CK932994

Overview
NameCK932994
Unique NameCK932994
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length748
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2066 contig Csv1_Contig2066:83..830. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932994 vs. ExPASy Swiss-Prot
Match: UBE2N_RAT (Ubiquitin-conjugating enzyme E2 N OS=Rattus norvegicus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.519e-28
Identity = 62/144 (43.06%), Postives = 86/144 (59.72%), Query Frame = 2
Query:  137 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV*HPXXXXXXXXXXXXLKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYGATARSWTQKYAM 568
            +RI+KE + L  +P     A P   +  ++   I GP DSP+ GG F + +  P +YP   PKV F TK+ HP            LK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +KS++A+   TAR+WT+ YAM
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKSNEAQAIETARAWTRLYAM 149          
BLAST of CK932994 vs. ExPASy Swiss-Prot
Match: UBE2N_DICDI (Probable ubiquitin-conjugating enzyme E2 N OS=Dictyostelium discoideum GN=ube2n PE=3 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.113e-27
Identity = 62/143 (43.36%), Postives = 86/143 (60.14%), Query Frame = 2
Query:  137 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV*HPXXXXXXXXXXXXLKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYGATARSWTQKYA 565
            KRI+KE + L  +P    SA P  ++  +++  I GP DSP+ GGVF + +    DYP   PKV F TK+ HP            LK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +K+++ +  A AR WT+ YA
Sbjct:    6 KRIIKETQRLMTEPAPGISATPATDNFRYFKVAISGPLDSPFEGGVFNLELFLTDDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEHWKTNEKEAMARAREWTRLYA 148          
BLAST of CK932994 vs. ExPASy Swiss-Prot
Match: UBE2N_PONAB (Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii GN=UBE2N PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.898e-27
Identity = 61/144 (42.36%), Postives = 86/144 (59.72%), Query Frame = 2
Query:  137 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV*HPXXXXXXXXXXXXLKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYGATARSWTQKYAM 568
            +RI+KE + L  +P     A P   +  ++   I GP DSP+ GG F + +  P +YP   PKV F TK+ HP            LK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +K+++A+   TAR+WT+ YAM
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          
BLAST of CK932994 vs. ExPASy Swiss-Prot
Match: UBE2N_MOUSE (Ubiquitin-conjugating enzyme E2 N OS=Mus musculus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.898e-27
Identity = 61/144 (42.36%), Postives = 86/144 (59.72%), Query Frame = 2
Query:  137 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV*HPXXXXXXXXXXXXLKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYGATARSWTQKYAM 568
            +RI+KE + L  +P     A P   +  ++   I GP DSP+ GG F + +  P +YP   PKV F TK+ HP            LK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +K+++A+   TAR+WT+ YAM
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          
BLAST of CK932994 vs. ExPASy Swiss-Prot
Match: UBE2N_MACFA (Ubiquitin-conjugating enzyme E2 N OS=Macaca fascicularis GN=UBE2N PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.898e-27
Identity = 61/144 (42.36%), Postives = 86/144 (59.72%), Query Frame = 2
Query:  137 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV*HPXXXXXXXXXXXXLKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYGATARSWTQKYAM 568
            +RI+KE + L  +P     A P   +  ++   I GP DSP+ GG F + +  P +YP   PKV F TK+ HP            LK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +K+++A+   TAR+WT+ YAM
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKSGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          
BLAST of CK932994 vs. ExPASy Swiss-Prot
Match: UBE2N_HUMAN (Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens GN=UBE2N PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.898e-27
Identity = 61/144 (42.36%), Postives = 86/144 (59.72%), Query Frame = 2
Query:  137 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV*HPXXXXXXXXXXXXLKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYGATARSWTQKYAM 568
            +RI+KE + L  +P     A P   +  ++   I GP DSP+ GG F + +  P +YP   PKV F TK+ HP            LK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +K+++A+   TAR+WT+ YAM
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          
BLAST of CK932994 vs. ExPASy Swiss-Prot
Match: UBE2N_BOVIN (Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN=UBE2N PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.898e-27
Identity = 61/144 (42.36%), Postives = 86/144 (59.72%), Query Frame = 2
