 (86.96%), Query Frame = 1

Query:  142 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDLKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARP 693
            MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y +SYISTIGVD KIRT+E DGKT+KLQIWDTAGQERFRT+TSSYYRGAHGII+VYDVTDQES+ NVKQWL EIDRYASENVNKLLVGNK DLT KKVV   TAK FAD +G+PF+ETSAK++ NVEQAFM M A+IK RM    A    RP
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTVTSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERP 184

[Close]

BLAST of CK932929 vs. ExPASy Swiss-Prot
Match: YPT1_NEUCR (GTP-binding protein ypt1 OS=Neurospora crassa GN=ypt-1 PE=3 SV=1)

HSP 1 Score: 301.212 bits (770), Expect = 3.533e-81
Identity = 146/183 (79.78%), Postives = 159/183 (86.89%), Query Frame = 1

Query:  142 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDLKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNAR 690
            MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y +SYISTIGVD KIRT+E DGKTVKLQIWDTAGQERFRTITSSYYRGAHGI +VYDVTD +SFNNVKQWL EIDRYA+E VNKLLVGNK D+TDKKVV Y  AK FAD +GIPF+ETSAK++ NVEQAF+ M   IK RM S  A NN +
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGICVVYDVTDMDSFNNVKQWLQEIDRYATEGVNKLLVGNKSDMTDKKVVEYTVAKEFADSLGIPFLETSAKNASNVEQAFLTMARQIKERMGSSIATNNTK 183

[Close]

BLAST of CK932929 vs. ExPASy Swiss-Prot
Match: RAB1B_MACFA (Ras-related protein Rab-1B OS=Macaca fascicularis GN=RAB1B PE=2 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 4.615e-81
Identity = 148/184 (80.43%), Postives = 160/184 (86.96%), Query Frame = 1

Query:  142 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDLKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARP 693
            MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y +SYISTIGVD KIRT+E DGKT+KLQIWDTAGQERFRTITSSYYRGAHGII+VYDVTD+ES+ NVKQWL EIDRYASENVNKLLVGNK DLT KKVV   TAK FAD +GIPF+ETSAK++ NVEQAFM M A+IK RM    A    RP
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDRESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERP 184

[Close]

BLAST of CK932929 vs. ExPASy Swiss-Prot
Match: RAB1B_PIG (Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B PE=2 SV=1)

HSP 1 Score: 298.901 bits (764), Expect = 1.754e-80
Identity = 148/184 (80.43%), Postives = 159/184 (86.41%), Query Frame = 1

Query:  142 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDLKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARP 693
            MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y +SYISTIGVD KIRT+E DGKT+KLQIWDTAGQER RTITSSYYRGAHGII+VYDVTDQES+ NVKQWL EIDRYASENVNKLLVGNK DLT KKVV   TAK FAD +GIPF+ETSAK++ NVEQAFM M A+IK RM    A    RP
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERGRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERP 184

The following BLAST results are available for this feature:

BLAST of CK932929 vs. ExPASy Swiss-Prot

BLAST of CK932929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
RAB1A_CANFA	1.695e-83	86.13	Ras-related protein Rab-1A OS=Canis familiaris GN=...	[more]
RAB1A_PIG	1.098e-82	85.55	Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A ...	[more]
RAB1B_PONAB	1.586e-81	80.98	Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1...	[more]
RAB1B_HUMAN	1.586e-81	80.98	Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1...	[more]
RAB1B_BOVIN	1.586e-81	80.98	Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B ...	[more]
RAB1B_MOUSE	2.071e-81	80.43	Ras-related protein Rab-1B OS=Mus musculus GN=Rab1...	[more]
RAB1B_RAT	2.705e-81	79.89	Ras-related protein Rab-1B OS=Rattus norvegicus GN...	[more]
YPT1_NEUCR	3.533e-81	79.78	GTP-binding protein ypt1 OS=Neurospora crassa GN=y...	[more]
RAB1B_MACFA	4.615e-81	80.43	Ras-related protein Rab-1B OS=Macaca fascicularis ...	[more]
RAB1B_PIG	1.754e-80	80.43	Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B ...	[more]

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Properties


Property Name	Value
Genbank description	CGF1004349_H06 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_H06 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK932929 ID=CK932929; Name=CK932929; organism=Citrus sinensis; type=EST; length=705bp
GGGGATCATCGACATCTTTCTTTCTTCGTCAAATTCTCTCTCAATCTCAC
CTCCTTAGCTTGTCTGTGCCAAACTCCCGGTCCAATCTCCAGCTGGACCG
GTTCGATTCTGCGCGAACCCCCTCAACATCTTATTGCAGTCATGAATCCT
GAATATGACTACTTGTTCAAGCTTTTGCTGATTGGAGACTCTGGAGTCGG
CAAATCGTGTCTTCTTCTGAGATTTGCTGATGATTCGTACCTGGACAGTT
ACATTAGCACTATTGGGGTTGACCTTAAAATTCGCACAGTGGAGCAAGAC
GGGAAGACTGTAAAACTCCAAATTTGGGACACTGCAGGGCAAGAACGATT
CAGGACAATCACTAGCAGCTACTACCGTGGAGCACATGGCATTATCATTG
TTTATGATGTTACAGACCAAGAGAGCTTCAACAACGTTAAGCAGTGGTTG
AATGAAATTGATCGCTATGCAAGTGAAAATGTAAACAAGCTTCTGGTTGG
AAACAAGTGTGATCTCACTGATAAGAAGGTTGTCTCTTATGAAACAGCGA
AGGCATTTGCTGATGAAATTGGCATCCCGTTCATGGAGACCAGCGCAAAG
GATTCTATGAACGTGGAACAAGCTTTTATGGCTATGACTGCTGACATTAA
GAACAGGATGGCAAGTCAACCTGCAATGAACAATGCAAGGCCACCAACTA
TGCAG