CK932999
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK932999 vs. ExPASy Swiss-Prot
Match: TTCA_ANADF (tRNA 2-thiocytidine biosynthesis protein ttcA OS=Anaeromyxobacter sp. (strain Fw109-5) GN=ttcA PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 9.533e-12 Identity = 50/139 (35.97%), Postives = 71/139 (51.08%), Query Frame = 2 Query: 389 QLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVK--VIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNXL 799 +L G+RI + SGGKDS L VL L R DL +++D+G GY + V+R+ G+P +++ Y D Y IV+ V K C C RR L A+ + KIA GH+ DD+ ET+LL+ L Sbjct: 36 ELIGDGDRIMVAVSGGKDSYTLLHVLMRLRERAPIDFDLVAVNLDQGQPGY---PAEIVERHFQAVGVPHRML-YADTY-----SIVRRLVPEGKTTCPVCSRLRRGVLYNAAAEMGCTKIALGHHRDDLVETLLLSAL 165
BLAST of CK932999 vs. ExPASy Swiss-Prot
Match: TTCA_BURVG (tRNA 2-thiocytidine biosynthesis protein ttcA OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=ttcA PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.245e-11 Identity = 57/180 (31.67%), Postives = 85/180 (47.22%), Query Frame = 2 Query: 260 GRLCSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVK--VIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLN 793 GR T ++K A + K ++I R+ + Q I + +AG+++ + SGGKDS + VL L R D+ +++D+ G+ + L Q G+P I + +D Y IVK V K C+ C RR L R A L KIA GH+ DDI +T+LLN Sbjct: 24 GRRALTRREQKEAYENNKLFKRIARQ---------VGQAIGDYNMIEAGDKVMVCLSGGKDSYAMLDVLLRLRERAPIDFDIVAVNLDQKQPGFPEHVLPEYLT---QIGVPFHIEN-QDTYS-----IVKRLVPEGKTTCSLCSRLRRGILYRVAGELGATKIALGHHRDDILQTLLLN 185
BLAST of CK932999 vs. ExPASy Swiss-Prot
Match: TTCA_BURCH (tRNA 2-thiocytidine biosynthesis protein ttcA OS=Burkholderia cenocepacia (strain HI2424) GN=ttcA PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.774e-11 Identity = 56/180 (31.11%), Postives = 85/180 (47.22%), Query Frame = 2 Query: 260 GRLCSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVK--VIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLN 793 GR T ++K A + K ++I R+ + Q I + + G+++ + SGGKDS + VL L R D+ +++D+ G+ + L + Q G+P I + +D Y IVK V K C+ C RR L R A L KIA GH+ DDI +T+LLN Sbjct: 24 GRPALTRREQKEAYENNKLFKRIVRQ---------VGQAIGDYNMIEQGDKVMVCLSGGKDSYAMLDVLLRLRERAPIDFDIVAVNLDQKQPGFPEHVLPEYLK---QVGVPFHIEN-QDTYS-----IVKRLVPEGKTTCSLCSRLRRGILYRVAGELGATKIALGHHRDDIVQTLLLN 185
BLAST of CK932999 vs. ExPASy Swiss-Prot
Match: TTCA_BURCC (tRNA 2-thiocytidine biosynthesis protein ttcA OS=Burkholderia cenocepacia (strain MC0-3) GN=ttcA PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.774e-11 Identity = 56/180 (31.11%), Postives = 85/180 (47.22%), Query Frame = 2 Query: 260 GRLCSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVK--VIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLN 793 GR T ++K A + K ++I R+ + Q I + + G+++ + SGGKDS + VL L R D+ +++D+ G+ + L + Q G+P I + +D Y IVK V K C+ C RR L R A L KIA GH+ DDI +T+LLN Sbjct: 24 GRPALTRREQKEAYENNKLFKRIVRQ---------VGQAIGDYNMIEQGDKVMVCLSGGKDSYAMLDVLLRLRERAPIDFDIVAVNLDQKQPGFPEHVLPEYLK---QVGVPFHIEN-QDTYS-----IVKRLVPEGKTTCSLCSRLRRGILYRVAGELGATKIALGHHRDDIVQTLLLN 185
BLAST of CK932999 vs. ExPASy Swiss-Prot
Match: TTCA_BURCA (tRNA 2-thiocytidine biosynthesis protein ttcA OS=Burkholderia cenocepacia (strain AU 1054) GN=ttcA PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.774e-11 Identity = 56/180 (31.11%), Postives = 85/180 (47.22%), Query Frame = 2 Query: 260 GRLCSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVK--VIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLN 793 GR T ++K A + K ++I R+ + Q I + + G+++ + SGGKDS + VL L R D+ +++D+ G+ + L + Q G+P I + +D Y IVK V K C+ C RR L R A L KIA GH+ DDI +T+LLN Sbjct: 19 GRPALTRREQKEAYENNKLFKRIVRQ---------VGQAIGDYNMIEQGDKVMVCLSGGKDSYAMLDVLLRLRERAPIDFDIVAVNLDQKQPGFPEHVLPEYLK---QVGVPFHIEN-QDTYS-----IVKRLVPEGKTTCSLCSRLRRGILYRVAGELGATKIALGHHRDDIVQTLLLN 180
BLAST of CK932999 vs. ExPASy Swiss-Prot
