CK933006

Overview
NameCK933006
Unique NameCK933006
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933006_ssr446 microsatellite CK933006_ssr446:446..457. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6967 contig Csv1_Contig6967:72..649. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933006 vs. ExPASy Swiss-Prot
Match: FKBP3_KLULA (FK506-binding protein 3 OS=Kluyveromyces lactis GN=FPR3 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.158e-11
Identity = 47/118 (39.83%), Postives = 59/118 (50.00%), Query Frame = 3
Query:   21 PKTEK-EMGIXXXILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQV 371
            PKT+  E GI       G G     G KV +   G  KNG +  K  S K     PF F +G+G VIKGWD GV GM VG   R+     YAYG    P  GI  NS L F+++++ +
Sbjct:  307 PKTKVLEGGIIIEDRVTGKGKACKKGSKVGMRYIGKLKNGKVFDKNTSGK-----PFVFNLGRGEVIKGWDIGVAGMAVGGERRIVIPAPYAYGKQALP--GIPANSELTFDVKLVSL 417          
BLAST of CK933006 vs. ExPASy Swiss-Prot
Match: FKBP3_HUMAN (FK506-binding protein 3 OS=Homo sapiens GN=FKBP3 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.158e-11
Identity = 36/93 (38.71%), Postives = 56/93 (60.22%), Query Frame = 3
Query:  108 VHC--TGYGKNG---DLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQV 371
            VHC  TG  ++G   D + +  + K    +P +F++G G VI+GWDE ++ M  GE ARL   P++AYG  G P   I PN+ L FE++++ +
Sbjct:  131 VHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNAKLTFEVELVDI 223          
BLAST of CK933006 vs. ExPASy Swiss-Prot
Match: FKBP3_BOVIN (FK506-binding protein 3 OS=Bos taurus GN=FKBP3 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.158e-11
Identity = 37/93 (39.78%), Postives = 56/93 (60.22%), Query Frame = 3
Query:  108 VHC--TGYGKNG---DLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQV 371
            VHC  TG  ++G   D + +  S K    +P +F++G G VI+GWDE ++ M  GE ARL   P++AYG  G P   I PN+ L FE++++ +
Sbjct:  131 VHCWYTGTLQDGTVFDTNIQTSSKKKKNAKPLSFKVGIGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNAKLIFEVELVDI 223          
BLAST of CK933006 vs. ExPASy Swiss-Prot
Match: FKBP3_MOUSE (FK506-binding protein 3 OS=Mus musculus GN=Fkbp3 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.513e-11
Identity = 37/93 (39.78%), Postives = 55/93 (59.14%), Query Frame = 3
Query:  108 VHC--TGYGKNG---DLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQV 371
            VHC  TG   +G   D + +  S K    +P +F++G G VI+GWDE ++ M  GE ARL   P++AYG  G P   I PN+ L FE++++ +
Sbjct:  131 VHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELVDI 223          
BLAST of CK933006 vs. ExPASy Swiss-Prot
Match: FKBP4_SCHPO (FK506-binding protein 39 kDa OS=Schizosaccharomyces pombe GN=fkbp39 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.581e-11
Identity = 45/122 (36.89%), Postives = 65/122 (53.28%), Query Frame = 3
Query:    6 PESPIPKTEKEMGIXXXILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQV 371
            P SP  +T K  G+    +  G+G     G+KV +   G  +NG +  K  +TK    +PF F +G+G VI+GWD GV GMQ G   ++      AYG    P  GI  NS L FE+++++V
Sbjct:  247 PSSPKTRTLKG-GVVVTDVKTGSGASATNGKKVEMRYIGKLENGKVFDK--NTKG---KPFAFILGRGEVIRGWDVGVAGMQEGGERKITIPAPMAYGNQSIP--GIPKNSTLVFEVKLVRV 360          
BLAST of CK933006 vs. ExPASy Swiss-Prot
Match: FKBP4_NEUCR (FK506-binding protein 4 OS=Neurospora crassa GN=fpr-4 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.581e-11
Identity = 41/101 (40.59%), Postives = 56/101 (55.45%), Query Frame = 3
Query:   69 GNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQV 371
            G G     G +V +   G  +NG    K + +   G  PF+F++GKG VIKGWD GV GM VG   RL      AYG+   P  GI PNS L F++++L++
Sbjct:  373 GTGRAAKNGDRVGMRYIGKLQNG----KVFDSNKKGA-PFSFKLGKGEVIKGWDIGVAGMAVGGERRLTIPAHLAYGSRALP--GIPPNSTLIFDVKLLEI 466          
BLAST of CK933006 vs. ExPASy Swiss-Prot
Match: FKBP4_CANGA (FK506-binding protein 4 OS=Candida glabrata GN=FPR4 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.581e-11
Identity = 41/101 (40.59%), Postives = 54/101 (53.47%), Query Frame = 3
