CK932929

Overview
NameCK932929
Unique NameCK932929
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK932929_ssr15 microsatellite CK932929_ssr15:15..26. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK932929 vs. ExPASy Swiss-Prot
Match: RAB8B_HUMAN (Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 1.445e-58
Identity = 102/173 (58.96%), Postives = 139/173 (80.35%), Query Frame = 1
Query:  142 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDLKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRM 660
            M   YDYLFKLLLIGDSGVGK+CLL RF++D++  ++ISTIG+D KIRT+E DGK +KLQIWDTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N+K W+  I+ +AS +V ++++GNKCD+ DK+ VS E  +  A + GI F+ETSAK S NVE+AF  +  DI  ++
Sbjct:    1 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKL 173          
BLAST of CK932929 vs. ExPASy Swiss-Prot
Match: RAB8A_RAT (Ras-related protein Rab-8A OS=Rattus norvegicus GN=Rab8a PE=2 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 1.445e-58
Identity = 103/173 (59.54%), Postives = 140/173 (80.92%), Query Frame = 1
Query:  142 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDLKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRM 660
            M   YDYLFKLLLIGDSGVGK+C+L RF++D++  ++ISTIG+D KIRT+E DGK +KLQIWDTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N++ W+  I+ +AS +V K+++GNKCD+ DK+ VS E  +  A + GI FMETSAK ++NVE AF  +  DIK +M
Sbjct:    1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 173          
BLAST of CK932929 vs. ExPASy Swiss-Prot
Match: RAB8A_MOUSE (Ras-related protein Rab-8A OS=Mus musculus GN=Rab8a PE=1 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 1.445e-58
Identity = 103/173 (59.54%), Postives = 140/173 (80.92%), Query Frame = 1
Query:  142 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDLKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRM 660
            M   YDYLFKLLLIGDSGVGK+C+L RF++D++  ++ISTIG+D KIRT+E DGK +KLQIWDTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N++ W+  I+ +AS +V K+++GNKCD+ DK+ VS E  +  A + GI FMETSAK ++NVE AF  +  DIK +M
Sbjct:    1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 173          
BLAST of CK932929 vs. ExPASy Swiss-Prot
Match: RAB8A_MACFA (Ras-related protein Rab-8A OS=Macaca fascicularis GN=RAB8A PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.445e-58
Identity = 103/173 (59.54%), Postives = 140/173 (80.92%), Query Frame = 1
Query:  142 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDLKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRM 660
            M   YDYLFKLLLIGDSGVGK+C+L RF++D++  ++ISTIG+D KIRT+E DGK +KLQIWDTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N++ W+  I+ +AS +V K+++GNKCD+ DK+ VS E  +  A + GI FMETSAK ++NVE AF  +  DIK +M
Sbjct:    1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 173          
BLAST of CK932929 vs. ExPASy Swiss-Prot
Match: RAB8A_HUMAN (Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8A PE=1 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.445e-58
Identity = 103/173 (59.54%), Postives = 140/173 (80.92%), Query Frame = 1
Query:  142 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDLKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRM 660
            M   YDYLFKLLLIGDSGVGK+C+L RF++D++  ++ISTIG+D KIRT+E DGK +KLQIWDTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N++ W+  I+ +AS +V K+++GNKCD+ DK+ VS E  +  A + GI FMETSAK ++NVE AF  +  DIK +M
Sbjct:    1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 173          
BLAST of CK932929 vs. ExPASy Swiss-Prot
Match: RAB8A_CANFA (Ras-related protein Rab-8A OS=Canis familiaris GN=RAB8A PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.445e-58
Identity = 103/173 (59.54%), Postives = 140/173 (80.92%), Query Frame = 1
Query:  142 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDLKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRM 660
            M   YDYLFKLLLIGDSGVGK+C+L RF++D++  ++ISTIG+D KIRT+E DGK +KLQIWDTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N++ W+  I+ +AS +V K+++GNKCD+ DK+ VS E  +  A + GI FMETSAK ++NVE AF  +  DIK +M
Sbjct:    1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 173          
BLAST of CK932929 vs. ExPASy Swiss-Prot
Match: RAB8A_BOVIN (Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.887e-58
Identity = 103/173 (59.54%), Postives = 140/173 (80.92%), Query Frame = 1
