CK932999

Overview
NameCK932999
Unique NameCK932999
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7950 contig Csv1_Contig7950:79..879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932999 vs. ExPASy Swiss-Prot
Match: TTCA_ANADF (tRNA 2-thiocytidine biosynthesis protein ttcA OS=Anaeromyxobacter sp. (strain Fw109-5) GN=ttcA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.533e-12
Identity = 50/139 (35.97%), Postives = 71/139 (51.08%), Query Frame = 2
Query:  389 QLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVK--VIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNXL 799
            +L   G+RI +  SGGKDS  L  VL  L  R     DL  +++D+G  GY     + V+R+    G+P +++ Y D Y      IV+  V   K  C  C   RR  L   A+ +   KIA GH+ DD+ ET+LL+ L
Sbjct:   36 ELIGDGDRIMVAVSGGKDSYTLLHVLMRLRERAPIDFDLVAVNLDQGQPGY---PAEIVERHFQAVGVPHRML-YADTY-----SIVRRLVPEGKTTCPVCSRLRRGVLYNAAAEMGCTKIALGHHRDDLVETLLLSAL 165          
BLAST of CK932999 vs. ExPASy Swiss-Prot
Match: TTCA_BURVG (tRNA 2-thiocytidine biosynthesis protein ttcA OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=ttcA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.245e-11
Identity = 57/180 (31.67%), Postives = 85/180 (47.22%), Query Frame = 2
Query:  260 GRLCSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVK--VIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLN 793
            GR   T  ++K A +  K  ++I R+         + Q I    + +AG+++ +  SGGKDS  +  VL  L  R     D+  +++D+   G+ +  L        Q G+P  I + +D Y      IVK  V   K  C+ C   RR  L R A  L   KIA GH+ DDI +T+LLN
Sbjct:   24 GRRALTRREQKEAYENNKLFKRIARQ---------VGQAIGDYNMIEAGDKVMVCLSGGKDSYAMLDVLLRLRERAPIDFDIVAVNLDQKQPGFPEHVLPEYLT---QIGVPFHIEN-QDTYS-----IVKRLVPEGKTTCSLCSRLRRGILYRVAGELGATKIALGHHRDDILQTLLLN 185          
BLAST of CK932999 vs. ExPASy Swiss-Prot
Match: TTCA_BURCH (tRNA 2-thiocytidine biosynthesis protein ttcA OS=Burkholderia cenocepacia (strain HI2424) GN=ttcA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.774e-11
Identity = 56/180 (31.11%), Postives = 85/180 (47.22%), Query Frame = 2
Query:  260 GRLCSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVK--VIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLN 793
            GR   T  ++K A +  K  ++I R+         + Q I    + + G+++ +  SGGKDS  +  VL  L  R     D+  +++D+   G+ +  L    +   Q G+P  I + +D Y      IVK  V   K  C+ C   RR  L R A  L   KIA GH+ DDI +T+LLN
Sbjct:   24 GRPALTRREQKEAYENNKLFKRIVRQ---------VGQAIGDYNMIEQGDKVMVCLSGGKDSYAMLDVLLRLRERAPIDFDIVAVNLDQKQPGFPEHVLPEYLK---QVGVPFHIEN-QDTYS-----IVKRLVPEGKTTCSLCSRLRRGILYRVAGELGATKIALGHHRDDIVQTLLLN 185          
BLAST of CK932999 vs. ExPASy Swiss-Prot
Match: TTCA_BURCC (tRNA 2-thiocytidine biosynthesis protein ttcA OS=Burkholderia cenocepacia (strain MC0-3) GN=ttcA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.774e-11
Identity = 56/180 (31.11%), Postives = 85/180 (47.22%), Query Frame = 2
Query:  260 GRLCSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVK--VIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLN 793
            GR   T  ++K A +  K  ++I R+         + Q I    + + G+++ +  SGGKDS  +  VL  L  R     D+  +++D+   G+ +  L    +   Q G+P  I + +D Y      IVK  V   K  C+ C   RR  L R A  L   KIA GH+ DDI +T+LLN
Sbjct:   24 GRPALTRREQKEAYENNKLFKRIVRQ---------VGQAIGDYNMIEQGDKVMVCLSGGKDSYAMLDVLLRLRERAPIDFDIVAVNLDQKQPGFPEHVLPEYLK---QVGVPFHIEN-QDTYS-----IVKRLVPEGKTTCSLCSRLRRGILYRVAGELGATKIALGHHRDDIVQTLLLN 185          
