CK932929

Overview
NameCK932929
Unique NameCK932929
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK932929_ssr15 microsatellite CK932929_ssr15:15..26. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK932929 vs. ExPASy Swiss-Prot
Match: RAB3C_BOVIN (Ras-related protein Rab-3C OS=Bos taurus GN=RAB3C PE=2 SV=3)

HSP 1 Score: 198.364 bits (503), Expect = 3.225e-50
Identity = 90/186 (48.39%), Postives = 138/186 (74.19%), Query Frame = 1
Query:  154 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDLKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMA----SQPAMNNARPPT 699
            +DY+FKLL+IG+S VGK+  L R+ADDS+  +++ST+G+D K++TV ++ K +KLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   +LVGNKCD+ D++V+S E  +   +++G  F ETSAKD++NV+Q F  +   I ++M+    + PA+  A+  T
Sbjct:   27 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESLETDPAITAAKQNT 212          
BLAST of CK932929 vs. ExPASy Swiss-Prot
Match: RAB3C_RAT (Ras-related protein Rab-3C OS=Rattus norvegicus GN=Rab3c PE=1 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.213e-50
Identity = 90/186 (48.39%), Postives = 137/186 (73.66%), Query Frame = 1
Query:  154 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDLKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMA----SQPAMNNARPPT 699
            +DY+FKLL+IG+S VGK+  L R+ADDS+  +++ST+G+D K++TV ++ K +KLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   +L GNKCD+ D++VVS E  +   +++G  F ETSAKD++NV+Q F  +   I ++M+    + PA+  A+  T
Sbjct:   27 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILAGNKCDMEDERVVSTERGQRLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESLETDPAITAAKQST 212          
BLAST of CK932929 vs. ExPASy Swiss-Prot
Match: RAB3C_MOUSE (Ras-related protein Rab-3C OS=Mus musculus GN=Rab3c PE=1 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.213e-50
Identity = 90/186 (48.39%), Postives = 137/186 (73.66%), Query Frame = 1
Query:  154 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDLKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMA----SQPAMNNARPPT 699
            +DY+FKLL+IG+S VGK+  L R+ADDS+  +++ST+G+D K++TV ++ K +KLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   +L GNKCD+ D++VVS E  +   +++G  F ETSAKD++NV+Q F  +   I ++M+    + PA+  A+  T
Sbjct:   27 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILAGNKCDMEDERVVSTERGQRLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESLETDPAITAAKQST 212          
BLAST of CK932929 vs. ExPASy Swiss-Prot
Match: SEC4_CANAL (Ras-related protein SEC4 OS=Candida albicans GN=SEC4 PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.502e-50
Identity = 90/168 (53.57%), Postives = 123/168 (73.21%), Query Frame = 1
Query:  154 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDLKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNR 657
            YD + KLLL+GDSGVGKSCLLLRF +D +  S+I+TIG+D KIRT+E  GK +KLQ+WDTAGQERFRTIT++YYRGA GI+++YDVTD  SF NV+ W   + ++A+E+    LVGNKCD    + VS E  +  A ++ +PF+E SAK + NV+  F  + + I+ +
Sbjct:   11 YDMIMKLLLVGDSGVGKSCLLLRFVEDKFNPSFITTIGIDFKIRTIESKGKRIKLQVWDTAGQERFRTITTAYYRGAMGIVLIYDVTDSRSFENVENWFQTVTQHANEDAQIFLVGNKCDDEVNRQVSKEQGQELAAKLNVPFLEASAKSNENVDSIFYELASIIQEK 178          
BLAST of CK932929 vs. ExPASy Swiss-Prot
