CK932950

Overview
NameCK932950
Unique NameCK932950
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK932950_ssr80 microsatellite CK932950_ssr80:80..97. BLAST: Citrus ESTs to Prunus persica proteins V1
CK932950_ssr70 microsatellite CK932950_ssr70:70..81. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10798 contig Csv1_Contig10798:1..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932950 vs. ExPASy Swiss-Prot
Match: PAL1_LITER (Phenylalanine ammonia-lyase 1 OS=Lithospermum erythrorhizon PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 7.704e-68
Identity = 131/176 (74.43%), Postives = 149/176 (84.66%), Query Frame = 1
Query:  196 LEGLCKNDN---YNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIAT--SSTNVELSESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAI 708
            +E + +N N     +   D LNW + +E++KGSHL+EVK MVAE+RKPVV L G+TLT+ QVAAIA       VEL+E+AREGVKASS+WVM+SMNKGTDSYGVTTGFGATSHRRTK GGALQKELIRFLNAGIFGNGTE+SHTLPHS TRAAMLVR+NTLLQGYSGIRFEILEAI
Sbjct:    1 METIVENGNGKTMEFCMKDPLNWEMASESMKGSHLDEVKNMVAEFRKPVVQLAGKTLTIGQVAAIAARDDGVTVELAEAAREGVKASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTETSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAI 176          
BLAST of CK932950 vs. ExPASy Swiss-Prot
Match: PAL1_IPOBA (Phenylalanine ammonia-lyase OS=Ipomoea batatas GN=PAL PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 7.704e-68
Identity = 131/158 (82.91%), Postives = 142/158 (89.87%), Query Frame = 1
Query:  241 DALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIAT--SSTNVELSESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAI 708
            D LNW + AE+L+GSHL+EVKRMVAE+RKP V LGGETLTVAQVA IA+  ++  VELSE AR GVKASS+WVM+SMNKGTDSYGVTTGFGATSHRRTK GGALQKELIRFLNAGIFGN TES HTLPHS TRAAMLVR+NTLLQGYSGIRFEILEAI
Sbjct:   15 DPLNWEMAAESLRGSHLDEVKRMVAEFRKPAVKLGGETLTVAQVARIASRDNAVAVELSEEARAGVKASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNATESCHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAI 172          
BLAST of CK932950 vs. ExPASy Swiss-Prot
Match: PALY_CITLI (Phenylalanine ammonia-lyase OS=Citrus limon GN=PAL6 PE=2 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 1.006e-67
Identity = 139/193 (72.02%), Postives = 153/193 (79.27%), Query Frame = 1
Query:  151 MERGATTENG---HQNGGLE--GLCKNDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIAT--SSTNVELSESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAI 708
            ME    T NG    +NGG    GLC       +  D LNW V A++LKGSHL+EVKRM+ EYR+PVV LGGE+LT+ QV AIA   S   VEL+E+AR GVKASS+WVM+SM KGTDSYGVTTGFGATSHRRTK GGALQKELIRFLN+GIFGNGTESSHTLPHS TRAAMLVRVNTLLQGYSGIRFEILE I
Sbjct:    1 MELSHETCNGIKNDRNGGTSSLGLC-------TGTDPLNWTVAADSLKGSHLDEVKRMIDEYRRPVVKLGGESLTIGQVTAIAAHDSGVKVELAEAARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETI 186          
BLAST of CK932950 vs. ExPASy Swiss-Prot
Match: PAL2_TOBAC (Phenylalanine ammonia-lyase OS=Nicotiana tabacum GN=PALA PE=2 SV=2)

HSP 1 Score: 256.529 bits (654), Expect = 1.006e-67
Identity = 131/160 (81.88%), Postives = 142/160 (88.75%), Query Frame = 1
Query:  241 DALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATS----STNVELSESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAI 708
            D LNW + A++LKGSHL+EVK+MVAE+RKPVV LGGETLTVAQVAAIA      +  VELSE AR GVKASS+WVM+SM KGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAG+FGNGTES HTLP S TRAAMLVR+NTLLQGYSGIRFEILEAI
