CK932994

Overview
NameCK932994
Unique NameCK932994
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length748
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2066 contig Csv1_Contig2066:83..830. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932994 vs. ExPASy Swiss-Prot
Match: UBE2F_XENLA (NEDD8-conjugating enzyme UBE2F OS=Xenopus laevis GN=ube2f PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.247e-11
Identity = 44/148 (29.73%), Postives = 67/148 (45.27%), Query Frame = 2
Query:  143 ILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV*HPXXXXXXXXXXXXLKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKSDKAKYGATARSWTQKYA 565
            ++KE+ +L+ + P +C       +  H+    + P +S Y GG F   I  P  Y   PPKV   T++ HP            L+E       W+P  T+  V+  + SL TD  N DDPL  E A  +  DK +Y      + ++YA
Sbjct:   37 LVKEVAELEANLPCTCKVNFPDPNKLHYFHLTVSPDESYYQGGRFQFEIEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKDEYRNKVEDYIKRYA 184          
BLAST of CK932994 vs. ExPASy Swiss-Prot
Match: UBC32_ARATH (Ubiquitin carrier protein E2 32 OS=Arabidopsis thaliana GN=UBC32 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.247e-11
Identity = 37/115 (32.17%), Postives = 58/115 (50.43%), Query Frame = 2
Query:  131 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRT-KV*HPXXXXXXXXXXXXLKEQWSPALTISKVLLSICSLL-TDPN 469
            A KRIL+E+K++Q +P     + P+ E++F WQ  I GP D+ + GG++   I  P DYPFKPP     T                    E W P+ ++   L+++ + + T PN
Sbjct:   12 AVKRILQEVKEMQANPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPADYPFKPPSFMLLTPNGRFETNTKICLSISNYHPEHWQPSWSVRTALVALIAFMPTSPN 126          
BLAST of CK932994 vs. ExPASy Swiss-Prot
Match: UBC4_MIMIV (Probable bifunctional E2/E3 enzyme R795 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R795 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.245e-11
Identity = 38/143 (26.57%), Postives = 63/143 (44.06%), Query Frame = 2
Query:  140 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV*HPXXXXXXXXXXXXLKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYGATARSWTQKYAM 568
            R+ +E+ D+ K+           +D+  W+    GP  +PY  G +L  I F  +YP   P + F T + H             L   ++P + IS +L  I  LL +P+ +DPL   +A +Y      Y A    +  K+A+
Sbjct: 1137 RVQREIVDVMKNQHPDIDVYINEQDISFWKIVFKGPDSTPYKNGTWLAYIQFTEEYPNIAPNIRFVTPIKHCNINNYGRVCHSILDRNYTPNVKISLILQCIYGLLLNPDVNDPLDTNLAMIYYDANGLYEAQIIDYVNKFAL 1279          
BLAST of CK932994 vs. ExPASy Swiss-Prot
Match: UBC12_XENTR (NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropicalis GN=ube2m PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.245e-11
Identity = 40/131 (30.53%), Postives = 64/131 (48.85%), Query Frame = 2
Query:  131 ASKRILKELKDLQKDPPTSCSAG-PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV*HPXXXXXXXXXXXXLKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDK 520
            A  RI K++ +L    P +C       +D+ +++  I  P +  Y GG F+ +      YP  PPKV   T V HP            L+E W P LTI+ ++  +  L  +PNP+DPL  E A + ++++
Sbjct:   30 AQLRIQKDINELNL--PKTCEIEFSDHDDLLNFKLVIC-PDEGFYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNR 157          
BLAST of CK932994 vs. ExPASy Swiss-Prot
Match: UB2J1_MOUSE (Ubiquitin-conjugating enzyme E2 J1 OS=Mus musculus GN=Ube2j1 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.245e-11
Identity = 38/110 (34.55%), Postives = 54/110 (49.09%), Query Frame = 2
Query:  131 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRT-KV*HPXXXXXXXXXXXXLKEQWSPALTISKVLLSICSLL 457
