CK932950

Overview
NameCK932950
Unique NameCK932950
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK932950_ssr80 microsatellite CK932950_ssr80:80..97. BLAST: Citrus ESTs to Prunus persica proteins V1
CK932950_ssr70 microsatellite CK932950_ssr70:70..81. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10798 contig Csv1_Contig10798:1..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932950 vs. ExPASy Swiss-Prot
Match: PAL2_PHAVU (Phenylalanine ammonia-lyase class 2 OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 9.418e-66
Identity = 128/161 (79.50%), Postives = 139/161 (86.34%), Query Frame = 1
Query:  232 SSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIAT--SSTNVELSESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAI 708
            ++GD LNW   AE L GSHL+EVKRMVAEYRKP V LGG+TLT+AQVAA A       VEL+ESAR  VKA S+WVMESM+KGTDSYG+TTGFGATSHRRTK GGALQKELIRFLNAGIFGNGTES+ TLPH+ TRAAMLVRVNTLLQGYSGIRFEILEAI
Sbjct:   18 AAGDPLNWAAAAEALSGSHLDEVKRMVAEYRKPAVRLGGQTLTIAQVAATAAHDQGLKVELAESARACVKAISDWVMESMDKGTDSYGITTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESNCTLPHTATRAAMLVRVNTLLQGYSGIRFEILEAI 178          
BLAST of CK932950 vs. ExPASy Swiss-Prot
Match: PAL1_RUBID (Phenylalanine ammonia-lyase 1 OS=Rubus idaeus GN=PAL1 PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.579e-65
Identity = 126/176 (71.59%), Postives = 144/176 (81.82%), Query Frame = 1
Query:  187 NGGLEGLCKNDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIAT--SSTNVELSESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAI 708
            NG +E  C+         D LNW + AE+LKGSH++E+KRMV++YRKPVV LGGETLT+ QVAAIA+      VELSE  R GVKASS+WVM+SM KGTDSYGVTTGFGATSHRRTKNGGALQ+ELIRFLNAGIFG+  +S+H LPH+ TRAAMLVR NTLLQGYSGIRFEILEAI
Sbjct:    8 NGAVESFCEGH-------DPLNWNMAAESLKGSHVDELKRMVSDYRKPVVKLGGETLTIGQVAAIASHDGGVRVELSEEKRAGVKASSDWVMDSMGKGTDSYGVTTGFGATSHRRTKNGGALQRELIRFLNAGIFGSSLDSTHKLPHTATRAAMLVRFNTLLQGYSGIRFEILEAI 176          
BLAST of CK932950 vs. ExPASy Swiss-Prot
Match: PAL4_ARATH (Phenylalanine ammonia-lyase 4 OS=Arabidopsis thaliana GN=PAL4 PE=1 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.776e-64
Identity = 130/172 (75.58%), Postives = 141/172 (81.98%), Query Frame = 1
Query:  205 LCKNDNYNYS-SGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATSS--TNVELSESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGT-ESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAI 708
            LC  +N+  + SGD LNW   AE LKGSHL+EVKRMV EYRK  V LGGETLT+ QVAA+A     + VEL+E AR GVKASS WVMESMN+GTDSYGVTTGFGATSHRRTK GGALQ ELIRFLNAGIFG G  ++SHTLP  TTRAAMLVRVNTLLQGYSGIRFEILEAI
Sbjct:    3 LCNQNNHITAVSGDPLNWNATAEALKGSHLDEVKRMVKEYRKEAVKLGGETLTIGQVAAVARGGGGSTVELAEEARAGVKASSEWVMESMNRGTDSYGVTTGFGATSHRRTKQGGALQNELIRFLNAGIFGPGAGDTSHTLPKPTTRAAMLVRVNTLLQGYSGIRFEILEAI 174          
BLAST of CK932950 vs. ExPASy Swiss-Prot
Match: PAL2_ORYSJ (Phenylalanine ammonia-lyase OS=Oryza sativa subsp. japonica GN=ZB8 PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.456e-58
Identity = 122/181 (67.40%), Postives = 137/181 (75.69%), Query Frame = 1
Query:  172 ENGHQNG-GLEGLCKNDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATSS-TNVELSESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAI 708
            ENG  +  G+ GLC          D LNWG   E + GSHL+EVKRMVAEYR+P+V + G +L +AQVAA+A +    VEL ESARE VKASS+WVM SM  GTDSYGVTTGFGATSHRRTK GGALQ+ELIRFLNAG FG GT+  H LP   TRAAMLVR+NTLLQGYSGIRFEILEAI
