CK932950

Overview
NameCK932950
Unique NameCK932950
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK932950_ssr80 microsatellite CK932950_ssr80:80..97. BLAST: Citrus ESTs to Prunus persica proteins V1
CK932950_ssr70 microsatellite CK932950_ssr70:70..81. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10798 contig Csv1_Contig10798:1..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932950 vs. ExPASy Swiss-Prot
Match: HUTH_STRPG (Histidine ammonia-lyase OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=hutH PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.864e-13
Identity = 50/128 (39.06%), Postives = 73/128 (57.03%), Query Frame = 1
Query:  331 VVNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSH--RRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAI 708
            V+NL GE+LT+  V AIA       + +SA E V AS   V + +++    YGVTTGFG+  +     ++   LQ+ LIR  +A  FG+       LP    RA ML+R+N+L++GYSGIR   +E +
Sbjct:    4 VINLDGESLTLEDVIAIARQGVACRIDDSAIEAVNASRKIVDDIVSEKRVVYGVTTGFGSLCNVSISPEDTVQLQENLIR-THASGFGD------PLPEDAVRAIMLIRINSLVKGYSGIRLSTIEKL 124          
BLAST of CK932950 vs. ExPASy Swiss-Prot
Match: HUTH_STRP8 (Histidine ammonia-lyase OS=Streptococcus pyogenes serotype M18 GN=hutH PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.864e-13
Identity = 50/128 (39.06%), Postives = 73/128 (57.03%), Query Frame = 1
Query:  331 VVNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSH--RRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAI 708
            V+NL GE+LT+  V AIA       + +SA E V AS   V + +++    YGVTTGFG+  +     ++   LQ+ LIR  +A  FG+       LP    RA ML+R+N+L++GYSGIR   +E +
Sbjct:    4 VINLDGESLTLEDVIAIARQGVACRIDDSAIEAVNASRKIVDDIVSEKRVVYGVTTGFGSLCNVSISPEDTVQLQENLIR-THASGFGD------PLPEDAVRAIMLIRINSLVKGYSGIRLSTIEKL 124          
BLAST of CK932950 vs. ExPASy Swiss-Prot
Match: HUTH_STRSV (Histidine ammonia-lyase OS=Streptococcus sanguinis (strain SK36) GN=hutH PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.434e-13
Identity = 47/128 (36.72%), Postives = 74/128 (57.81%), Query Frame = 1
Query:  331 VVNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSH--RRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAI 708
            V+NL GE LT+  V A+A      E+ + A++ V+AS   V + + +    YGVTTGFG+  +     ++   LQ+ LIR  ++G +G+       LP    RA ML+R+N+L++GYSGIR   +E +
Sbjct:    4 VINLDGEHLTLEDVIAVARHGATCEIDQEAKKAVEASRKIVDDIVREKRVVYGVTTGFGSLCNVSISPEDTTQLQENLIRTHSSG-YGD------PLPEDAVRAIMLIRINSLVKGYSGIRLSTVEKL 124          
BLAST of CK932950 vs. ExPASy Swiss-Prot
Match: HUTH_STRGC (Histidine ammonia-lyase OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=hutH PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.434e-13
Identity = 48/128 (37.50%), Postives = 73/128 (57.03%), Query Frame = 1
Query:  331 VVNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSH--RRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAI 708
            V+NL GE LT+  V A+A      E+ + A++ V+AS   V + + +    YGVTTGFG+  +     ++   LQ+ LIR  +A  FG+       LP    RA ML+R+N+L++GYSGIR   +E +
Sbjct:    4 VINLDGEHLTLEDVIAVARHGATCEIDQEAKKAVEASRKIVDDIVREKRVVYGVTTGFGSLCNVSISPEDTTQLQENLIR-THASGFGD------PLPEDAVRAIMLIRINSLVKGYSGIRLSTVEKL 124          
BLAST of CK932950 vs. ExPASy Swiss-Prot
Match: PALY_RHOTO (Phenylalanine ammonia-lyase OS=Rhodosporidium toruloides GN=PAL PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.023e-11
Identity = 53/178 (29.78%), Postives = 86/178 (48.31%), Query Frame = 1