Match: RAB3D_MOUSE (Ras-related protein Rab-3D OS=Mus musculus GN=Rab3d PE=1 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.502e-50
Identity = 93/199 (46.73%), Postives = 135/199 (67.84%), Query Frame = 1
Query:  115 EPPQHLIAVMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDLKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRM------ASQPAMNNARP 693
            EPP       +  +DY+FKLLLIG+S VGK+  L R+ADDS+  +++ST+G+D K++TV +  K +KLQIWDTAGQER+RTIT++YYRGA G +++YD+ +QESF  V+ W  +I  Y+ +N   +LVGNKCDL D++VV  E  +  AD++G  F E SAK+++NV+Q F  +   I ++M      +S P  N   P
Sbjct:    6 EPPASPRDAADQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFTAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDIICDKMNESLEPSSSPGSNGKGP 204          
BLAST of CK932929 vs. ExPASy Swiss-Prot
Match: RAB26_MOUSE (Ras-related protein Rab-26 OS=Mus musculus GN=Rab26 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.502e-50
Identity = 95/204 (46.57%), Postives = 141/204 (69.12%), Query Frame = 1
Query:   76 PGPISSWTGSILREPPQHL---IAVMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYL-DSYISTIGVDLKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPA 675
            PGP +   G     PPQ +   +      YD  FK++L+GDSGVGK+CLL+RF D ++L  ++IST+G+D + + ++ DG  VKLQIWDTAGQERFR++T +YYR AH ++++YD+T+++SF+N++ WL EI  YA ++V  +L+GNK D T  +VV  E  +  A E G+PFMETSA+  +NV+ AF A+  ++K R A  P+
Sbjct:   40 PGPEAPPNG-----PPQSIRPSLGSTGDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDNIQAWLTEIQEYAQQDVVLMLLGNKVDSTQDRVVKREDGEKLAKEYGLPFMETSARTGLNVDLAFTAIAKELKQRSAKAPS 238          
BLAST of CK932929 vs. ExPASy Swiss-Prot
Match: RAB3_CAEEL (Ras-related protein Rab-3 OS=Caenorhabditis elegans GN=rab-3 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.186e-50
Identity = 87/170 (51.18%), Postives = 130/170 (76.47%), Query Frame = 1
Query:  154 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDLKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMA 663
            +DY+FKLL+IG+S VGK+  L R+ DDS+  +++ST+G+D K++TV +  K VKLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN+V+ W  +I  Y+ EN   +LVGNKCD+  ++VVS +  +  AD++G+ F ETSAK+++NV+  F  +   I ++MA
Sbjct:   19 FDYMFKLLIIGNSSVGKTSFLFRYCDDSFTSAFVSTVGIDFKVKTVFRGDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWCTQIKTYSWENAQVVLVGNKCDMDSERVVSMDRGRQLADQLGLEFFETSAKENINVKAVFEKLVEIICDKMA 188          
BLAST of CK932929 vs. ExPASy Swiss-Prot
Match: RAB26_RAT (Ras-related protein Rab-26 OS=Rattus norvegicus GN=Rab26 PE=2 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 9.385e-50
Identity = 88/175 (50.29%), Postives = 131/175 (74.86%), Query Frame = 1
Query:  154 YDYLFKLLLIGDSGVGKSCLLLRFADDSYL-DSYISTIGVDLKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPA 675
            YD  FK++L+GDSGVGK+CLL+RF D ++L  ++IST+G+D + + ++ DG  VKLQIWDTAGQERFR++T +YYR AH ++++YD+T+++SF+N++ WL EI  YA ++V  +L+GNK D T ++VV  E  +  A E G+PFMETSAK  +NV+ AF A+  ++K R    P+
Sbjct:   61 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDNIQAWLTEIQEYAQQDVVLMLLGNKVDSTQERVVKREDGEKLAKEYGLPFMETSAKSGLNVDLAFTAIAKELKQRSTKAPS 235          
BLAST of CK932929 vs. ExPASy Swiss-Prot
Match: RAB3D_RAT (GTP-binding protein Rab-3D OS=Rattus norvegicus GN=Rab3d PE=1 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 1.226e-49
Identity = 93/199 (46.73%), Postives = 135/199 (67.84%), Query Frame = 1
