CK933007

Overview
NameCK933007
Unique NameCK933007
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length809
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933007_ssr314 microsatellite CK933007_ssr314:314..328. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1513 contig Csv1_Contig1513:1..809. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933007 vs. ExPASy Swiss-Prot
Match: PUR7_BACFN (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=purC PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.495e-23
Identity = 57/129 (44.19%), Postives = 77/129 (59.69%), Query Frame = 1
Query:  424 TNLHLTVPGLKSKTRGKVRDIYD-GGDYLVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHITPNAVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGL 804
            T      PG KS   GKVRD+Y+  G+ LV+V TDR SAFD +L   IP+KGQ+LN+ +  + D T  I PN  +++PD  VT+   C   PVE +VRG++ GS     W  Y  G+R  CG  LP+G+
Sbjct:    5 TKTDFNFPGQKSVYHGKVRDVYNINGEQLVMVATDRISAFDVVLPEGIPYKGQMLNQIAAKFLDATTDICPNWKLATPDPMVTVGVLCEGFPVEMIVRGYLCGSA----WRAYKNGVREICGVKLPEGM 129          
BLAST of CK933007 vs. ExPASy Swiss-Prot
Match: PUR7_CYTH3 (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=purC PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.334e-20
Identity = 58/133 (43.61%), Postives = 76/133 (57.14%), Query Frame = 1
Query:  409 NRLSETNLHLTVPGLKSKTRGKVRDIYDGGDYLVLVTTDRQSAFDRILA-SIPFKGQVLNETSLWWFDQTRHITPNAVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGL 804
            N + ET   L  PG     +GKVRD+Y   D LV+V +DR SAFD +L  +IPFKGQVLN+ +     QT  + PN ++S PD +V+I  KC    VE V+RG++ G         Y  G R  CG ALP+ L
Sbjct:    2 NAIKETRFEL--PGQTGFYKGKVRDVYYVADKLVVVASDRISAFDVVLPRAIPFKGQVLNQIAAKMLAQTADVVPNWILSVPDPSVSIGIKCEPFKVEMVIRGYLAGHAARE----YKAGKRTLCGVALPEEL 128          
BLAST of CK933007 vs. ExPASy Swiss-Prot
Match: PUR7_AZOPC (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=purC PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.334e-20
Identity = 53/114 (46.49%), Postives = 70/114 (61.40%), Query Frame = 1
Query:  469 GKVRDIYD-GGDYLVLVTTDRQSAFDRILA-SIPFKGQVLNETSLWWFDQTRHITPNAVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGL 804
            GKVRD+Y  G D LV++ TDR SAFD +L+  IP+KGQVLN+ +  + D T  I PN  ++ PD  VTI   C    VE V+RG++TGS     W  Y +G R  C   LP+G+
Sbjct:   20 GKVRDVYTVGSDMLVIIATDRISAFDVVLSRGIPYKGQVLNQIAAKFLDSTSDILPNWKLAEPDPMVTIGLLCEPFKVEMVIRGYLTGSA----WRKYKEGERTLCAVTLPEGM 129          
BLAST of CK933007 vs. ExPASy Swiss-Prot
Match: PUR7_FLAPJ (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=purC PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.267e-19
Identity = 55/134 (41.04%), Postives = 80/134 (59.70%), Query Frame = 1
Query:  409 NRLSETNLHLTVPGLKSKTRGKVRDIYDGGD-YLVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHITPNAVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGL 804
            N ++ TN +   P  KS  RGKVR++Y+  D  LV+V TDR SAFD +L   IP+KGQ+LN+ +  + + T+ I PN +I++PD NV +   C    VE V+RG+++G         Y  G R  CG  +P+GL
Sbjct:    2 NTITTTNFNF--PNQKSVYRGKVREVYNINDELLVMVATDRLSAFDVVLPEGIPYKGQILNQIATKFMELTQDIVPNWLIATPDPNVAVGHLCEPFKVEMVIRGYLSGHAARE----YALGKRTICGVTMPEGL 129          
BLAST of CK933007 vs. ExPASy Swiss-Prot
