CK932994

Overview
NameCK932994
Unique NameCK932994
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length748
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932994 vs. ExPASy Swiss-Prot
Match: UBC2_WHEAT (Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.740e-26
Identity = 60/149 (40.27%), Postives = 81/149 (54.36%), Query Frame = 2
Query:  122 SIMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV*HPXXXXXXXXXXXXLKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYGATAR-----SWT 553
            S  A KR++++ K LQ+DPP   S  P   ++  W A I GP D+P+ GG F +T+ F  DYP KPP V F +++ HP            L+ QWSP   ++ +L SI SLL DPNP+ P   E A MY  +K +Y    R     SWT
Sbjct:    2 STPARKRLMRDFKRLQQDPPAGISGAPHDNNITLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSENKREYNRKVREVVEQSWT 150          
BLAST of CK932994 vs. ExPASy Swiss-Prot
Match: UBC1_YEAST (Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharomyces cerevisiae GN=UBC1 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.579e-26
Identity = 60/146 (41.10%), Postives = 85/146 (58.22%), Query Frame = 2
Query:  134 SKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV*HP-XXXXXXXXXXXXLKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYGATARSWTQKYA 565
            +KRI+KE++ ++ DP    +   V+E D+ H + T +GPP +PY GG F+V I  P +YPFKPPK+ F TKV HP             LK  WSP +T+   L+S+ +LL  P P+DP   E+A  Y  D+  +  TA  WT+ YA
Sbjct:    4 AKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA 149          
BLAST of CK932994 vs. ExPASy Swiss-Prot
Match: UBC1_ARATH (Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana GN=UBC1 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.674e-26
Identity = 59/149 (39.60%), Postives = 80/149 (53.69%), Query Frame = 2
Query:  122 SIMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV*HPXXXXXXXXXXXXLKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYGATAR-----SWT 553
            S  A KR++++ K LQ+DPP   S  P   ++  W A I GP D+P+ GG F +++ F  DYP KPP V F +++ HP            L+ QWSP   ++ +L SI SLL DPNP+ P   E A MY   K +Y    R     SWT
Sbjct:    2 STPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWT 150          
BLAST of CK932994 vs. ExPASy Swiss-Prot
Match: UBC2_ARATH (Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana GN=UBC2 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.360e-25
Identity = 58/149 (38.93%), Postives = 80/149 (53.69%), Query Frame = 2
Query:  122 SIMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV*HPXXXXXXXXXXXXLKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYGATAR-----SWT 553
            S  A KR++++ K LQ+DPP   S  P   ++  W A I GP D+P+ GG F +++ F  DYP KPP V F +++ HP            L+ QWSP   ++ +L SI SLL DPNP+ P   E A M+   K +Y    R     SWT
Sbjct:    2 STPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSESKREYNRRVREVVEQSWT 150          
BLAST of CK932994 vs. ExPASy Swiss-Prot
Match: UBCD6_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=UbcD6 PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.776e-25
Identity = 55/136 (40.44%), Postives = 78/136 (57.35%), Query Frame = 2
Query:  122 SIMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV*HPXXXXXXXXXXXXLKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY 529
            S  A +R++++ K LQ+DPPT  S  P   ++  W A I GP D+P+  G F +TI F  +YP KPP V F +KV HP            L+ +WSP   +S +L SI SLL+DPNP+ P     A +YK ++ +Y
Sbjct:    2 STPARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKVFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNSPANSTAAQLYKENRREY 137          
BLAST of CK932994 vs. ExPASy Swiss-Prot
Match: UBC2_MEDSA (Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.776e-25
Identity = 58/149 (38.93%), Postives = 80/149 (53.69%), Query Frame = 2
Query:  122 SIMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV*HPXXXXXXXXXXXXLKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYGATAR-----SWT 553
            S  A KR++++ K LQ DPP   S  P   ++  W A I GP D+P+ GG F +++ F  DYP KPP V F +++ HP            L+ QWSP   ++ +L SI SLL DPNP+ P   E A M+  +K +Y    R     SWT
Sbjct:    2 STPARKRLMRDFKRLQHDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREVVEQSWT 150          
BLAST of CK932994 vs. ExPASy Swiss-Prot
Match: UBC1_SCHPO (Ubiquitin-conjugating enzyme E2 1 OS=Schizosaccharomyces pombe GN=ubc1 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.320e-25
Identity = 57/145 (39.31%), Postives = 80/145 (55.17%), Query Frame = 2
Query:  134 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV*HP-XXXXXXXXXXXXLKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYGATARSWTQKYA 565