Query:  115 EPPQHLIAVMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDLKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRM------ASQPAMNNARP 693
            EPP       +  +DY+FKLLLIG+S VGK+  L R+ADDS+  +++ST+G+D K++TV +  K +KLQIWDTAGQER+RTIT++YYRGA G +++YD+ +QESF  V+ W  +I  Y+ +N   +LVGNKCDL D++VVS E  +  A ++G  F E SAK+++NV+Q F  +   I ++M      +S P  N   P
Sbjct:    6 EPPASPRDAADQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFTAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVSAEDGQRLAGDLGFEFFEASAKENINVKQVFERLVDIICDKMNESLEPSSSPGSNGKGP 204          
BLAST of CK932929 vs. ExPASy Swiss-Prot
Match: RABF1_DICDI (Ras-related protein RabF1 OS=Dictyostelium discoideum GN=rabF1-1 PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.731e-49
Identity = 94/173 (54.34%), Postives = 132/173 (76.30%), Query Frame = 1
Query:  142 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDLKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRM 660
            M+ EY++LFK +L GDSGVGK+ +L R  DD++ +++I TIG++ KI+TV  +GK +KLQIWDTAG++RFR + +S+YRG HG+IIVYDVTDQ SF NV  W+ +I RYA+ENV K+++GNK DL  +KVV    A+ FAD + IPF E SAK S+N+E+AF+++     NR+
Sbjct:    1 MSKEYEHLFKFVLAGDSGVGKTSILFRITDDTFTETHI-TIGIEFKIKTVYIEGKPIKLQIWDTAGEKRFR-VHNSHYRGCHGVIIVYDVTDQRSFENVPSWIEDIRRYANENVIKIIIGNKNDLVSQKVVDPFLAQEFADSLDIPFKEISAKQSINIEEAFISLVKLCINRI 171          
The following BLAST results are available for this feature:
BLAST of CK932929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB3C_BOVIN3.225e-5048.39Ras-related protein Rab-3C OS=Bos taurus GN=RAB3C ... [more]
RAB3C_RAT4.213e-5048.39Ras-related protein Rab-3C OS=Rattus norvegicus GN... [more]
RAB3C_MOUSE4.213e-5048.39Ras-related protein Rab-3C OS=Mus musculus GN=Rab3... [more]
SEC4_CANAL5.502e-5053.57Ras-related protein SEC4 OS=Candida albicans GN=SE... [more]
RAB3D_MOUSE5.502e-5046.73Ras-related protein Rab-3D OS=Mus musculus GN=Rab3... [more]
RAB26_MOUSE5.502e-5046.57Ras-related protein Rab-26 OS=Mus musculus GN=Rab2... [more]
RAB3_CAEEL7.186e-5051.18Ras-related protein Rab-3 OS=Caenorhabditis elegan... [more]
RAB26_RAT9.385e-5050.29Ras-related protein Rab-26 OS=Rattus norvegicus GN... [more]
RAB3D_RAT1.226e-4946.73GTP-binding protein Rab-3D OS=Rattus norvegicus GN... [more]
RABF1_DICDI2.731e-4954.34Ras-related protein RabF1 OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004349_H06 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932929 ID=CK932929; Name=CK932929; organism=Citrus sinensis; type=EST; length=705bp
GGGGATCATCGACATCTTTCTTTCTTCGTCAAATTCTCTCTCAATCTCAC
CTCCTTAGCTTGTCTGTGCCAAACTCCCGGTCCAATCTCCAGCTGGACCG
GTTCGATTCTGCGCGAACCCCCTCAACATCTTATTGCAGTCATGAATCCT
GAATATGACTACTTGTTCAAGCTTTTGCTGATTGGAGACTCTGGAGTCGG
CAAATCGTGTCTTCTTCTGAGATTTGCTGATGATTCGTACCTGGACAGTT
ACATTAGCACTATTGGGGTTGACCTTAAAATTCGCACAGTGGAGCAAGAC
GGGAAGACTGTAAAACTCCAAATTTGGGACACTGCAGGGCAAGAACGATT
CAGGACAATCACTAGCAGCTACTACCGTGGAGCACATGGCATTATCATTG
TTTATGATGTTACAGACCAAGAGAGCTTCAACAACGTTAAGCAGTGGTTG
AATGAAATTGATCGCTATGCAAGTGAAAATGTAAACAAGCTTCTGGTTGG
AAACAAGTGTGATCTCACTGATAAGAAGGTTGTCTCTTATGAAACAGCGA
AGGCATTTGCTGATGAAATTGGCATCCCGTTCATGGAGACCAGCGCAAAG
GATTCTATGAACGTGGAACAAGCTTTTATGGCTATGACTGCTGACATTAA
GAACAGGATGGCAAGTCAACCTGCAATGAACAATGCAAGGCCACCAACTA
TGCAG
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