CK932941

Overview
NameCK932941
Unique NameCK932941
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length633
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK932941 vs. ExPASy Swiss-Prot
Match: IF5A_METS5 (Translation initiation factor 5A OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=eIF5A PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.927e-11
Identity = 35/104 (33.65%), Postives = 59/104 (56.73%), Query Frame = 2 
Query:  104 GTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLARLK 415
            G +++  YIVI   PC+VVEV+ +KTGKHG AK + + + IF G K   + P     + P + +   Q+I    D    +  ET  T  ++ +PT+E++ +++K
Sbjct:    9 GEMKEGSYIVIDGEPCRVVEVTKAKTGKHGSAKANIIAVSIFTGAKKTLMAPVDSTVEVPIIEKRMGQVISNVGDKVQIMDLETYET-FEIDMPTEEDVASKIK 111
The following BLAST results are available for this feature:
BLAST of CK932941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
IF5A_METS56.927e-1133.65Translation initiation factor 5A OS=Metallosphaera... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004349_E10 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932941 ID=CK932941; Name=CK932941; organism=Citrus sinensis; type=EST; length=633bp
GGGGGAGGACAAGACCTTTNNAGAAAAAACTNNNTCGGACGAGGAGCACC
ACTTCGAATCGAAGGCTGATGCCGGTGCATCGAAGACTTTCCCTCAGCAA
GCTGGAACCATCCGCAAGAATGGTTATATTGTCATCAAAAATCGTCCTTG
CAAGGTTGTTGAAGTTTCCACTTCAAAGACTGGCAAGCATGGACATGCCA
AGTGCCACTTTGTGGGAATTGATATATTTAATGGAAAGAAGCTTGAAGAT
ATTGTGCCTTCCTCCCACAATTGTGATGCTCCCCATGTTACTCGCACTGA
CTATCAGCTGATTGATATATCCGAAGATGGTTTTGTGAGCCTTTTAACTG
AAACCGGAAACACCAAGGATGATCTGAGGCTTCCTACCGATGAAAATCTC
TTAGCCAGATTAAAGATGGGTTTGCTGAAGGAAAAGACCTTGTGGTGACC
GTTATGTCGTCAATGGGAGAGGAGCAGATCTGTGCCCTTAAGGACATTGG
TCCTAAGAATTAACTATAATCCCATGGCATTAGCTTTGGCTGATAGCAGG
AGAACTCTTTCTTATGTTGCCAACATGGAGACTATCTACTATCCATGTCC
ACAACAAACTTCCATTAAGATAGTATTTTGGGC
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