Sbjct:   19 DPLNWEMAADSLKGSHLDEVKKMVAEFRKPVVKLGGETLTVAQVAAIAAKDNVKTVKVELSEGARAGVKASSDWVMDSMGKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGVFGNGTESCHTLPQSGTRAAMLVRINTLLQGYSGIRFEILEAI 178          
BLAST of CK932950 vs. ExPASy Swiss-Prot
Match: PAL2_POPKI (Phenylalanine ammonia-lyase G2B OS=Populus kitakamiensis GN=PALG2B PE=3 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.314e-67
Identity = 129/167 (77.25%), Postives = 143/167 (85.63%), Query Frame = 1
Query:  214 NDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATSSTNV--ELSESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAI 708
            N +  +++ D LNWG+ AE+LKGSHL+EVKRM+ EYR PVV LGGETLT+ QV AIA+    V  ELSE AR GVKASS+WVM+SM+KGTDSYGVTTGFGATSHRRTK GG LQKELIRFLNAGIFGNGTESSHTLP S TRAAMLVR NTLLQGYSGIRFE+LEAI
Sbjct:   11 NGSPGFNTNDPLNWGMAAESLKGSHLDEVKRMIEEYRNPVVKLGGETLTIGQVTAIASRDVGVMVELSEEARAGVKASSDWVMDSMSKGTDSYGVTTGFGATSHRRTKQGGELQKELIRFLNAGIFGNGTESSHTLPRSATRAAMLVRTNTLLQGYSGIRFEMLEAI 177          
BLAST of CK932950 vs. ExPASy Swiss-Prot
Match: PAL2_PETCR (Phenylalanine ammonia-lyase 2 OS=Petroselinum crispum GN=PAL2 PE=2 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 3.824e-67
Identity = 137/186 (73.66%), Postives = 149/186 (80.11%), Query Frame = 1
Query:  160 GATTENGHQNGGLEGLCKNDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIAT---SSTNVELSESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAI 708
            GA T NGH NG     C          D L WG+ AE + GSHL+EVK+MVAEYRKPVV LGGETLT++QVAAI+    S   VELSE+AR GVKASS+WVM+SMNKGTDSYGVTTGFGATSHRRTK GGALQKELIRFLNAGIFGNG  S +TLPHS TRAAMLVR+NTLLQGYSGIRFEILEAI
Sbjct:    6 GAIT-NGHVNGNGMDFCMKTE------DPLYWGIAAEAMTGSHLDEVKKMVAEYRKPVVKLGGETLTISQVAAISARDGSGVTVELSEAARAGVKASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNG--SDNTLPHSATRAAMLVRINTLLQGYSGIRFEILEAI 182          
BLAST of CK932950 vs. ExPASy Swiss-Prot
Match: PALY_STYHU (Phenylalanine ammonia-lyase OS=Stylosanthes humilis GN=PAL17.1 PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 6.522e-67
Identity = 129/178 (72.47%), Postives = 147/178 (82.58%), Query Frame = 1
Query:  181 HQNGGLEGLCKNDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATSS--TNVELSESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAI 708
            H N         +N      D LNW   AE LKGSHL+EVKRMV+EYRKP+VNLGG+TLT++QVAAIA +    +V+LSE++R GVKASS+WVM+SMN GTDSYGVTTGFGATSHRRTK GGALQKELIRFLNAGIFGNGTE++ TLPH+ TRAAMLVR+NTLLQGYSGIRFEILEAI
Sbjct:    4 HANADATFCLTANNGQQPRHDPLNWAAAAEALKGSHLDEVKRMVSEYRKPLVNLGGQTLTISQVAAIAANDQGVSVQLSEASRAGVKASSDWVMDSMNNGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTETNCTLPHTATRAAMLVRINTLLQGYSGIRFEILEAI 181          
BLAST of CK932950 vs. ExPASy Swiss-Prot
Match: PAL1_SOLLC (Phenylalanine ammonia-lyase OS=Solanum lycopersicum GN=PAL PE=2 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.453e-66
Identity = 130/173 (75.14%), Postives = 147/173 (84.97%), Query Frame = 1
Query:  205 LCKNDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIA-----TSSTNVELSESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAI 708
            LCK      S  D LNW + A++L+GSHL+EVK+MV E+RKP+V LGGETL+VAQVA+IA     ++   VELSESAR GVKASS+WVM+SM+KGTDSYGVT GFGATSHRRTKNGGALQKELIRFLNAG+FGNG ES HTLPHS TRAAMLVR+NTLLQGYSGIRFEILEAI
Sbjct:    3 LCKK-----SINDPLNWEMAADSLRGSHLDEVKKMVDEFRKPIVKLGGETLSVAQVASIANVDDKSNGVKVELSESARAGVKASSDWVMDSMSKGTDSYGVTAGFGATSHRRTKNGGALQKELIRFLNAGVFGNGIESFHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAI 170          
BLAST of CK932950 vs. ExPASy Swiss-Prot