            S+RI KEL D+Q+D         + +D+ H +    GP  +PY GG F+V I  P DYPF+PPK+ F TK+ HP             LK+QWSP  T+   L+S+ SLL  P P +P   ++A +Y  +  ++  TAR WT  YA
Sbjct:    6 SRRIAKELADVQQDKQAGIQVWTINDDISHLKGMFRGPEGTPYEGGYFVVDIEIPIDYPFRPPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTPEPSNPQDAQVAQVYLQNYQQFVRTAREWTSSYA 150          
BLAST of CK932994 vs. ExPASy Swiss-Prot
Match: UBC2_ASPFU (Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus fumigatus GN=ubc2 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.750e-25
Identity = 53/146 (36.30%), Postives = 82/146 (56.16%), Query Frame = 2
Query:  122 SIMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV*HPXXXXXXXXXXXXLKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYGATARSWTQK 559
            S  A +R++++ K +Q DPP   SA PVA+++  W A I+GP D+P+  G F + +HF   YP KPP V F +++ HP            L+ +WSP   ++ +L SI SLL DPN   P   E +++YK ++ +Y    R   +K
Sbjct:    2 STSARRRLMRDFKRMQTDPPAGVSASPVADNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYKDNRKEYIKRVRETVEK 147          
BLAST of CK932994 vs. ExPASy Swiss-Prot
Match: UBC2_EMENI (Ubiquitin-conjugating enzyme E2 2 OS=Emericella nidulans GN=uvsJ PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.504e-24
Identity = 52/146 (35.62%), Postives = 82/146 (56.16%), Query Frame = 2
Query:  122 SIMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV*HPXXXXXXXXXXXXLKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYGATARSWTQK 559
            S  A +R++++ K +Q DPP   SA PVA+++  W A I+GP D+P+  G F + +HF   YP KPP V F +++ HP            L+ +WSP   ++ +L SI SLL DPN   P   E +++Y+ ++ +Y    R   +K
Sbjct:    2 STSARRRLMRDFKRMQTDPPAGVSASPVADNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYRDNRKEYIKRVRETVEK 147          
BLAST of CK932994 vs. ExPASy Swiss-Prot
Match: UBC2_NECHA (Ubiquitin-conjugating enzyme E2 2 OS=Nectria haematococca GN=UBC2 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.714e-24
Identity = 52/146 (35.62%), Postives = 81/146 (55.48%), Query Frame = 2
Query:  122 SIMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV*HPXXXXXXXXXXXXLKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYGATARSWTQK 559
            S  A +R++++ K +Q DPP   SA PV +++  W A I+GP D+P+  G F + + F   YP KPP+V F +++ HP            L+ +WSP   ++ VL SI SLL DPN   P   E +++YK ++ +Y    R   +K
Sbjct:    2 STAARRRLMRDFKRMQTDPPAGVSASPVPDNVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISEMFHPNVYATGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRKEYTKRVRETVEK 147          
The following BLAST results are available for this feature:
BLAST of CK932994 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
UBC2_WHEAT2.740e-2640.27Ubiquitin-conjugating enzyme E2 2 OS=Triticum aest... [more]
UBC1_YEAST3.579e-2641.10Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharo... [more]
UBC1_ARATH4.674e-2639.60Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis t... [more]
UBC2_ARATH1.360e-2538.93Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis t... [more]
UBCD6_DROME1.776e-2540.44Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBC2_MEDSA1.776e-2538.93Ubiquitin-conjugating enzyme E2 2 OS=Medicago sati... [more]
UBC1_SCHPO2.320e-2539.31Ubiquitin-conjugating enzyme E2 1 OS=Schizosacchar... [more]
UBC2_ASPFU6.750e-2536.30Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus f... [more]
UBC2_EMENI1.504e-2435.62Ubiquitin-conjugating enzyme E2 2 OS=Emericella ni... [more]
UBC2_NECHA5.714e-2435.62Ubiquitin-conjugating enzyme E2 2 OS=Nectria haema... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004348_H08 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIF_H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932994 ID=CK932994; Name=CK932994; organism=Citrus sinensis; type=EST; length=748bp
GGGGATCTGCTCCGACGTCGTTCCCCTTTCTCACTGCTATTGCCCTCCGA
TCTCCTTCTTCGCCGCACAAGTGTTGCAGATCCTAGGTTTGTTGTAGCTT
TAACTTTTAATAATCCGTTGAAGCATCATGGCTTCGAAGCGTATTTTGAA
GGAACTCAAGGATTTGCAGAAGGATCCTCCCACGTCTTGCAGCGCCGGTC
CGGTGGCTGAAGACATGTTCCACTGGCAAGCAACAATTATGGGCCCCCCT
GATAGTCCATATGCAGGAGGTGTATTTTTGGTTACCATTCATTTTCCTCC
GGATTATCCCTTCAAGCCCCCAAAGGTTGCTTTTAGGACCAAGGTCTAGC
ACCCAAACATCAACAGCAATGGAAGCATATNNNNTGATATCCTTAAAGAA
CAGTGGAGCCCAGCTCTTACCATTTCAAAGGTCCTGCTTTCTATCTGCTC
GTTGCTTACTGACCCAAATCCTGACGACCCGCTTGTACCGGAGATTGCTC
ACATGTACAAGTCCGACAAGGCCAAATATGGAGCCACTGCCAGGAGCTGG
ACACAGAAGTATGCCATGGGATAGTTGTTTGGATATTGCAGAAATGGAAC
TCATTTATATGAAATATGTTGTGTTTTTTTCTCCTTTTTCTTCAATCTTG
CTTCGGGAAGGGGATGTTTGGTATTTTAGTAATGAGGAAGGATGTTTGGG
GAGGAGTTGCAAGGGCAAGACGTTTTTGTTAATGTTGAATGTTTCTTG
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