            A KR++KE  +L KDP     A P+ +++F W  T+ GPPDS + GGV+   I  PP+YP KPP +   T                    E W P+ +I   LL+I   +
Sbjct:   11 AVKRLMKEAAEL-KDPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDGGVYHGRIVLPPEYPMKPPSIILLTANGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIGFM 119          
BLAST of CK932994 vs. ExPASy Swiss-Prot
Match: UB2J1_HUMAN (Ubiquitin-conjugating enzyme E2 J1 OS=Homo sapiens GN=UBE2J1 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.245e-11
Identity = 38/110 (34.55%), Postives = 54/110 (49.09%), Query Frame = 2
Query:  131 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRT-KV*HPXXXXXXXXXXXXLKEQWSPALTISKVLLSICSLL 457
            A KR++KE  +L KDP     A P+ +++F W  T+ GPPDS + GGV+   I  PP+YP KPP +   T                    E W P+ +I   LL+I   +
Sbjct:   11 AVKRLMKEAAEL-KDPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDGGVYHGRIVLPPEYPMKPPSIILLTANGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIGFM 119          
BLAST of CK932994 vs. ExPASy Swiss-Prot
Match: UBC12_XENLA (NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis GN=ube2m PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.462e-11
Identity = 40/131 (30.53%), Postives = 64/131 (48.85%), Query Frame = 2
Query:  131 ASKRILKELKDLQKDPPTSCSAG-PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV*HPXXXXXXXXXXXXLKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDK 520
            A  RI K++ +L    P +C       +D+ +++  I  P +  Y GG F+ +      YP  PPKV   T V HP            L+E W P LTI+ ++  +  L  +PNP+DPL  E A + ++++
Sbjct:   30 AQLRIQKDITELNL--PKTCEIEFSDHDDLLNFKLVIC-PDEGFYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNR 157          
The following BLAST results are available for this feature:
BLAST of CK932994 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
UBE2F_XENLA4.247e-1129.73NEDD8-conjugating enzyme UBE2F OS=Xenopus laevis G... [more]
UBC32_ARATH4.247e-1132.17Ubiquitin carrier protein E2 32 OS=Arabidopsis tha... [more]
UBC4_MIMIV7.245e-1126.57Probable bifunctional E2/E3 enzyme R795 OS=Acantha... [more]
UBC12_XENTR7.245e-1130.53NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropical... [more]
UB2J1_MOUSE7.245e-1134.55Ubiquitin-conjugating enzyme E2 J1 OS=Mus musculus... [more]
UB2J1_HUMAN7.245e-1134.55Ubiquitin-conjugating enzyme E2 J1 OS=Homo sapiens... [more]
UBC12_XENLA9.462e-1130.53NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis G... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004348_H08 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIF_H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932994 ID=CK932994; Name=CK932994; organism=Citrus sinensis; type=EST; length=748bp
GGGGATCTGCTCCGACGTCGTTCCCCTTTCTCACTGCTATTGCCCTCCGA
TCTCCTTCTTCGCCGCACAAGTGTTGCAGATCCTAGGTTTGTTGTAGCTT
TAACTTTTAATAATCCGTTGAAGCATCATGGCTTCGAAGCGTATTTTGAA
GGAACTCAAGGATTTGCAGAAGGATCCTCCCACGTCTTGCAGCGCCGGTC
CGGTGGCTGAAGACATGTTCCACTGGCAAGCAACAATTATGGGCCCCCCT
GATAGTCCATATGCAGGAGGTGTATTTTTGGTTACCATTCATTTTCCTCC
GGATTATCCCTTCAAGCCCCCAAAGGTTGCTTTTAGGACCAAGGTCTAGC
ACCCAAACATCAACAGCAATGGAAGCATATNNNNTGATATCCTTAAAGAA
CAGTGGAGCCCAGCTCTTACCATTTCAAAGGTCCTGCTTTCTATCTGCTC
GTTGCTTACTGACCCAAATCCTGACGACCCGCTTGTACCGGAGATTGCTC
ACATGTACAAGTCCGACAAGGCCAAATATGGAGCCACTGCCAGGAGCTGG
ACACAGAAGTATGCCATGGGATAGTTGTTTGGATATTGCAGAAATGGAAC
TCATTTATATGAAATATGTTGTGTTTTTTTCTCCTTTTTCTTCAATCTTG
CTTCGGGAAGGGGATGTTTGGTATTTTAGTAATGAGGAAGGATGTTTGGG
GAGGAGTTGCAAGGGCAAGACGTTTTTGTTAATGTTGAATGTTTCTTG
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