CK932937

Overview
NameCK932937
Unique NameCK932937
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length452
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK932937 vs. ExPASy Swiss-Prot
Match: XTH30_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 30 OS=Arabidopsis thaliana GN=XTH30 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 4.918e-12
Identity = 46/125 (36.80%), Postives = 65/125 (52.00%), Query Frame = 1 
Query:  109 LFVGLLMVVLVSSAKFDDLYQTSWAFDHVQYDGD----------TLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDG---PNHNEFYFEFLGNTTGEPYLVQTNVYVNG 444
            +F+ +L + L SS+ F +L   S+        GD          +++L LD Y+G+GF S + Y  G  S  IKL    +AG V AFY S+       H+E   EFLGN  G+P+  QTN+Y NG
Sbjct:    9 IFILILCLCLRSSSAFTNLNTLSFEESLSPLFGDANLVRSPDDLSVRLLLDRYTGSGFISSNMYQHGFYSSMIKLPADYTAGVVVAFYTSNGDVFEKTHDELDIEFLGNIKGKPWRFQTNLYGNG 133
The following BLAST results are available for this feature:
BLAST of CK932937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
XTH30_ARATH4.918e-1236.80Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004349_G05 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932937 ID=CK932937; Name=CK932937; organism=Citrus sinensis; type=EST; length=452bp
CTTCAACTTCCCTCCACTTCACTGGGCTTGCTCTGCTCATTCGCTTACTT
CCTCTCCCCGTTCTTCTGTCTTCATTCTTCAATGGCTAAAATGTCTTTGA
TTTTCAGTCTGTTTGTGGGTCTTTTAATGGTGGTTTTGGTCAGCTCAGCT
AAGTTTGATGATCTTTATCAAACAAGCTGGGCTTTTGATCATGTTCAGTA
TGATGGGGACACTCTCAAGCTTAACCTCGATAATTATTCCGGAGCTGGGT
TTGCGTCAAAGAGCAAGTATTTGTTTGGGAAAGTCTCCATCCAAATTAAA
CTTGTAGGGGGTGACTCTGCTGGAACTGTCACTGCCTTCTATATGTCATC
AGACGGTCCAAATCACAACGAGTTCTATTTTGAGTTCCTGGGGAACACTA
CAGGAGAGCCATACTTAGTCCAAACCAATGTTTATGTGAATGGTGTGGGC
AA
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