CK932957

Overview
NameCK932957
Unique NameCK932957
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK932957_ssr682 microsatellite CK932957_ssr682:682..693. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1506 contig Csv1_Contig1506:1..730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932957 vs. ExPASy Swiss-Prot
Match: HSP12_SOLPE (17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.563e-21
Identity = 47/98 (47.96%), Postives = 66/98 (67.35%), Query Frame = 3
Query:  255 MDWLESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPENVKLDQIKAHVDNGVLTVIVPKD 548
            +DW E+P AH+FK D+PG  +E +KV++E+  +L+I GE   +KE+   K   WH  ER +   G F R   LPEN K+DQ+KA ++NGVLTV VPK+
Sbjct:   49 IDWKETPEAHVFKADLPGLKKEEVKVEVEEDRVLQISGERNVEKED---KNDTWHRVERSS---GKFMRRFRLPENAKMDQVKASMENGVLTVTVPKE 140          
BLAST of CK932957 vs. ExPASy Swiss-Prot
Match: HSP15_SOYBN (17.6 kDa class I heat shock protein OS=Glycine max GN=HSP17.6-L PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.130e-20
Identity = 51/112 (45.54%), Postives = 72/112 (64.29%), Query Frame = 3
Query:  255 MDWLESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPENVKLDQIKAHVDNGVLTVIVPKDANHKKSSVRNINIT 590
            +DW E+  AH+ K D+PG  +E +KVQIED  +L+I GE   +KE+   K   WH  +R +   G F R   LPEN K++Q+KA ++NGVLTV +PK+   KKS V+ I I+
Sbjct:   49 VDWKETQEAHVLKADIPGLKKEEVKVQIEDDRVLQISGERNVEKED---KNDTWHRVDRSS---GKFMRRFRLPENAKVEQVKACMENGVLTVTIPKE-EVKKSDVKPIEIS 153          
BLAST of CK932957 vs. ExPASy Swiss-Prot
Match: HS166_ORYSJ (16.6 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP16.6 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.076e-19
Identity = 46/112 (41.07%), Postives = 70/112 (62.50%), Query Frame = 3
Query:  255 MDWLESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPENVKLDQIKAHVDNGVLTVIVPKDANHKKSSVRNINIT 590
            +DW E+P+AH+F  D+PG  ++  KV++EDG +L I GE A++++     +  WH  ER +   G F R   LP   ++DQ+ A +DNGVLTV VPK+   KK  ++ I I+
Sbjct:   42 VDWKETPTAHVFTADLPGVRKDQAKVEVEDGGVLVISGERAREEDVDGKNDERWHHVERSS---GKFQRRFRLPRGARVDQVSASMDNGVLTVTVPKEET-KKPQLKAIPIS 149          
BLAST of CK932957 vs. ExPASy Swiss-Prot
Match: HS189_ORYSJ (18.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.9 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.169e-18
Identity = 50/117 (42.74%), Postives = 71/117 (60.68%), Query Frame = 3
Query:  243 STALMDWLESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPENVKLDQIKAHVDNGVLTVIVPKDANHKKSSVRNINITS 593
            STA MDW E+ +AH+F  D+PG  RE ++V++E+  +LRI G+ A+  EE   +   WH  ER +     F R + LP N   D + A +DNGVLT+ +PKD N +K   R I IT+
Sbjct:   68 STASMDWKETAAAHVFMADMPGVRREEVRVEVEEEKVLRISGQRARAAEEKGER---WHRVERSS---ERFVRTVRLPPNANTDGVHAALDNGVLTITIPKD-NDRKPHARIIPITN 177          
BLAST of CK932957 vs. ExPASy Swiss-Prot
Match: HSP41_SOYBN (22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.604e-18
