CK932950

Overview
NameCK932950
Unique NameCK932950
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK932950_ssr80 microsatellite CK932950_ssr80:80..97. BLAST: Citrus ESTs to Prunus persica proteins V1
CK932950_ssr70 microsatellite CK932950_ssr70:70..81. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10798 contig Csv1_Contig10798:1..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932950 vs. ExPASy Swiss-Prot
Match: PAL1_PRUAV (Phenylalanine ammonia-lyase 1 OS=Prunus avium GN=PAL1 PE=2 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 2.166e-70
Identity = 140/190 (73.68%), Postives = 154/190 (81.05%), Query Frame = 1
Query:  151 MERGATTENGHQNGGLE--GLCKNDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIAT--SSTNVELSESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAI 708
            M   +  +NGH+NG +E   LC          D LNWGV AETLKGSHL+EVKRMVAEYRKPVV LGGE+LT++QVAAIAT  S   VELSESAR GVKASS+WVM+SM+KGTDSYGVTTGFGATSHRRTK G ALQKELIRFLNAG+FG+  ES HTLPH  TRAAMLVR+NTLLQGYSGIRFEILE I
Sbjct:    1 MATNSIKQNGHKNGSVELPELCIKK-------DPLNWGVAAETLKGSHLDEVKRMVAEYRKPVVKLGGESLTISQVAAIATHDSGVKVELSESARAGVKASSDWVMDSMSKGTDSYGVTTGFGATSHRRTKQGAALQKELIRFLNAGVFGSTKESGHTLPHQATRAAMLVRINTLLQGYSGIRFEILEVI 183          
BLAST of CK932950 vs. ExPASy Swiss-Prot
Match: PAL2_LITER (Phenylalanine ammonia-lyase 2 OS=Lithospermum erythrorhizon PE=2 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 2.829e-70
Identity = 133/167 (79.64%), Postives = 147/167 (88.02%), Query Frame = 1
Query:  214 NDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIAT--SSTNVELSESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAI 708
            N    +   D LNWG+ AE++KGSHL+EVK+MVAE+RKPVV L G+TLT+AQVAAIA       VEL+E+AREGVKASS+WVMESMNKGTDSYGVTTGFGATSHRRTK GGALQKELIRFLNAGIFGNGTE+SHTLPHS TRAAMLVR+NTLLQGYSGIRFEILEAI
Sbjct:    5 NGKMEFCMKDPLNWGMAAESMKGSHLDEVKKMVAEFRKPVVQLAGKTLTIAQVAAIAARDDGVTVELAEAAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTETSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAI 171          
BLAST of CK932950 vs. ExPASy Swiss-Prot
Match: PAL1_DAUCA (Phenylalanine ammonia-lyase 1 OS=Daucus carota GN=PAL1 PE=3 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 4.826e-70
Identity = 135/172 (78.49%), Postives = 148/172 (86.05%), Query Frame = 1
Query:  208 CKNDNYNYSSG-----DALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAI 708
            C+N N    +G     D LNWG+ AE L GSHL+EVKRMVAE+RKP+V LGGETLTV+QVAAIA  S  VEL+ESAR GVKASS+WVMESMNKGTDSYGVTTGFGATSHRRTK GGALQKELIRFLNAGIFG+G +SS+ LPHS TRAAMLVR+NTLLQGYSGIRFEILEAI
Sbjct:    3 CENKNVVLGNGLCMQKDPLNWGMAAEALTGSHLDEVKRMVAEFRKPMVQLGGETLTVSQVAAIAAGSVKVELAESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGSGNDSSNILPHSATRAAMLVRINTLLQGYSGIRFEILEAI 174          
BLAST of CK932950 vs. ExPASy Swiss-Prot
Match: PAL1_ARATH (Phenylalanine ammonia-lyase 1 OS=Arabidopsis thaliana GN=PAL1 PE=1 SV=3)

HSP 1 Score: 262.307 bits (669), Expect = 1.834e-69
Identity = 141/190 (74.21%), Postives = 157/190 (82.63%), Query Frame = 1
Query:  160 GATTENGHQNGGLEG-LCKND----NYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIAT--SSTNVELSESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAI 708
            GA   NG   GG++  LC  D    N   ++ D LNWG  AE +KGSHL+EVKRMVAE+RKPVVNLGGETLT+ QVAAI+T  +S  VELSE+AR GV ASS+WVMESMNKGTDSYGVTTGFGATSHRRTKNG ALQKELIRFLNAGIFG+  E+SHTLPHS TRAAMLVR+NTLLQG+SGIRFEILEAI
Sbjct:    5 GAHKSNG---GGVDAMLCGGDIKTKNMVINAEDPLNWGAAAEQMKGSHLDEVKRMVAEFRKPVVNLGGETLTIGQVAAISTIGNSVKVELSETARAGVNASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGVALQKELIRFLNAGIFGSTKETSHTLPHSATRAAMLVRINTLLQGFSGIRFEILEAI 191          