Query:  142 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDLKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRM 660
            M   YDYLFKLLLIGDSGVGK+C+L RF++D++  ++ISTIG+D KIRT+E DGK +KLQIWDTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N++ W+  I+ +AS +V K+++GNKCD+ DK+ VS E  +  A + GI FMETSAK ++NVE AF  +  DIK +M
Sbjct:    1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFYTLARDIKAKM 173          
BLAST of CK932929 vs. ExPASy Swiss-Prot
Match: RAB13_BOVIN (Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.203e-58
Identity = 105/186 (56.45%), Postives = 142/186 (76.34%), Query Frame = 1
Query:  142 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDLKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPT 699
            M   YD+LFKLLLIGDSGVGK+CL++RFA+D++ ++YISTIG+D +IRTV+ +GK +KLQ+WDTAGQERF+TIT++YYRGA GII+VYD+TD++SF N++ W+  I   AS  V +LL+GNKCD+  K+ V  E A   A E GI F ETSAK SMNV++AF ++  DI  +   +   NN +PP+
Sbjct:    1 MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFRIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRLKNNNKPPS 186          
BLAST of CK932929 vs. ExPASy Swiss-Prot
Match: RAB8_DISOM (Ras-related protein Rab-8 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 5.489e-58
Identity = 102/173 (58.96%), Postives = 140/173 (80.92%), Query Frame = 1
Query:  142 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDLKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRM 660
            M   YDYLFKLLLIGDSGVGK+CLL RF++D++  ++ISTIG+D KIRTVE DGK +KLQIWDTAGQERFRTIT++YYRGA GI+ VYD+T+++SF+N+K W+  I+ +AS +V ++++GNKCD+ +K+ VS E  +  A + GI F+ETSAK S+NVE+AF+ +  DI  ++
Sbjct:    1 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTVELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMKVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNEKRQVSKERGEKLAIDYGIKFLETSAKSSINVEEAFITLARDIMTKL 173          
BLAST of CK932929 vs. ExPASy Swiss-Prot
Match: RAB13_HUMAN (Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 9.363e-58
Identity = 105/186 (56.45%), Postives = 142/186 (76.34%), Query Frame = 1
Query:  142 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDLKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPT 699
            M   YD+LFKLLLIGDSGVGK+CL++RFA+D++ ++YISTIG+D KIRTV+ +GK +KLQ+WDTAGQERF+TIT++YYRGA GII+VYD+TD++SF N++ W+  I   AS  V +LL+GNKCD+  K+ V  E A   A E GI F ETSAK SMNV++AF ++  DI  +   + + N  +PP+
Sbjct:    1 MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRSGNGNKPPS 186          
The following BLAST results are available for this feature:
BLAST of CK932929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB8B_HUMAN1.445e-5858.96Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8... [more]
RAB8A_RAT1.445e-5859.54Ras-related protein Rab-8A OS=Rattus norvegicus GN... [more]
RAB8A_MOUSE1.445e-5859.54Ras-related protein Rab-8A OS=Mus musculus GN=Rab8... [more]
RAB8A_MACFA1.445e-5859.54Ras-related protein Rab-8A OS=Macaca fascicularis ... [more]
RAB8A_HUMAN1.445e-5859.54Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8... [more]
RAB8A_CANFA1.445e-5859.54Ras-related protein Rab-8A OS=Canis familiaris GN=... [more]
RAB8A_BOVIN1.887e-5859.54Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A ... [more]
RAB13_BOVIN4.203e-5856.45Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 ... [more]
RAB8_DISOM5.489e-5858.96Ras-related protein Rab-8 OS=Discopyge ommata PE=2... [more]
RAB13_HUMAN9.363e-5856.45Ras-related protein Rab-13 OS=Homo sapiens GN=RAB1... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004349_H06 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932929 ID=CK932929; Name=CK932929; organism=Citrus sinensis; type=EST; length=705bp
GGGGATCATCGACATCTTTCTTTCTTCGTCAAATTCTCTCTCAATCTCAC
CTCCTTAGCTTGTCTGTGCCAAACTCCCGGTCCAATCTCCAGCTGGACCG
GTTCGATTCTGCGCGAACCCCCTCAACATCTTATTGCAGTCATGAATCCT
GAATATGACTACTTGTTCAAGCTTTTGCTGATTGGAGACTCTGGAGTCGG
CAAATCGTGTCTTCTTCTGAGATTTGCTGATGATTCGTACCTGGACAGTT
ACATTAGCACTATTGGGGTTGACCTTAAAATTCGCACAGTGGAGCAAGAC
GGGAAGACTGTAAAACTCCAAATTTGGGACACTGCAGGGCAAGAACGATT
CAGGACAATCACTAGCAGCTACTACCGTGGAGCACATGGCATTATCATTG
TTTATGATGTTACAGACCAAGAGAGCTTCAACAACGTTAAGCAGTGGTTG
AATGAAATTGATCGCTATGCAAGTGAAAATGTAAACAAGCTTCTGGTTGG
AAACAAGTGTGATCTCACTGATAAGAAGGTTGTCTCTTATGAAACAGCGA
AGGCATTTGCTGATGAAATTGGCATCCCGTTCATGGAGACCAGCGCAAAG
GATTCTATGAACGTGGAACAAGCTTTTATGGCTATGACTGCTGACATTAA
GAACAGGATGGCAAGTCAACCTGCAATGAACAATGCAAGGCCACCAACTA
TGCAG
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