Match: PUR7_DESOH (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=purC PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.161e-19
Identity = 58/140 (41.43%), Postives = 77/140 (55.00%), Query Frame = 1
Query:  433 HLTVPGLKSKTRGKVRDIYDGGDYLVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHITPNAVISSPDKNV---------------TIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGL 804
            H   PGL    RGKVRD+YD GD L++V TDR SAFD ++   IP KG++L + SL+WFDQ + I  N +ISS   +                 +  K   + +E VVRG+++GS     W  Y K  R  CG +LPDGL
Sbjct:    7 HTDFPGLNLLKRGKVRDVYDFGDRLLIVATDRLSAFDVVMPDPIPGKGEILTQISLFWFDQVKDIVRNHLISSDVNDYPEACRPYAETLAGRSMLVTKTEPLAIECVVRGYLSGSG----WKSYQKD-RTVCGISLPDGL 141          
BLAST of CK933007 vs. ExPASy Swiss-Prot
Match: PUR7_GEOSL (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Geobacter sulfurreducens GN=purC PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.686e-19
Identity = 63/147 (42.86%), Postives = 80/147 (54.42%), Query Frame = 1
Query:  415 LSETNLHLTVPGLKSKTRGKVRDIYDGGDYLVLVTTDRQSAFDRIL-ASIPFKGQVLNETSLWWFDQTRHITPNAVISSPDKNV---------------TIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLV 807
            ++E  L    P LK   RGKVRDIYD GD L++VTTDR SAFD I+  +IP KG VL + S +WF Q   I PN +IS+  K+                 + KK   +PVE +VRG+++GS     W  Y K     CG  LP GLV
Sbjct:    1 MAELVLKTDFPDLKLAGRGKVRDIYDLGDALLIVTTDRISAFDVIMNEAIPDKGYVLTQISSFWFRQMEDIIPNHIISTDVKDFPAECQKYAAQLEGRSMLVKKAKPLPVECIVRGYISGSG----WKDY-KATGAICGITLPAGLV 142          
BLAST of CK933007 vs. ExPASy Swiss-Prot
Match: PUR7_THEYD (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=purC PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.401e-18
Identity = 60/151 (39.74%), Postives = 84/151 (55.63%), Query Frame = 1
Query:  403 LSNRLSETNLHLTVPGLKSKTRGKVRDIYDGGDYLVLVTTDRQSAFDRIL-ASIPFKGQVLNETSLWWFDQTRHITPNAVISSP---------------DKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLV 807
            + N + ETNL     G+K   RGKVRDIY+  DYL++V TDR SAFD +L   IP KG++L + SL+WFD+ + I  N ++S+                +    + KK   +PVE +VRG+++GS     W  Y K     CG  LP+GLV
Sbjct:    1 MKNVVLETNLK----GVKLLRRGKVRDIYEIEDYLLIVATDRVSAFDVVLPTGIPEKGKILTQISLFWFDKVKDIVENHLVSANADEFPEPLPAYKEILEGRSMLVKKAKPLPVECIVRGYLSGSG----WKDYQK-TGMICGIKLPEGLV 142          
BLAST of CK933007 vs. ExPASy Swiss-Prot
Match: PUR7_PELPD (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Pelobacter propionicus (strain DSM 2379) GN=purC PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.120e-18
Identity = 62/146 (42.47%), Postives = 80/146 (54.79%), Query Frame = 1
Query:  415 LSETNLHLTVPGLKSKTRGKVRDIYDGGDYLVLVTTDRQSAFDRIL-ASIPFKGQVLNETSLWWFDQTRHITPNAVISS----------PDKNV-----TIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGL 804
            +S   +H   PGLK   RGKVRDIYD G+ L+LVT+DR SAFD I+   IP KG VL E S +WF Q   I  N +IS+          P  ++      + KK   +PVE +VRG+V+GS     W  Y     + CG +LP GL
Sbjct:    1 MSHPVMHTDFPGLKLLARGKVRDIYDLGETLLLVTSDRISAFDVIMNEPIPDKGFVLTEISSFWFRQMEDIVSNHIISTDVDEFPAACRPHADLLRGRSMLVKKARPLPVECIVRGYVSGSG----WKEYQSS-GSICGISLPPGL 141          
BLAST of CK933007 vs. ExPASy Swiss-Prot
Match: PUR7_GEOMG (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=purC PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.120e-18