Identity = 48/118 (40.68%), Postives = 71/118 (60.17%), Query Frame = 3
Query:  243 STALMDWLESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPENVKLDQIKAHVDNGVLTVIVPKDANHKKSSVRNINITSK 596
            S A +DW E+P  H+  +DVPG  RE IKV++E+  +LR+ GE  K++E+   K   WH  ER     G F R+  LP+NV LD +KA ++NGVLT+ + K +  K    R ++I  +
Sbjct:   65 SPARVDWKETPEGHVIMLDVPGLKREEIKVEVEENRVLRVSGERKKEEEK---KGDHWHRVER---SYGKFWRQFRLPQNVDLDSVKAKLENGVLTLTLDKLSPGKIKGPRVVSIAGE 176          
BLAST of CK932957 vs. ExPASy Swiss-Prot
Match: HSP41_PEA (22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.577e-18
Identity = 45/118 (38.14%), Postives = 73/118 (61.86%), Query Frame = 3
Query:  243 STALMDWLESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPENVKLDQIKAHVDNGVLTVIVPKDANHKKSSVRNINITSK 596
            S A +DW E+P  H+  +DVPG  +++IK+++E+  +LR+ GE    K+E + K   WH  ER     G F R+ +LP+NV LD +KA ++NGVLT+ + K ++ K    R ++I  +
Sbjct:   73 SHARVDWKETPEGHVIMVDVPGLKKDDIKIEVEENRVLRVSGE---RKKEEDKKGDHWHRVER---SYGKFWRQFKLPQNVDLDSVKAKMENGVLTLTLHKLSHDKIKGPRMVSIVEE 184          
BLAST of CK932957 vs. ExPASy Swiss-Prot
Match: HSP22_ARATH (22.0 kDa heat shock protein OS=Arabidopsis thaliana GN=HSP22.0 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.092e-16
Identity = 40/118 (33.90%), Postives = 71/118 (60.17%), Query Frame = 3
Query:  243 STALMDWLESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDKEEANTKETVWHVAERRAGGRGDFSREIELPENVKLDQIKAHVDNGVLTVIVPKDANHKKSSVRNINITSK 596
            S A +DW E+   H   +D+PG  ++ +K+++E+  +LR+ GE  +++E+   K   WH  ER     G F R+ +LP+NV ++ +KA ++NGVLT+ + K +  K    R +NI ++
Sbjct:   69 SPARVDWKETAEGHEIMLDIPGLKKDEVKIEVEENGVLRVSGERKREEEK---KGDQWHRVER---SYGKFWRQFKLPDNVDMESVKAKLENGVLTINLTKLSPEKVKGPRVVNIAAE 180          
BLAST of CK932957 vs. ExPASy Swiss-Prot
Match: HS219_ORYSJ (21.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP21.9 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.597e-15
Identity = 44/118 (37.29%), Postives = 67/118 (56.78%), Query Frame = 3
Query:  249 ALMDWLESPSAHIFKIDVPGYSRENIKVQIEDGN-ILRIIGE----GAKDKEEANTKETVWHVAERRAGGRGDFSREIELPENVKLDQIKAHVDNGVLTVIVPKDANHKKSSVRNINI 587
            A  DW E+P AH+  +DVPG  R +++V++++ + +LR+ GE    GA ++EE       WH AER A   G F R   +P    + ++ A +D+GVLTV VPK   H+    R + I
Sbjct:   72 ARCDWKETPEAHVVTVDVPGVRRGDVRVEVDEASRVLRVSGERRRAGAAEEEEGERDGVRWHRAERAA---GRFWRRFRMPPGADVGRVAARLDDGVLTVTVPKVPGHRGREPRVVAI 186          
BLAST of CK932957 vs. ExPASy Swiss-Prot
Match: HS178_ORYSJ (17.8 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.8 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 6.004e-15
Identity = 42/116 (36.21%), Postives = 62/116 (53.45%), Query Frame = 3
Query:  255 MDWLESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEG-------------AKDKEEANTKETVWHVAERRAGGRGDFSREIELPENVKLDQIKAHVDNGVLTVIVPKDANHKK 563