Match: TTCA_GEOSL (tRNA 2-thiocytidine biosynthesis protein ttcA OS=Geobacter sulfurreducens GN=ttcA PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.622e-11 Identity = 46/150 (30.67%), Postives = 72/150 (48.00%), Query Frame = 2 Query: 344 YEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLN 793 Y+ + + + + L + G+RIA+ SGGKDS L +L L RR +L ++ID G G+R D + + R E + L+ + D+ K + C+ C +R L A L +K+A GH+ DD ET+LLN Sbjct: 34 YKKIKNAVGRAVADFGLIRDGDRIAVAVSGGKDSYTLLHILEGLRRRAPVKYELVAVTIDSGYPGFRSDVIASYLR-EQGFAHHLETTDHYDIIR------EKRRPGSSYCSICARLKRGVLYTLAQKLGCNKLALGHHLDDFVETLLLN 176
BLAST of CK932999 vs. ExPASy Swiss-Prot
Match: TTCA_BURS3 (tRNA 2-thiocytidine biosynthesis protein ttcA OS=Burkholderia sp. (strain 383) GN=ttcA PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.731e-11 Identity = 56/180 (31.11%), Postives = 85/180 (47.22%), Query Frame = 2 Query: 260 GRLCSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVK--VIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLN 793 GR T ++K A + K ++I R+ + Q I + + G+++ + SGGKDS + VL L R D+ +++D+ G+ + L + Q G+P I + +D Y IVK V K C+ C RR L R A L KIA GH+ DDI +T+LLN Sbjct: 24 GRPALTRREQKDAYENNKLFKRIVRQ---------VGQAIGDFNMIEQGDKVMVCLSGGKDSYAMLDVLLRLRERAPIDFDIVAVNLDQKQPGFPEHVLPEYLK---QVGVPFHIEN-QDTYS-----IVKRLVPEGKTTCSLCSRLRRGILYRVAGELGATKIALGHHRDDIVQTLLLN 185
BLAST of CK932999 vs. ExPASy Swiss-Prot
Match: TTCA1_FRAP2 (tRNA 2-thiocytidine biosynthesis protein ttcA 1 OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=ttcA1 PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.731e-11 Identity = 48/145 (33.10%), Postives = 76/145 (52.41%), Query Frame = 2 Query: 365 IHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNXL 799 I + I +L + G+++ + SGGKDS L VL L Y +DL + ++D+ G+ D L+ N G+ +I + K+ YG +D KV K C+ C RR + R A K+DKI GH+ DD+ E++L++ L Sbjct: 17 ITKAIADYKLIEKGDKVMLCLSGGKDSFGLLKVLHGLIEDKTYDIDLHVYTLDQSQPGWDDSQLRKYLDN---LGVSYEIET-KNTYGVVID---KVPEGKTYCSLCSRLRRGNIYRYAKEHKMDKIILGHHRDDLIESLLMSIL 154
BLAST of CK932999 vs. ExPASy Swiss-Prot
Match: TTCA_BURCM (tRNA 2-thiocytidine biosynthesis protein ttcA OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=ttcA PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 6.179e-11 Identity = 56/180 (31.11%), Postives = 84/180 (46.67%), Query Frame = 2 Query: 260 GRLCSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVK--VIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLN 793 GR T ++K A + K ++I R+ + Q I + + G+++ + SGGKDS + VL L R D+ +++D+ G+ + L Q G+P I + +D Y IVK V K C+ C RR L R A L KIA GH+ DDI +T+LLN Sbjct: 27 GRRALTRREQKEAYENNKLFKRIVRQ---------VGQAIGDYNMIEQGDKVMVCLSGGKDSYAMLDVLLRLRERAPIDFDIVAVNLDQKQPGFPEHVLPEYLT---QIGVPFHIEN-QDTYS-----IVKRLVPEGKTTCSLCSRLRRGILYRVAGELGATKIALGHHRDDILQTLLLN 188
BLAST of CK932999 vs. ExPASy Swiss-Prot
Match: TTCA_BURA4 (tRNA 2-thiocytidine biosynthesis protein ttcA OS=Burkholderia ambifaria (strain MC40-6) GN=ttcA PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 6.179e-11 Identity = 56/180 (31.11%), Postives = 84/180 (46.67%), Query Frame = 2 Query: 260 GRLCSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVK--VIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLN 793 GR T ++K A + K ++I R+ + Q I + + G+++ + SGGKDS + VL L R D+ +++D+ G+ + L Q G+P I + +D Y IVK V K C+ C RR L R A L KIA GH+ DDI +T+LLN Sbjct: 27 GRRALTRREQKEAYENNKLFKRIVRQ---------VGQAIGDYNMIEQGDKVMVCLSGGKDSYAMLDVLLRLRERAPIDFDIVAVNLDQKQPGFPEHVLPEYLT---QIGVPFHIEN-QDTYS-----IVKRLVPEGKTTCSLCSRLRRGILYRVAGELGATKIALGHHRDDILQTLLLN 188 The following BLAST results are available for this feature:
BLAST of CK932999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 61
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CK932999 ID=CK932999; Name=CK932999; organism=Citrus sinensis; type=EST; length=801bpback to top |