CK932994

Overview
NameCK932994
Unique NameCK932994
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length748
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932994 vs. ExPASy Swiss-Prot
Match: UBC12_YARLI (NEDD8-conjugating enzyme UBC12 OS=Yarrowia lipolytica GN=UBC12 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.194e-13
Identity = 41/133 (30.83%), Postives = 70/133 (52.63%), Query Frame = 2
Query:  131 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV*HPXXXXXXXXXXXXLKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY 529
            A  R+ K+L +L   P T  +  P AED+ +++ T+  P +  Y GG F  + +  P++P +PPKV    KV HP            L+E W P L+++ V++ +  L  +PN  DPL  + AH   +++ ++
Sbjct:   25 AQLRVQKDLSELSL-PSTMKTHFPSAEDIMNFELTVR-PDEGFYQGGEFRFSFYVNPNFPHEPPKVKCLQKVYHPNIDLEGNVCLNILREDWKPVLSLNAVMIGLQYLFLEPNASDPLNKDAAHQMTANREEF 155          
BLAST of CK932994 vs. ExPASy Swiss-Prot
Match: UBC9_DICDI (Sumo-conjugating enzyme ubc9 OS=Dictyostelium discoideum GN=ubc9 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.560e-13
Identity = 45/152 (29.61%), Postives = 73/152 (48.03%), Query Frame = 2
Query:  128 MASKRILKELKDLQKDPPTSCSAGPVAE-----DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV*HPXXXXXXXXXXXXLKEQ--WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYGATARSWTQKY 562
            ++S R+ +E K+ ++D P    A P        +++ W   I G   + + GGV+ + + F  DYP KPPK  F     HP            L E+  W P++TI  VLL I  LL +PNP  P      H++ ++K +Y    ++ ++ Y
Sbjct:    4 ISSARLSEERKNWRRDHPYGFFARPSTNTDGSLNLYVWNCGIPGKTKTNWEGGVYPLIMEFTEDYPSKPPKCRFPKDFFHPNVYPSGTVCLSILNEEADWKPSVTIKTVLLGIQDLLDNPNPKSPAQQLPIHLFLTNKEEYDKKVKAQSKVY 155          
BLAST of CK932994 vs. ExPASy Swiss-Prot
Match: UBE2C_XENLA (Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevis GN=ube2c PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.475e-13
Identity = 41/129 (31.78%), Postives = 64/129 (49.61%), Query Frame = 2
Query:  137 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV*HPXXXXXXXXXXXXLKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKA 523
            KR+ +EL  L        SA P ++++F W  TI G   + Y    + +++ FP  YP+  P V F T   HP            LK++WS    +  +LLS+ SLL +PN + PL P  A ++++  A
Sbjct:   33 KRLQQELMTLMMSGDKGISAFPESDNLFKWIGTIDGAVGTVYEDLRYKLSLEFPSGYPYNAPTVKFVTPCFHPNVDSHGNICLDILKDKWSALYDVRTILLSLQSLLGEPNNESPLNPYAAELWQNQTA 161          
BLAST of CK932994 vs. ExPASy Swiss-Prot
Match: UBC12_DICDI (NEDD8-conjugating enzyme Ubc12 OS=Dictyostelium discoideum GN=ube2m PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.475e-13
Identity = 43/135 (31.85%), Postives = 64/135 (47.41%), Query Frame = 2
Query:  146 LKELKDLQK-DPPTSCSAG-PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV*HPXXXXXXXXXXXXLKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYGATAR 544
            L+  KD+ + + PT C+       D+ ++  +I  P D  Y    F  TI+ P  YP+ PPKV   T V HP            L++ W P L I  V+  + +L  +PNPDDPL  + A +   +K  + A  R
Sbjct:   80 LRAQKDIDEMEVPTGCAVSFKDTNDILNFNLSIT-PTDGLYQSATFQFTINIPSTYPYDPPKVHCDTLVYHPNIDLEGHVCLNILRQDWMPVLNIGTVIFGLMTLFLEPNPDDPLNKDAAQLMIDNKKTFEANVR 213          
BLAST of CK932994 vs. ExPASy Swiss-Prot
Match: UBC12_CANGA (NEDD8-conjugating enzyme UBC12 OS=Candida glabrata GN=UBC12 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.475e-13