Match: PAL2_SOLTU (Phenylalanine ammonia-lyase 2 (Fragment) OS=Solanum tuberosum GN=PAL-2 PE=3 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 2.478e-66
Identity = 132/188 (70.21%), Postives = 153/188 (81.38%), Query Frame = 1
Query:  172 ENGHQNGGLE----GLCKNDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIA-----TSSTNVELSESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAI 708
            +N H NG ++     LCK  NY       LNW + A++L+GS L++VK+MV E+RKP+V LGGETLTVAQVA+IA     ++   VELSESAR GVKASS+WVM+SM+KGTDSYGVTTGFGATSHRRTKNGG LQK LIRFLNAG+FG GTES+HTLPHS TRAAMLVR+NTLLQGYSGIRFEILEAI
Sbjct:    7 QNEHINGEVKEVLWNLCKKQNYL-----PLNWEMAADSLRGSKLDQVKKMVDEFRKPIVKLGGETLTVAQVASIANVDNKSNGVRVELSESARAGVKASSDWVMDSMSKGTDSYGVTTGFGATSHRRTKNGGTLQKNLIRFLNAGVFGIGTESTHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAI 189          
BLAST of CK932950 vs. ExPASy Swiss-Prot
Match: PAL2_ARATH (Phenylalanine ammonia-lyase 2 OS=Arabidopsis thaliana GN=PAL2 PE=1 SV=2)

HSP 1 Score: 250.751 bits (639), Expect = 5.521e-66
Identity = 127/158 (80.38%), Postives = 140/158 (88.61%), Query Frame = 1
Query:  241 DALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIAT--SSTNVELSESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAI 708
            D LNWG+ A+ +KGSHL+EVK+MV EYR+PVVNLGGETLT+ QVAAI+T   S  VEL+E++R GVKASS+WVMESMNKGTDSYGVTTGFGATSHRRTKNG ALQ ELIRFLNAGIFGN  E+ HTLP S TRAAMLVRVNTLLQGYSGIRFEILEAI
Sbjct:   26 DPLNWGLAADQMKGSHLDEVKKMVEEYRRPVVNLGGETLTIGQVAAISTVGGSVKVELAETSRAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGTALQTELIRFLNAGIFGNTKETCHTLPQSATRAAMLVRVNTLLQGYSGIRFEILEAI 183          
The following BLAST results are available for this feature:
BLAST of CK932950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
PAL1_LITER7.704e-6874.43Phenylalanine ammonia-lyase 1 OS=Lithospermum eryt... [more]
PAL1_IPOBA7.704e-6882.91Phenylalanine ammonia-lyase OS=Ipomoea batatas GN=... [more]
PALY_CITLI1.006e-6772.02Phenylalanine ammonia-lyase OS=Citrus limon GN=PAL... [more]
PAL2_TOBAC1.006e-6781.88Phenylalanine ammonia-lyase OS=Nicotiana tabacum G... [more]
PAL2_POPKI1.314e-6777.25Phenylalanine ammonia-lyase G2B OS=Populus kitakam... [more]
PAL2_PETCR3.824e-6773.66Phenylalanine ammonia-lyase 2 OS=Petroselinum cris... [more]
PALY_STYHU6.522e-6772.47Phenylalanine ammonia-lyase OS=Stylosanthes humili... [more]
PAL1_SOLLC1.453e-6675.14Phenylalanine ammonia-lyase OS=Solanum lycopersicu... [more]
PAL2_SOLTU2.478e-6670.21Phenylalanine ammonia-lyase 2 (Fragment) OS=Solanu... [more]
PAL2_ARATH5.521e-6680.38Phenylalanine ammonia-lyase 2 OS=Arabidopsis thali... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004349_E01 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932950 ID=CK932950; Name=CK932950; organism=Citrus sinensis; type=EST; length=709bp
GCGGGGAGGAAATCCATTATTGTTATAGACTNNNGAATTTCCTTTAGCTC
ANNNNTTCTTCATCACTCCCATTCATTCATTCTTCTTCTTCTTCTTCTTT
CTACAGTTTTGGTATTTTTTGTAATTGCAGTAACATTTACGTAAAACGAT
ATGGAGAGAGGTGCCACTACTGAGAATGGTCACCAGAACGGTGGCCTGGA
GGGTTTGTGCAAGAATGACAATTACAATTACAGTTCTGGGGATGCGTTGA
ACTGGGGAGTGATGGCGGAGACGTTGAAGGGGAGCCATTTGGAGGAAGTG
AAGCGTATGGTGGCGGAGTACAGGAAGCCGGTGGTCAACCTCGGTGGTGA
GACGTTGACCGTAGCACAGGTGGCTGCCATTGCCACGTCCTCTACGAATG
TGGAGCTGTCGGAATCTGCCAGGGAAGGCGTCAAGGCCAGCAGTAATTGG
GTGATGGAGAGCATGAATAAGGGTACCGACAGTTACGGCGTTACCACTGG
CTTTGGCGCCACTTCTCATCGGAGAACCAAGAACGGCGGTGCTCTTCAGA
AGGAGCTCATTAGATTTTTGAACGCTGGAATCTTTGGAAACGGAACAGAG
TCATCTCACACGCTACCTCACTCAACAACAAGGGCAGCCATGCTTGTGAG
GGTTAACACTCTTCTCCAGGGCTACTCTGGCATCCGATTTGAAATCCTGG
AAGCGATCA
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