Sbjct:    4 ENGRVSANGMSGLC----VAAPRADPLNWGKATEEMTGSHLDEVKRMVAEYRQPLVKIEGASLRIAQVAAVAAAGEARVELDESARERVKASSDWVMNSMMNGTDSYGVTTGFGATSHRRTKEGGALQRELIRFLNAGAFGTGTD-GHVLPAEATRAAMLVRINTLLQGYSGIRFEILEAI 179          
BLAST of CK932950 vs. ExPASy Swiss-Prot
Match: PAL2_ORYSI (Phenylalanine ammonia-lyase OS=Oryza sativa subsp. indica GN=ZB8 PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.456e-58
Identity = 122/181 (67.40%), Postives = 137/181 (75.69%), Query Frame = 1
Query:  172 ENGHQNG-GLEGLCKNDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATSS-TNVELSESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAI 708
            ENG  +  G+ GLC          D LNWG   E + GSHL+EVKRMVAEYR+P+V + G +L +AQVAA+A +    VEL ESARE VKASS+WVM SM  GTDSYGVTTGFGATSHRRTK GGALQ+ELIRFLNAG FG GT+  H LP   TRAAMLVR+NTLLQGYSGIRFEILEAI
Sbjct:    4 ENGRVSANGMSGLC----VAAPRADPLNWGKATEEMTGSHLDEVKRMVAEYRQPLVKIEGASLRIAQVAAVAAAGEARVELDESARERVKASSDWVMNSMMNGTDSYGVTTGFGATSHRRTKEGGALQRELIRFLNAGAFGTGTD-GHVLPAEATRAAMLVRINTLLQGYSGIRFEILEAI 179          
BLAST of CK932950 vs. ExPASy Swiss-Prot
Match: PAL3_ARATH (Phenylalanine ammonia-lyase 3 OS=Arabidopsis thaliana GN=PAL3 PE=1 SV=3)

HSP 1 Score: 225.713 bits (574), Expect = 1.902e-58
Identity = 115/159 (72.33%), Postives = 129/159 (81.13%), Query Frame = 1
Query:  241 DALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTES---SHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAI 708
            D LNW V AE LKGSHLEEVK+MV +YRK  V LGGETLT+ QVAA+A+    VELSE AR GVKASS+WVMESMN+ TD+YG+TTGFG++S RRT  G ALQKELIR+LNAGIF  G E    S+TLP   TRAAML+RVNTLLQGYSGIRFEILEAI
Sbjct:   13 DPLNWNVAAEALKGSHLEEVKKMVKDYRKGTVQLGGETLTIGQVAAVASGGPTVELSEEARGGVKASSDWVMESMNRDTDTYGITTGFGSSSRRRTDQGAALQKELIRYLNAGIFATGNEDDDRSNTLPRPATRAAMLIRVNTLLQGYSGIRFEILEAI 171          
BLAST of CK932950 vs. ExPASy Swiss-Prot
Match: PALY_BROFI (Phenylalanine ammonia-lyase OS=Bromheadia finlaysoniana GN=PAL PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.685e-57
Identity = 114/158 (72.15%), Postives = 136/158 (86.08%), Query Frame = 1
Query:  241 DALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATS--STNVELSESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAI 708
            D LNWG  A  L+GSHL+EVK+MV E+R+PVV L G  L ++QVAA+A    ++ VEL+ESAR GVKASS+WV+ES++KGTDSYGVTTGFGATSHRRTK GGALQKELI+FLNAGIFG+G  +S+TLP + TRAAMLVR+NTLLQGYSGIRFEIL+AI
Sbjct:   15 DPLNWGAAAAELQGSHLDEVKKMVEEFRRPVVKLEGVKLKISQVAAVAFGGGASAVELAESARAGVKASSDWVLESVDKGTDSYGVTTGFGATSHRRTKQGGALQKELIKFLNAGIFGSG--NSNTLPSAATRAAMLVRINTLLQGYSGIRFEILKAI 170          
BLAST of CK932950 vs. ExPASy Swiss-Prot
Match: PALY_WHEAT (Phenylalanine ammonia-lyase OS=Triticum aestivum GN=PAL PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.363e-56
Identity = 119/160 (74.38%), Postives = 126/160 (78.75%), Query Frame = 1
Query:  232 SSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATSS-TNVELSESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAI 708
            S  D LNWG  AE L GSHLE VKRMV EYRKPVV + G T T+A VAA+A  S T VEL ESAR  VK SS+WVM SM  GTDSYGVTTGFGATSHRRTK GGALQ+ELIRFLNAG FG GT+  H LP + TRAAMLVRVNTLLQGYSGIRFEILE I
Sbjct:    9 SRADPLNWGKAAEELSGSHLEAVKRMVEEYRKPVVTMEGAT-TIAMVAAVAAGSDTRVELDESARGRVKESSDWVMNSMMNGTDSYGVTTGFGATSHRRTKEGGALQRELIRFLNAGAFGTGTD-GHVLPAAATRAAMLVRVNTLLQGYSGIRFEILETI 166          
BLAST of CK932950 vs. ExPASy Swiss-Prot