Identity = 43/138 (31.16%), Postives = 64/138 (46.38%), Query Frame = 2
Query:  131 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV*HPXXXXXXXXXXXXLKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYGATAR 544
            A  R+ K++++L+  P    +   +          I+ P +  Y GG F  T  F   YP  PPKV    K+ HP            L+E WSPAL +  ++L + SL  +PN +DPL  E A +   DK ++G   R
Sbjct:   33 AKLRLQKDIEELELPPTVRVNIISLDNHKEMSLNIIIIPDEGFYKGGKFRFTATFLETYPIDPPKVICNNKIFHPNIDPHGKICLNILREDWSPALDLQCIVLGLLSLFQEPNGNDPLNKEAAEVLNKDKLEFGNLVR 170          
BLAST of CK932994 vs. ExPASy Swiss-Prot
Match: UBC6_ARATH (Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis thaliana GN=UBC6 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.927e-13
Identity = 47/148 (31.76%), Postives = 68/148 (45.95%), Query Frame = 2
Query:  128 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV*HP-XXXXXXXXXXXXLKEQWSPALTISKVLLS-ICSLLTDPNPDDPLVPEIAHMYKSDKAKYGATARSWTQKYA 565
            MAS    +E+ D+ K   +      V +D+  +  T  GP DS Y GGV+ + +  P  YP+K P V F  K+ HP             + + WSP   +  V  S +  LL  PNP DP   E A +   D+A Y    + + +KYA
Sbjct:    1 MASPSKRREM-DMMKLMMSDYKVDTVNDDLQMFYVTFHGPTDSLYQGGVWKIKVELPEAYPYKSPSVGFVNKIYHPNVDESSGAVCLDVINQTWSPMFDLINVFESFLPQLLLYPNPSDPFNGEAASLLMRDRAAYELKVKEYCEKYA 147          
BLAST of CK932994 vs. ExPASy Swiss-Prot
Match: UBC21_CAEEL (Probable ubiquitin-conjugating enzyme E2 21 OS=Caenorhabditis elegans GN=ubc-21 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.927e-13
Identity = 42/126 (33.33%), Postives = 62/126 (49.21%), Query Frame = 2
Query:  236 IMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVA---------------FRTKV*HPXXXXXXXXXXXX-LKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYGATARSWTQKYA 565
            I GP  +PYAGG F + +  P  YPF+PPKV                F T++ HP             LK++W+ +LT+  VLLS+ ++L  P P DP    +A  + ++   + ATA  WT  +A
Sbjct:   57 IKGPEGTPYAGGTFEIKVDIPEHYPFEPPKVTEIIFHIRAFEYIQAKFVTRIWHPNISSQTGTICLDILKDKWTASLTLRTVLLSLQAMLCSPEPSDPQDAVVAKQFINNYPMFTATAVYWTSYFA 182          
BLAST of CK932994 vs. ExPASy Swiss-Prot
Match: UB2L6_MOUSE (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Mus musculus GN=Ube2l6 PE=2 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 5.927e-13
Identity = 46/150 (30.67%), Postives = 73/150 (48.67%), Query Frame = 2
Query:  125 IMASKRILKELKDLQKD-PPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV*HPXXXXXXXXXXXXL-KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYGATARSWTQKYAM 568
            +MASKR+ KEL+ L K+ PP          ++  W   ++ P   PY    F V I FP +YPFKPP + F TK+ HP            +  E W P     +VL ++  L++ PN ++P+  E+A +   +   +   A  +T K+ +
Sbjct:    1 MMASKRVAKELESLSKELPPYLRQLSSDDANVLVWHMLLL-PDQLPYGLKAFQVRIDFPREYPFKPPTLRFTTKIYHPNVREDGLVCLPLISNENWKPYTKPYQVLEALNVLVSKPNLEEPVRLELADLLTQNPEMFRKKAEEFTLKFGV 149          
BLAST of CK932994 vs. ExPASy Swiss-Prot
Match: UB2L6_BOVIN (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Bos taurus GN=UBE2L6 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.741e-13
Identity = 46/151 (30.46%), Postives = 74/151 (49.01%), Query Frame = 2
Query:  131 ASKRILKELKDLQKDPP----TSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV*HPXXXXXXXXXXXXL-KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYGATARSWTQKYAM 568