Query:   69 GNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQV 371
            G GPK   G KV +   G  KNG +  K  S K     PF F++ +G VIKGWD GV GM +G   R+     YAYG    P  GI  NS L F+++++ +
Sbjct:  304 GEGPKAKKGSKVGMRYIGKLKNGKVFDKNTSGK-----PFYFKLHRGEVIKGWDIGVTGMAIGGERRIVIPAPYAYGKQTLP--GIPANSELTFDVKLVSL 397          
BLAST of CK933006 vs. ExPASy Swiss-Prot
Match: FKBP_NEIMC (FK506-binding protein OS=Neisseria meningitidis serogroup C GN=fbp PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.402e-11
Identity = 41/99 (41.41%), Postives = 60/99 (60.61%), Query Frame = 3
Query:   75 GPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQV 371
            G + V G+++TVH TG+ ++G    KF S+ D  +QP T  +G G VIKGWDEG  GM+ G   +L    +  YGA G     I P++ L FE+++L+V
Sbjct:   14 GKEAVKGKEITVHYTGWLEDGT---KFDSSLDR-RQPLTITLGVGQVIKGWDEGFGGMKEGGKRKLTIPSEMGYGAHG-AGGVIPPHATLIFEVELLKV 107          
BLAST of CK933006 vs. ExPASy Swiss-Prot
Match: FKBP3_ASHGO (FK506-binding protein 3 OS=Ashbya gossypii GN=FPR3 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.749e-11
Identity = 45/118 (38.14%), Postives = 60/118 (50.85%), Query Frame = 3
Query:   21 PKTE-KEMGIXXXILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQV 371
            PKT+  E G+       G+G     G +V +   G  KNG +  K  S K     PF F++G G VIKGWD GV GM VG   R+     YAYG    P  GI  NS L F+++++ +
Sbjct:  307 PKTKILEGGVVIEDRVVGSGKAAKKGARVGMRYIGKLKNGKVFDKNTSGK-----PFVFKLGHGEVIKGWDIGVAGMAVGGERRIVIPAAYAYGKQALP--GIPANSELTFDVKLVSL 417          
BLAST of CK933006 vs. ExPASy Swiss-Prot
Match: FKB2B_RHIOR (FK506-binding protein 2B OS=Rhizopus oryzae GN=FKBP3 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.749e-11
Identity = 42/118 (35.59%), Postives = 66/118 (55.93%), Query Frame = 3
Query:   21 PKTEKEMGIXXXILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQP-NSVLDFEIQVLQV 371
            P T+ ++G+   I       K  +G ++++H TG     D  +KF S+ D  + PF F +G G VI+GWD+G++GM VGE  RL   P   YG  G    G+ P  + L FE+++L++
Sbjct:   23 PPTQLQVGVKKRIPASECTRKSHSGDELSMHYTG--TLFDTGEKFDSSLDRNE-PFVFTLGAGQVIQGWDQGLLGMCVGEKRRLVIPPHLGYGERG--AGGVIPGGATLVFEVELLEI 135          
The following BLAST results are available for this feature:
BLAST of CK933006 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
FKBP3_KLULA1.158e-1139.83FK506-binding protein 3 OS=Kluyveromyces lactis GN... [more]
FKBP3_HUMAN1.158e-1138.71FK506-binding protein 3 OS=Homo sapiens GN=FKBP3 P... [more]
FKBP3_BOVIN1.158e-1139.78FK506-binding protein 3 OS=Bos taurus GN=FKBP3 PE=... [more]
FKBP3_MOUSE1.513e-1139.78FK506-binding protein 3 OS=Mus musculus GN=Fkbp3 P... [more]
FKBP4_SCHPO2.581e-1136.89FK506-binding protein 39 kDa OS=Schizosaccharomyce... [more]
FKBP4_NEUCR2.581e-1140.59FK506-binding protein 4 OS=Neurospora crassa GN=fp... [more]
FKBP4_CANGA2.581e-1140.59FK506-binding protein 4 OS=Candida glabrata GN=FPR... [more]
FKBP_NEIMC4.402e-1141.41FK506-binding protein OS=Neisseria meningitidis se... [more]
FKBP3_ASHGO5.749e-1138.14FK506-binding protein 3 OS=Ashbya gossypii GN=FPR3... [more]
FKB2B_RHIOR5.749e-1135.59FK506-binding protein 2B OS=Rhizopus oryzae GN=FKB... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004348_H02 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIF_H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933006 ID=CK933006; Name=CK933006; organism=Citrus sinensis; type=EST; length=579bp
GGGGACCAGAAAGTCCAATCCCTAAGACAGAGAAGGAGATGGGAATAGNN
NNGNAAATTTTGACCCCAGGAAACGGTCCTAAGCCGGTTGCTGGTCAGAA
GGTTACCGTCCACTGCACTGGCTACGGGAAAAATGGCGATCTGTCTCAGA
AGTTCTGGAGCACAAAGGACCCTGGGCAGCAGCCTTTTACATTCCAGATT
GGCAAAGGCTCTGTTATAAAAGGATGGGATGAAGGTGTGATGGGAATGCA
GGTGGGAGAAGTTGCTCGTCTGCGGTGCTCCCCAGATTACGCCTATGGTG
CTGGTGGATTTCCACAATGGGGGATTCAACCTAACTCAGTCCTGGATTTT
GAGATACAAGTCCTGCAGGTAGGATAAGCACCTCATAAAGGCAGAAAACC
ATCTAGAAAATTCTATGGTTTTAAATAAATTGTCTTACCATGGACATGTA
TGTATGTTATCCTGAACTCCTGATAAATATCAGATGGCTATGATGGAACG
ATCTTTTTTTTCGACGTTTTAATAACACTACATGTGCAACTTTTTAGCAC
AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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