BLAST of CK932950 vs. ExPASy Swiss-Prot
Match: PALY_DIGLA (Phenylalanine ammonia-lyase OS=Digitalis lanata PE=2 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 3.128e-69
Identity = 138/184 (75.00%), Postives = 148/184 (80.43%), Query Frame = 1
Query:  163 ATTENGHQNGGLEGLCKNDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATSSTNV--ELSESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAI 708
            A  ENGH   G  G C   N      D LNW   AE LKGSHL+EVKRMV E+RK VV LGGETLT++QVAAIA     V  +L+ES+R GVKASS+WVMESMNKGTDSYGVTTGFGATSHRRTK GGALQKELIRFLNAGIFGNGTES+HTLPHS TRAAMLVR+NTLLQGYSGIRFEILE I
Sbjct:    3 AVVENGHH--GNNGFCVKQN------DPLNWVAAAEELKGSHLDEVKRMVEEFRKTVVKLGGETLTISQVAAIAARDNEVAVQLAESSRAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESTHTLPHSATRAAMLVRINTLLQGYSGIRFEILETI 178          
BLAST of CK932950 vs. ExPASy Swiss-Prot
Match: PAL3_PETCR (Phenylalanine ammonia-lyase 3 OS=Petroselinum crispum GN=PAL3 PE=2 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 2.648e-68
Identity = 138/184 (75.00%), Postives = 149/184 (80.98%), Query Frame = 1
Query:  169 TENGHQNGGLEGLCKNDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIAT---SSTNVELSESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTES-SHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAI 708
            T NGH NG    LC          D LNWGV AE L GSHL+EVKRMVAEYRKPVV L GETLT++QVAAI+    S   VELSE AR GVKASS+WVM+SMNKGTDSYGVTTGFGATSHRRTK GGALQKELIRFLNAGIFG+G E+ ++TLPHS TRAAMLVR+NTLLQGYSGIRFEILEAI
Sbjct:    7 TTNGHANGNGLDLCMKKE------DPLNWGVAAEALTGSHLDEVKRMVAEYRKPVVKLEGETLTISQVAAISARDDSGVKVELSEEARAGVKASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGSGAEAGNNTLPHSATRAAMLVRINTLLQGYSGIRFEILEAI 184          
BLAST of CK932950 vs. ExPASy Swiss-Prot
Match: PAL1_SOLTU (Phenylalanine ammonia-lyase 1 OS=Solanum tuberosum GN=PAL-1 PE=3 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 3.458e-68
Identity = 134/184 (72.83%), Postives = 154/184 (83.70%), Query Frame = 1
Query:  172 ENGHQNGGLEGLCKNDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIA-----TSSTNVELSESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAI 708
            +NGH NG +E +     +  S  D LNW +  ++L+GSHL+EVK+MV E+RKP+V L GETLTVAQVA+IA     TS   VELSESAR GVKASS+WVM+SM+KGTDSYGVTTGF ATSHRRTKNGGALQKELI+FLNAG+FGNGTES+HTLPHS TRAAMLVR+NTLLQGYSGIRFEILEAI
Sbjct:    7 QNGHVNGEVEEVL----WKKSIHDPLNWEMAVDSLRGSHLDEVKKMVDEFRKPIVKLWGETLTVAQVASIANADNKTSGFKVELSESARAGVKASSDWVMDSMSKGTDSYGVTTGFCATSHRRTKNGGALQKELIKFLNAGVFGNGTESTHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAI 186          
BLAST of CK932950 vs. ExPASy Swiss-Prot
Match: PAL2_CICAR (Phenylalanine ammonia-lyase 2 OS=Cicer arietinum GN=PAL2 PE=2 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 4.517e-68
Identity = 130/180 (72.22%), Postives = 153/180 (85.00%), Query Frame = 1
Query:  175 NGHQNGGLEGLCKNDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATSSTNV--ELSESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAI 708
            NG+ NG    +C N N N S+ D+LNWG+ A++++GSHL+EVKRMV EYRK VV LGG+ LT++QVAA+AT +T V  EL+E  R  VKASS+WV++SMNKGTDSYGVTTGFGATSHRRTK GGALQ ELIRFLNAGIFGNGTES+ TLPH+ TRAAMLVR+NTLLQGYSGIRFEI+EAI
Sbjct:    6 NGNCNGSSLNVC-NGNGNLSNNDSLNWGMAADSMRGSHLDEVKRMVEEYRKAVVPLGGKGLTISQVAAVATQNTGVAVELAEETRYAVKASSDWVVDSMNKGTDSYGVTTGFGATSHRRTKQGGALQNELIRFLNAGIFGNGTESTQTLPHTATRAAMLVRINTLLQGYSGIRFEIMEAI 184          
BLAST of CK932950 vs. ExPASy Swiss-Prot