Query:  137 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV*HPXXXXXXXXXXXXLKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYGATARSWTQKYAM 568
            +RI+KE + L  +P     A P   +  ++   I GP DSP+ GG F + +  P +YP   PKV F TK+ HP            LK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +K+++A+   TAR+WT+ YAM
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          
BLAST of CK932994 vs. ExPASy Swiss-Prot
Match: UBC3_ARATH (Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis thaliana GN=UBC3 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.898e-27
Identity = 58/133 (43.61%), Postives = 77/133 (57.89%), Query Frame = 2
Query:  131 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV*HPXXXXXXXXXXXXLKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY 529
            A KR++ + K LQKDPP   S  P   ++ HW A I GP D+P+ GG F +T+HF  DYP KPP V F +++ HP            L+ QWSP   ++ VL SI SLL DPNPD P   E A ++  +K +Y
Sbjct:    5 AKKRLMWDFKRLQKDPPVGISGAPQDNNIMHWNALIFGPEDTPWDGGTFKLTLHFTEDYPNKPPIVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAVLTSIQSLLCDPNPDSPANAEAARLFSENKREY 137          
BLAST of CK932994 vs. ExPASy Swiss-Prot
Match: UBC14_SCHPO (Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccharomyces pombe GN=ubc14 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.522e-27
Identity = 57/146 (39.04%), Postives = 86/146 (58.90%), Query Frame = 2
Query:  131 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV*HPXXXXXXXXXXXXLKEQ-WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYGATARSWTQKYA 565
            +S+R+ KE  DL++ P        V +++FHW  T +GP DS YAGG F  ++ FP DYPF+PP + F T++ HP            LK+Q + P++ +  VL  I  LL +PNPDDPLV  IA  Y++D+  +   AR + +++A
Sbjct:    8 SSRRLTKEYSDLREHPIPDIRVNLVDDNLFHWACTALGPSDSVYAGGKFHFSLKFPLDYPFQPPTIEFTTRIYHPNFDSEGNVCLAILKQQVFKPSIKLRSVLEQILQLLREPNPDDPLVASIAEQYRNDRPSFDKIARDYVEQFA 153          
BLAST of CK932994 vs. ExPASy Swiss-Prot
Match: UBC13_YEAST (Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyces cerevisiae GN=UBC13 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.098e-26
Identity = 61/143 (42.66%), Postives = 83/143 (58.04%), Query Frame = 2
Query:  137 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV*HPXXXXXXXXXXXXLKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYGATARSWTQKYA 565
            KRI+KE + L  DP    +A P  +++ ++Q TI GP  SPY  G+F + ++ P DYP + PKV F TK+ HP            LK  WSPAL I  VLLSI +LL  PNP+DPL  ++A  +  ++    A AR WT+ YA
Sbjct:    6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYA 148          
The following BLAST results are available for this feature:
BLAST of CK932994 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
UBE2N_RAT8.519e-2843.06Ubiquitin-conjugating enzyme E2 N OS=Rattus norveg... [more]
UBE2N_DICDI1.113e-2743.36Probable ubiquitin-conjugating enzyme E2 N OS=Dict... [more]
UBE2N_PONAB1.898e-2742.36Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii ... [more]
UBE2N_MOUSE1.898e-2742.36Ubiquitin-conjugating enzyme E2 N OS=Mus musculus ... [more]
UBE2N_MACFA1.898e-2742.36Ubiquitin-conjugating enzyme E2 N OS=Macaca fascic... [more]
UBE2N_HUMAN1.898e-2742.36Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens ... [more]
UBE2N_BOVIN1.898e-2742.36Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN... [more]
UBC3_ARATH1.898e-2743.61Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis t... [more]
UBC14_SCHPO5.522e-2739.04Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccha... [more]
UBC13_YEAST2.098e-2642.66Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyce... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004348_H08 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIF_H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932994 ID=CK932994; Name=CK932994; organism=Citrus sinensis; type=EST; length=748bp
GGGGATCTGCTCCGACGTCGTTCCCCTTTCTCACTGCTATTGCCCTCCGA
TCTCCTTCTTCGCCGCACAAGTGTTGCAGATCCTAGGTTTGTTGTAGCTT
TAACTTTTAATAATCCGTTGAAGCATCATGGCTTCGAAGCGTATTTTGAA
GGAACTCAAGGATTTGCAGAAGGATCCTCCCACGTCTTGCAGCGCCGGTC
CGGTGGCTGAAGACATGTTCCACTGGCAAGCAACAATTATGGGCCCCCCT
GATAGTCCATATGCAGGAGGTGTATTTTTGGTTACCATTCATTTTCCTCC
GGATTATCCCTTCAAGCCCCCAAAGGTTGCTTTTAGGACCAAGGTCTAGC
ACCCAAACATCAACAGCAATGGAAGCATATNNNNTGATATCCTTAAAGAA
CAGTGGAGCCCAGCTCTTACCATTTCAAAGGTCCTGCTTTCTATCTGCTC
GTTGCTTACTGACCCAAATCCTGACGACCCGCTTGTACCGGAGATTGCTC
ACATGTACAAGTCCGACAAGGCCAAATATGGAGCCACTGCCAGGAGCTGG
ACACAGAAGTATGCCATGGGATAGTTGTTTGGATATTGCAGAAATGGAAC
TCATTTATATGAAATATGTTGTGTTTTTTTCTCCTTTTTCTTCAATCTTG
CTTCGGGAAGGGGATGTTTGGTATTTTAGTAATGAGGAAGGATGTTTGGG
GAGGAGTTGCAAGGGCAAGACGTTTTTGTTAATGTTGAATGTTTCTTG
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