BLAST of CK932999 vs. ExPASy Swiss-Prot
Match: TTCA_BURCA (tRNA 2-thiocytidine biosynthesis protein ttcA OS=Burkholderia cenocepacia (strain AU 1054) GN=ttcA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.774e-11
Identity = 56/180 (31.11%), Postives = 85/180 (47.22%), Query Frame = 2
Query:  260 GRLCSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVK--VIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLN 793
            GR   T  ++K A +  K  ++I R+         + Q I    + + G+++ +  SGGKDS  +  VL  L  R     D+  +++D+   G+ +  L    +   Q G+P  I + +D Y      IVK  V   K  C+ C   RR  L R A  L   KIA GH+ DDI +T+LLN
Sbjct:   19 GRPALTRREQKEAYENNKLFKRIVRQ---------VGQAIGDYNMIEQGDKVMVCLSGGKDSYAMLDVLLRLRERAPIDFDIVAVNLDQKQPGFPEHVLPEYLK---QVGVPFHIEN-QDTYS-----IVKRLVPEGKTTCSLCSRLRRGILYRVAGELGATKIALGHHRDDIVQTLLLN 180          
BLAST of CK932999 vs. ExPASy Swiss-Prot
Match: TTCA_GEOSL (tRNA 2-thiocytidine biosynthesis protein ttcA OS=Geobacter sulfurreducens GN=ttcA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.622e-11
Identity = 46/150 (30.67%), Postives = 72/150 (48.00%), Query Frame = 2
Query:  344 YEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLN 793
            Y+  +  + + +    L + G+RIA+  SGGKDS  L  +L  L RR     +L  ++ID G  G+R D + +  R E  +   L+   + D+         K     + C+ C   +R  L   A  L  +K+A GH+ DD  ET+LLN
Sbjct:   34 YKKIKNAVGRAVADFGLIRDGDRIAVAVSGGKDSYTLLHILEGLRRRAPVKYELVAVTIDSGYPGFRSDVIASYLR-EQGFAHHLETTDHYDIIR------EKRRPGSSYCSICARLKRGVLYTLAQKLGCNKLALGHHLDDFVETLLLN 176          
BLAST of CK932999 vs. ExPASy Swiss-Prot
Match: TTCA_BURS3 (tRNA 2-thiocytidine biosynthesis protein ttcA OS=Burkholderia sp. (strain 383) GN=ttcA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.731e-11
Identity = 56/180 (31.11%), Postives = 85/180 (47.22%), Query Frame = 2
Query:  260 GRLCSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVK--VIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLN 793
            GR   T  ++K A +  K  ++I R+         + Q I    + + G+++ +  SGGKDS  +  VL  L  R     D+  +++D+   G+ +  L    +   Q G+P  I + +D Y      IVK  V   K  C+ C   RR  L R A  L   KIA GH+ DDI +T+LLN
Sbjct:   24 GRPALTRREQKDAYENNKLFKRIVRQ---------VGQAIGDFNMIEQGDKVMVCLSGGKDSYAMLDVLLRLRERAPIDFDIVAVNLDQKQPGFPEHVLPEYLK---QVGVPFHIEN-QDTYS-----IVKRLVPEGKTTCSLCSRLRRGILYRVAGELGATKIALGHHRDDIVQTLLLN 185          
BLAST of CK932999 vs. ExPASy Swiss-Prot
Match: TTCA1_FRAP2 (tRNA 2-thiocytidine biosynthesis protein ttcA 1 OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=ttcA1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.731e-11
Identity = 48/145 (33.10%), Postives = 76/145 (52.41%), Query Frame = 2
Query:  365 IHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNXL 799
            I + I   +L + G+++ +  SGGKDS  L  VL  L     Y +DL + ++D+   G+ D  L+    N    G+  +I + K+ YG  +D   KV   K  C+ C   RR  + R A   K+DKI  GH+ DD+ E++L++ L
Sbjct:   17 ITKAIADYKLIEKGDKVMLCLSGGKDSFGLLKVLHGLIEDKTYDIDLHVYTLDQSQPGWDDSQLRKYLDN---LGVSYEIET-KNTYGVVID---KVPEGKTYCSLCSRLRRGNIYRYAKEHKMDKIILGHHRDDLIESLLMSIL 154          
BLAST of CK932999 vs. ExPASy Swiss-Prot
Match: TTCA_BURCM (tRNA 2-thiocytidine biosynthesis protein ttcA OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=ttcA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.179e-11
Identity = 56/180 (31.11%), Postives = 84/180 (46.67%), Query Frame = 2