Match: PAL2_IPOBA (Phenylalanine ammonia-lyase OS=Ipomoea batatas PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 4.385e-55
Identity = 110/157 (70.06%), Postives = 125/157 (79.62%), Query Frame = 1
Query:  241 DALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATSSTNVELSESAREGVK-ASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAI 708
            D LNW + A++LKGSHL+EVKRMVAE+R P V +GG+TLT  +   IA      + S       + +SS+WVM SMN GTDSYGVTTGFGATSHRRTKNG ALQ+ELIRFLNAGIFG GT +SHTLPHS TRAAMLVR+NTLLQGYSGIRFEILEAI
Sbjct:   18 DPLNWEMAADSLKGSHLDEVKRMVAEFRNPAVKIGGQTLTSLRSPPIAARDNASKWSSPRLPARRESSSDWVMNSMNNGTDSYGVTTGFGATSHRRTKNGHALQQELIRFLNAGIFGTGTGASHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAI 174          
BLAST of CK932950 vs. ExPASy Swiss-Prot
Match: PAL1_POPKI (Phenylalanine ammonia-lyase G1 OS=Populus kitakamiensis GN=PALG1 PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.712e-54
Identity = 110/150 (73.33%), Postives = 123/150 (82.00%), Query Frame = 1
Query:  265 AETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATSSTNV--ELSESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAI 708
            A++LKGSHL+EVKRM+ EYR PVV LGGETLT+ QV AIA+    V  ELSE AR GVKAS++WVM+S N    S+ VT GFGATSHR+TK GG LQKELIRFLN GIFGNGTES+H LP S TRAAMLVR NTLLQGYSGIRFE+LEAI
Sbjct:    3 ADSLKGSHLDEVKRMIEEYRNPVVKLGGETLTIGQVTAIASGHVGVMVELSEEARAGVKASNDWVMDSKN----SHAVTAGFGATSHRKTKQGGELQKELIRFLNVGIFGNGTESNHILPRSATRAAMLVRTNTLLQGYSGIRFEMLEAI 148          
The following BLAST results are available for this feature:
BLAST of CK932950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
PAL2_PHAVU9.418e-6679.50Phenylalanine ammonia-lyase class 2 OS=Phaseolus v... [more]
PAL1_RUBID3.579e-6571.59Phenylalanine ammonia-lyase 1 OS=Rubus idaeus GN=P... [more]
PAL4_ARATH1.776e-6475.58Phenylalanine ammonia-lyase 4 OS=Arabidopsis thali... [more]
PAL2_ORYSJ1.456e-5867.40Phenylalanine ammonia-lyase OS=Oryza sativa subsp.... [more]
PAL2_ORYSI1.456e-5867.40Phenylalanine ammonia-lyase OS=Oryza sativa subsp.... [more]
PAL3_ARATH1.902e-5872.33Phenylalanine ammonia-lyase 3 OS=Arabidopsis thali... [more]
PALY_BROFI4.685e-5772.15Phenylalanine ammonia-lyase OS=Bromheadia finlayso... [more]
PALY_WHEAT1.363e-5674.38Phenylalanine ammonia-lyase OS=Triticum aestivum G... [more]
PAL2_IPOBA4.385e-5570.06Phenylalanine ammonia-lyase OS=Ipomoea batatas PE=... [more]
PAL1_POPKI3.712e-5473.33Phenylalanine ammonia-lyase G1 OS=Populus kitakami... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004349_E01 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932950 ID=CK932950; Name=CK932950; organism=Citrus sinensis; type=EST; length=709bp
GCGGGGAGGAAATCCATTATTGTTATAGACTNNNGAATTTCCTTTAGCTC
ANNNNTTCTTCATCACTCCCATTCATTCATTCTTCTTCTTCTTCTTCTTT
CTACAGTTTTGGTATTTTTTGTAATTGCAGTAACATTTACGTAAAACGAT
ATGGAGAGAGGTGCCACTACTGAGAATGGTCACCAGAACGGTGGCCTGGA
GGGTTTGTGCAAGAATGACAATTACAATTACAGTTCTGGGGATGCGTTGA
ACTGGGGAGTGATGGCGGAGACGTTGAAGGGGAGCCATTTGGAGGAAGTG
AAGCGTATGGTGGCGGAGTACAGGAAGCCGGTGGTCAACCTCGGTGGTGA
GACGTTGACCGTAGCACAGGTGGCTGCCATTGCCACGTCCTCTACGAATG
TGGAGCTGTCGGAATCTGCCAGGGAAGGCGTCAAGGCCAGCAGTAATTGG
GTGATGGAGAGCATGAATAAGGGTACCGACAGTTACGGCGTTACCACTGG
CTTTGGCGCCACTTCTCATCGGAGAACCAAGAACGGCGGTGCTCTTCAGA
AGGAGCTCATTAGATTTTTGAACGCTGGAATCTTTGGAAACGGAACAGAG
TCATCTCACACGCTACCTCACTCAACAACAAGGGCAGCCATGCTTGTGAG
GGTTAACACTCTTCTCCAGGGCTACTCTGGCATCCGATTTGAAATCCTGG
AAGCGATCA
back to top