            MDW E+P AH+F++D+PG +++ + V++ DG+ILR+   G             A  +EE       WH  ER AG R     +  LPE+   D+  A + +GVLTV VPK    K+
Sbjct:   29 MDWRETPVAHVFEMDLPGLAKDQVAVEVVDGHILRVRAGGEHEDANNAAKAGKASGEEEEENDGVRWHCRERAAGRRRAAVTQFRLPEDAAADEASARMADGVLTVTVPKRKGKKR 144          
BLAST of CK932957 vs. ExPASy Swiss-Prot
Match: HS232_ORYSJ (23.2 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP23.2 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.747e-14
Identity = 47/118 (39.83%), Postives = 66/118 (55.93%), Query Frame = 3
Query:  243 STALMDWLESPSAHIFKIDVPGYSRENIKVQIEDGNILRIIGEGAKDK-EEANTKETVWHVAERRAGGRGDFSREIELPENVKLDQIKAHVDNGVLTVIVPKDANHKKSSVRNINITS 593
            S A +DW E+  AH   +DVPG  +E+++V++ED  +LRI GE  +++  E       WH  ER     G F R++ LP+N  LD I A +DNGVLTV   K A  +    R + I S
Sbjct:   74 SMARVDWRETGDAHEVVVDVPGMRKEDLRVEVEDNRVLRISGERRREETTEQKGGGDHWHREER---SYGRFWRQLRLPDNADLDSIAASLDNGVLTVRFRKLAPDQIKGPRVVGIAS 188          
The following BLAST results are available for this feature:
BLAST of CK932957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
HSP12_SOLPE9.563e-2147.9617.6 kDa class I heat shock protein OS=Solanum per... [more]
HSP15_SOYBN2.130e-2045.5417.6 kDa class I heat shock protein OS=Glycine max... [more]
HS166_ORYSJ3.076e-1941.0716.6 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS189_ORYSJ1.169e-1842.7418.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP41_SOYBN2.604e-1840.6822.0 kDa class IV heat shock protein OS=Glycine ma... [more]
HSP41_PEA7.577e-1838.1422.7 kDa class IV heat shock protein OS=Pisum sati... [more]
HSP22_ARATH7.092e-1633.9022.0 kDa heat shock protein OS=Arabidopsis thalian... [more]
HS219_ORYSJ4.597e-1537.2921.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS178_ORYSJ6.004e-1536.2117.8 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS232_ORYSJ1.747e-1439.8323.2 kDa heat shock protein OS=Oryza sativa subsp.... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004349_E08 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932957 ID=CK932957; Name=CK932957; organism=Citrus sinensis; type=EST; length=730bp
GGGGCTTTCTGAGAACTATTATCATACACAGCAGAGGATGAGGCTTGTAG
AATATTCTGGACATTCAACGATTACTCGAACTCCGCTCTTATAAGCCAAC
CAAACAAAACCTCGCACTCCTCCATCCCCTTTACGCCACAATCCAAAATC
AAGATTACAATCAAACAACGGCTGGTGACTTTTTTGGGTACCCTTTCAGG
CGCTTTTTCATGAGCCCTCCTGTCTTCCGTGAATGGTCCGGATCGACAGC
CCTGATGGATTGGCTCGAATCCCCAAGTGCCCACATATTCAAGATCGACG
TCCCAGGATATAGCAGGGAGAACATAAAGGTACAGATTGAAGACGGGAAC
ATATTGCGCATAATAGGAGAGGGTGCTAAAGATAAAGAGGAGGCAAATAC
AAAAGAGACAGTTTGGCATGTAGCAGAAAGGCGTGCTGGCGGAAGAGGAG
ACTTTTCTCGGGAAATTGAATTGCCCGAAAATGTGAAGTTGGATCAAATC
AAGGCCCATGTGGATAATGGGGTTCTTACCGTTATTGTGCCCAAAGATGC
CAATCACAAGAAGAGTAGTGTTAGGAATATCAACATCACTAGCAAGCTCT
AGTTGAGTAGATTCTATGAAATTATTAGGCTCCCTCTTCTCAGCTGTCCA
ATTTCCAAAATGGGCTTCTGATGTAAGAATAAATAATAATAATAACAATC
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top