            ASKR+ KEL+DLQK+ P      CS     +++  W A ++ P   PY    F + I FP +YPF+PP V F T++ HP            + K+ W  +    +VL ++  L+  P P  P+  E+A     D   +   A+ +T ++ +
Sbjct:    3 ASKRVAKELEDLQKELPKYLRNLCSE---EDNVLVWHALLL-PERPPYNLKAFRLCISFPREYPFQPPTVKFTTRIYHPNVDRDGRVCLPIISKKNWKASTRTCQVLEALNMLVNQPEPGQPVRLELAEQLTQDPELFDQMAQEFTLQFGV 149          
BLAST of CK932994 vs. ExPASy Swiss-Prot
Match: UBC7_WHEAT (Ubiquitin-conjugating enzyme E2 7 OS=Triticum aestivum GN=UBC7 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.724e-12
Identity = 38/128 (29.69%), Postives = 62/128 (48.44%), Query Frame = 2
Query:  212 DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV*HP------------XXXXXXXXXXXXLKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYGATARSWTQK 559
            ++F WQ TI+GPP++ Y GG F   + FP +YP  PP V F +++ HP                          E+W+P  T+  ++LSI S+L+ PN + P   E A  ++  + ++    R   +K
Sbjct:   36 NVFEWQVTIIGPPETLYDGGYFNAIMSFPQNYPNSPPTVRFTSEMWHPNVYPDGRVCISIHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANIEAAKDWREKQDEFKKKVRRAVRK 163          
The following BLAST results are available for this feature:
BLAST of CK932994 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
UBC12_YARLI1.194e-1330.83NEDD8-conjugating enzyme UBC12 OS=Yarrowia lipolyt... [more]
UBC9_DICDI1.560e-1329.61Sumo-conjugating enzyme ubc9 OS=Dictyostelium disc... [more]
UBE2C_XENLA3.475e-1331.78Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevi... [more]
UBC12_DICDI3.475e-1331.85NEDD8-conjugating enzyme Ubc12 OS=Dictyostelium di... [more]
UBC12_CANGA3.475e-1331.16NEDD8-conjugating enzyme UBC12 OS=Candida glabrata... [more]
UBC6_ARATH5.927e-1331.76Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis t... [more]
UBC21_CAEEL5.927e-1333.33Probable ubiquitin-conjugating enzyme E2 21 OS=Cae... [more]
UB2L6_MOUSE5.927e-1330.67Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Mus mu... [more]
UB2L6_BOVIN7.741e-1330.46Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Bos ta... [more]
UBC7_WHEAT1.724e-1229.69Ubiquitin-conjugating enzyme E2 7 OS=Triticum aest... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004348_H08 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIF_H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932994 ID=CK932994; Name=CK932994; organism=Citrus sinensis; type=EST; length=748bp
GGGGATCTGCTCCGACGTCGTTCCCCTTTCTCACTGCTATTGCCCTCCGA
TCTCCTTCTTCGCCGCACAAGTGTTGCAGATCCTAGGTTTGTTGTAGCTT
TAACTTTTAATAATCCGTTGAAGCATCATGGCTTCGAAGCGTATTTTGAA
GGAACTCAAGGATTTGCAGAAGGATCCTCCCACGTCTTGCAGCGCCGGTC
CGGTGGCTGAAGACATGTTCCACTGGCAAGCAACAATTATGGGCCCCCCT
GATAGTCCATATGCAGGAGGTGTATTTTTGGTTACCATTCATTTTCCTCC
GGATTATCCCTTCAAGCCCCCAAAGGTTGCTTTTAGGACCAAGGTCTAGC
ACCCAAACATCAACAGCAATGGAAGCATATNNNNTGATATCCTTAAAGAA
CAGTGGAGCCCAGCTCTTACCATTTCAAAGGTCCTGCTTTCTATCTGCTC
GTTGCTTACTGACCCAAATCCTGACGACCCGCTTGTACCGGAGATTGCTC
ACATGTACAAGTCCGACAAGGCCAAATATGGAGCCACTGCCAGGAGCTGG
ACACAGAAGTATGCCATGGGATAGTTGTTTGGATATTGCAGAAATGGAAC
TCATTTATATGAAATATGTTGTGTTTTTTTCTCCTTTTTCTTCAATCTTG
CTTCGGGAAGGGGATGTTTGGTATTTTAGTAATGAGGAAGGATGTTTGGG
GAGGAGTTGCAAGGGCAAGACGTTTTTGTTAATGTTGAATGTTTCTTG
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