Match: PAL3_TOBAC (Phenylalanine ammonia-lyase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 7.704e-68
Identity = 131/160 (81.88%), Postives = 143/160 (89.38%), Query Frame = 1
Query:  241 DALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATS----STNVELSESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAI 708
            D LNW + A++LKGSHL+EVK+MVAE+RKPVV LGGETLTVAQVAAIA      +  VELSE AR GVKASS+WVM+SM+KGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAG+FGNGTES HTLP S TRAAMLVR+NTLLQGYSGIRFEILEAI
Sbjct:   19 DPLNWEMAADSLKGSHLDEVKKMVAEFRKPVVKLGGETLTVAQVAAIAAKDNAKTVKVELSEGARAGVKASSDWVMDSMSKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGVFGNGTESCHTLPQSGTRAAMLVRINTLLQGYSGIRFEILEAI 178          
BLAST of CK932950 vs. ExPASy Swiss-Prot
Match: PAL1_PETCR (Phenylalanine ammonia-lyase 1 OS=Petroselinum crispum GN=PAL1 PE=1 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 7.704e-68
Identity = 138/186 (74.19%), Postives = 150/186 (80.65%), Query Frame = 1
Query:  160 GATTENGHQNGGLEGLCKNDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIAT---SSTNVELSESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAI 708
            GATT NGH NG     C          D L WG+ AE + GSHL+EVK+MVAEYRKPVV LGGETLT++QVAAI+    S   VELSE+AR GVKASS+WVM+SMNKGTDSYGVTTGFGATSHRRTK GGALQKELIRFLNAGIFGNG  S +TLPHS TRAAMLVR+NTLLQGYSGIRFEILEAI
Sbjct:    6 GATT-NGHVNGNGMDFCMKTE------DPLYWGIAAEAMTGSHLDEVKKMVAEYRKPVVKLGGETLTISQVAAISARDGSGVTVELSEAARAGVKASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNG--SDNTLPHSATRAAMLVRINTLLQGYSGIRFEILEAI 182          
The following BLAST results are available for this feature:
BLAST of CK932950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
PAL1_PRUAV2.166e-7073.68Phenylalanine ammonia-lyase 1 OS=Prunus avium GN=P... [more]
PAL2_LITER2.829e-7079.64Phenylalanine ammonia-lyase 2 OS=Lithospermum eryt... [more]
PAL1_DAUCA4.826e-7078.49Phenylalanine ammonia-lyase 1 OS=Daucus carota GN=... [more]
PAL1_ARATH1.834e-6974.21Phenylalanine ammonia-lyase 1 OS=Arabidopsis thali... [more]
PALY_DIGLA3.128e-6975.00Phenylalanine ammonia-lyase OS=Digitalis lanata PE... [more]
PAL3_PETCR2.648e-6875.00Phenylalanine ammonia-lyase 3 OS=Petroselinum cris... [more]
PAL1_SOLTU3.458e-6872.83Phenylalanine ammonia-lyase 1 OS=Solanum tuberosum... [more]
PAL2_CICAR4.517e-6872.22Phenylalanine ammonia-lyase 2 OS=Cicer arietinum G... [more]
PAL3_TOBAC7.704e-6881.88Phenylalanine ammonia-lyase OS=Nicotiana tabacum P... [more]
PAL1_PETCR7.704e-6874.19Phenylalanine ammonia-lyase 1 OS=Petroselinum cris... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004349_E01 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932950 ID=CK932950; Name=CK932950; organism=Citrus sinensis; type=EST; length=709bp
GCGGGGAGGAAATCCATTATTGTTATAGACTNNNGAATTTCCTTTAGCTC
ANNNNTTCTTCATCACTCCCATTCATTCATTCTTCTTCTTCTTCTTCTTT
CTACAGTTTTGGTATTTTTTGTAATTGCAGTAACATTTACGTAAAACGAT
ATGGAGAGAGGTGCCACTACTGAGAATGGTCACCAGAACGGTGGCCTGGA
GGGTTTGTGCAAGAATGACAATTACAATTACAGTTCTGGGGATGCGTTGA
ACTGGGGAGTGATGGCGGAGACGTTGAAGGGGAGCCATTTGGAGGAAGTG
AAGCGTATGGTGGCGGAGTACAGGAAGCCGGTGGTCAACCTCGGTGGTGA
GACGTTGACCGTAGCACAGGTGGCTGCCATTGCCACGTCCTCTACGAATG
TGGAGCTGTCGGAATCTGCCAGGGAAGGCGTCAAGGCCAGCAGTAATTGG
GTGATGGAGAGCATGAATAAGGGTACCGACAGTTACGGCGTTACCACTGG
CTTTGGCGCCACTTCTCATCGGAGAACCAAGAACGGCGGTGCTCTTCAGA
AGGAGCTCATTAGATTTTTGAACGCTGGAATCTTTGGAAACGGAACAGAG
TCATCTCACACGCTACCTCACTCAACAACAAGGGCAGCCATGCTTGTGAG
GGTTAACACTCTTCTCCAGGGCTACTCTGGCATCCGATTTGAAATCCTGG
AAGCGATCA
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