Query:  232 SSGDALNWGVMAETLKGSHL--------EEVKRMVAEYRKPVVNLGGETLTVAQVAAIATSSTNVELSES--AREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIF---------GNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAI 708
            S+  A+N       + GSHL        + V++M+A      + L G +L +  V + A     V + +S   R  +  S  ++   ++     YGVTTGFG ++  RT++  +LQK L+     G+          G G E+S  LP    R AM +RVN+L +G+S +R  +LEA+
Sbjct:   18 SAKQAVNGASTNLAVAGSHLPTTQVTQVDIVEKMLAAPTDSTLELDGYSLNLGDVVSAARKGRPVRVKDSDEIRSKIDKSVEFLRSQLSMSV--YGVTTGFGGSADTRTEDAISLQKALLEHQLCGVLPSSFDSFRLGRGLENS--LPLEVVRGAMTIRVNSLTRGHSAVRLVVLEAL 191          
BLAST of CK932950 vs. ExPASy Swiss-Prot
Match: HUTH_ANADE (Histidine ammonia-lyase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=hutH PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.976e-11
Identity = 46/125 (36.80%), Postives = 63/125 (50.40%), Query Frame = 1
Query:  340 LGGETLTVAQVAAIATSSTNVELSESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGG--ALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAI 708
            L GETLT+ QV A+AT +    L+ +ARE V+ S   V   +  G   YG+ TGFG  +  R        LQ+ L+    AG+          LP +  RA +L+R N L +G SGIR   LE +
Sbjct:    6 LDGETLTLEQVRAVATGAARAALAPAARERVRRSRALVDARLEDGEAHYGINTGFGTLAEVRIPRADLERLQRNLVLSHAAGV-------GAPLPLAEARALVLLRANVLAKGVSGIRERTLELL 123          
BLAST of CK932950 vs. ExPASy Swiss-Prot
Match: PAL4_POPKI (Phenylalanine ammonia-lyase G4 (Fragment) OS=Populus kitakamiensis GN=PALG4 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.629e-11
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1
Query:  601 SSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAI 708
            S+HTLPHS +RAAMLVR+NTLLQGYSGIRFEILEAI
Sbjct:    1 STHTLPHSASRAAMLVRINTLLQGYSGIRFEILEAI 36          
The following BLAST results are available for this feature:
BLAST of CK932950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
HUTH_STRPG1.864e-1339.06Histidine ammonia-lyase OS=Streptococcus pyogenes ... [more]
HUTH_STRP81.864e-1339.06Histidine ammonia-lyase OS=Streptococcus pyogenes ... [more]
HUTH_STRSV2.434e-1336.72Histidine ammonia-lyase OS=Streptococcus sanguinis... [more]
HUTH_STRGC2.434e-1337.50Histidine ammonia-lyase OS=Streptococcus gordonii ... [more]
PALY_RHOTO1.023e-1129.78Phenylalanine ammonia-lyase OS=Rhodosporidium toru... [more]
HUTH_ANADE2.976e-1136.80Histidine ammonia-lyase OS=Anaeromyxobacter dehalo... [more]
PAL4_POPKI6.629e-1188.89Phenylalanine ammonia-lyase G4 (Fragment) OS=Popul... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004349_E01 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932950 ID=CK932950; Name=CK932950; organism=Citrus sinensis; type=EST; length=709bp
GCGGGGAGGAAATCCATTATTGTTATAGACTNNNGAATTTCCTTTAGCTC
ANNNNTTCTTCATCACTCCCATTCATTCATTCTTCTTCTTCTTCTTCTTT
CTACAGTTTTGGTATTTTTTGTAATTGCAGTAACATTTACGTAAAACGAT
ATGGAGAGAGGTGCCACTACTGAGAATGGTCACCAGAACGGTGGCCTGGA
GGGTTTGTGCAAGAATGACAATTACAATTACAGTTCTGGGGATGCGTTGA
ACTGGGGAGTGATGGCGGAGACGTTGAAGGGGAGCCATTTGGAGGAAGTG
AAGCGTATGGTGGCGGAGTACAGGAAGCCGGTGGTCAACCTCGGTGGTGA
GACGTTGACCGTAGCACAGGTGGCTGCCATTGCCACGTCCTCTACGAATG
TGGAGCTGTCGGAATCTGCCAGGGAAGGCGTCAAGGCCAGCAGTAATTGG
GTGATGGAGAGCATGAATAAGGGTACCGACAGTTACGGCGTTACCACTGG
CTTTGGCGCCACTTCTCATCGGAGAACCAAGAACGGCGGTGCTCTTCAGA
AGGAGCTCATTAGATTTTTGAACGCTGGAATCTTTGGAAACGGAACAGAG
TCATCTCACACGCTACCTCACTCAACAACAAGGGCAGCCATGCTTGTGAG
GGTTAACACTCTTCTCCAGGGCTACTCTGGCATCCGATTTGAAATCCTGG
AAGCGATCA
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