Query:  260 GRLCSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVK--VIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLN 793
            GR   T  ++K A +  K  ++I R+         + Q I    + + G+++ +  SGGKDS  +  VL  L  R     D+  +++D+   G+ +  L        Q G+P  I + +D Y      IVK  V   K  C+ C   RR  L R A  L   KIA GH+ DDI +T+LLN
Sbjct:   27 GRRALTRREQKEAYENNKLFKRIVRQ---------VGQAIGDYNMIEQGDKVMVCLSGGKDSYAMLDVLLRLRERAPIDFDIVAVNLDQKQPGFPEHVLPEYLT---QIGVPFHIEN-QDTYS-----IVKRLVPEGKTTCSLCSRLRRGILYRVAGELGATKIALGHHRDDILQTLLLN 188          
BLAST of CK932999 vs. ExPASy Swiss-Prot
Match: TTCA_BURA4 (tRNA 2-thiocytidine biosynthesis protein ttcA OS=Burkholderia ambifaria (strain MC40-6) GN=ttcA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.179e-11
Identity = 56/180 (31.11%), Postives = 84/180 (46.67%), Query Frame = 2
Query:  260 GRLCSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVK--VIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLN 793
            GR   T  ++K A +  K  ++I R+         + Q I    + + G+++ +  SGGKDS  +  VL  L  R     D+  +++D+   G+ +  L        Q G+P  I + +D Y      IVK  V   K  C+ C   RR  L R A  L   KIA GH+ DDI +T+LLN
Sbjct:   27 GRRALTRREQKEAYENNKLFKRIVRQ---------VGQAIGDYNMIEQGDKVMVCLSGGKDSYAMLDVLLRLRERAPIDFDIVAVNLDQKQPGFPEHVLPEYLT---QIGVPFHIEN-QDTYS-----IVKRLVPEGKTTCSLCSRLRRGILYRVAGELGATKIALGHHRDDILQTLLLN 188          
The following BLAST results are available for this feature:
BLAST of CK932999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
TTCA_ANADF9.533e-1235.97tRNA 2-thiocytidine biosynthesis protein ttcA OS=A... [more]
TTCA_BURVG1.245e-1131.67tRNA 2-thiocytidine biosynthesis protein ttcA OS=B... [more]
TTCA_BURCH2.774e-1131.11tRNA 2-thiocytidine biosynthesis protein ttcA OS=B... [more]
TTCA_BURCC2.774e-1131.11tRNA 2-thiocytidine biosynthesis protein ttcA OS=B... [more]
TTCA_BURCA2.774e-1131.11tRNA 2-thiocytidine biosynthesis protein ttcA OS=B... [more]
TTCA_GEOSL3.622e-1130.67tRNA 2-thiocytidine biosynthesis protein ttcA OS=G... [more]
TTCA_BURS34.731e-1131.11tRNA 2-thiocytidine biosynthesis protein ttcA OS=B... [more]
TTCA1_FRAP24.731e-1133.10tRNA 2-thiocytidine biosynthesis protein ttcA 1 OS... [more]
TTCA_BURCM6.179e-1131.11tRNA 2-thiocytidine biosynthesis protein ttcA OS=B... [more]
TTCA_BURA46.179e-1131.11tRNA 2-thiocytidine biosynthesis protein ttcA OS=B... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004349_A03 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932999 ID=CK932999; Name=CK932999; organism=Citrus sinensis; type=EST; length=801bp
GGGGAATAAAAGAAGTTTAGGGAATGAGAAGGTCCAGAGACTTTGGAGGG
GTGAGGGTGCCGGTCGGACCGCTGCTTTCATAACAGTTCCATTCCGAGAA
GCTGTTGCCGCACTGCAAAAGCAAACTCAAATCTTCAATTTTTCCCTCAT
AACCCAAACTTGATCTCTTGTAAGTCTGTTAGCTTGTCTCTTCATAGTTT
ACTTAGTGGGCCATTAACGGTCAATGGAGGTCGCCGAGTCGAAGTCCAAG
AAGGCCGGTGGCCGCCTTTGTTCCACCTGTAACCAGAGAAAGGCTGCCCT
CAAACGACCTAAAACCCTAGAACAGATATGTAGGGAGTGTTTCTATGAGG
TATTTGAGGAGGAGATCCACCAAGTCATTGTGGGAAATCAGCTATTCAAG
GCTGGTGAGCGTATTGCCATCGGCGCCTCTGGTGGAAAAGATTCCACTGT
CCTTGCTTTTGTGTTGTCAGAGCTGAACCGGCGTCACAACTATGGCCTTG
ATCTTTTCCTCCTATCAATTGATGAAGGCATTTCAGGATACAGGGATGAT
TCACTTCAAACTGTCAAAAGAAATGAAATTCAGTATGGTCTGCCACTGAA
GATTGTTTCATACAAGGATTTATATGGATGGACAATGGATGAGATAGTGA
AGGTGATCGGTTTAAAGAATAATTGCACCTTTTGTGGTGTTTTTCGTCGC
CAGGCCCTTGATCGAGGTGCTTCATTGTTGAAAGTAGACAAGATTGCAAC
GGGACATAATGCAGATGATATTGCAGAAACTGTTCTATTGAACNNNTTGC
G
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