Identity = 59/137 (43.07%), Postives = 76/137 (55.47%), Query Frame = 1
Query:  445 PGLKSKTRGKVRDIYDGGDYLVLVTTDRQSAFDRIL-ASIPFKGQVLNETSLWWFDQTRHITPNAVISSPDKNV---------------TIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLV 807
            P LK   RGKVRDIYD G+ L++VTTDR SAFD I+   IP KG VL + S +WF Q   I PN +IS+  K+                 + KK + +P E +VRG+++GS     W  Y K   + CG  LP GLV
Sbjct:   11 PDLKLVARGKVRDIYDLGEALLIVTTDRISAFDVIMNEGIPDKGYVLTQISAFWFRQMEDIIPNHIISTEVKDFPAECQKYAADLEGRSMLVKKANPLPAECIVRGYISGSG----WKDY-KATGSICGIKLPAGLV 142          
BLAST of CK933007 vs. ExPASy Swiss-Prot
Match: PUR7_STRAW (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Streptomyces avermitilis GN=purC PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.078e-18
Identity = 61/136 (44.85%), Postives = 78/136 (57.35%), Query Frame = 1
Query:  436 LTVPGLKSKTRGKVRDIY--DGGDYLVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHITPNAVISSP---------DKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLV 807
            L VPGL     GKVRD+Y  + GD LV+V +DR SAFD +L + IP KG+VL + SLWWFD+   + PN V+S+               I K   + PVE V RG++TGS        YN+  R  CG ALP+GLV
Sbjct:   11 LQVPGLVHLHTGKVRDLYQNEAGD-LVMVASDRLSAFDWVLPTEIPDKGRVLTQLSLWWFDRLVDLAPNHVLSTELPPGAPADWQGRTLICKSLKMEPVECVARGYLTGSG----LVEYNE-TRTVCGLALPEGLV 140          
The following BLAST results are available for this feature:
BLAST of CK933007 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
PUR7_BACFN5.495e-2344.19Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_CYTH33.334e-2043.61Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_AZOPC3.334e-2046.49Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_FLAPJ1.267e-1941.04Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_DESOH2.161e-1941.43Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_GEOSL3.686e-1942.86Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_THEYD1.401e-1839.74Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_PELPD3.120e-1842.47Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_GEOMG3.120e-1843.07Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_STRAW9.078e-1844.85Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004348_H03 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIF_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933007 ID=CK933007; Name=CK933007; organism=Citrus sinensis; type=EST; length=809bp
GGGGGCGCCTTTAGGAGCCGAAGAGCAACAACGCGCAAAACCTCGGAAAC
CTGACGCTATGTCCATTTATTCAGCCACTTAGACTCACTGTAGAGACAAA
ATTTCAAAGCAACAATGGCTGAGTGTATGCGTACAACCTTAAACCCTCCA
AAAACCCCACTTCACAGCAACAAAATCTTAGCTCCAAAACTCTCATTCTC
ATCTTCTTTCTCTTCATTTGGAACAAAACCCAATTCTTCTAATTCAAACA
ATTATCCAAGAATCTCTCTATCTGTCATGTCCAACAAGAACCAGAACCAG
AACCAGAACCAAAACCACCACCACCACCAACAATACTTGTCTCTTGATGC
TGTGATTAGCAGCAATCGCAAAGCAGAGCTTCTTGGTGACATCAAAGGCT
CGCTTTCGAACCGTCTCTCCGAGACAAATCTTCACTTGACTGTTCCCGGT
CTCAAATCCAAAACCAGGGGCAAGGTGAGAGATATTTATGATGGCGGGGA
TTATCTTGTTCTGGTGACAACGGACCGCCAAAGTGCGTTCGATAGAATTC
TTGCTTCTATTCCCTTCAAAGGCCAGGTTCTTAATGAAACGAGTTTGTGG
TGGTTTGATCAAACTAGGCACATAACTCCAAATGCAGTCATTTCATCTCC
GGATAAAAATGTTACAATTGCGAAGAAGTGTTCTGTTATCCCTGTTGAAT
TTGTAGTCAGAGGTTTTGTGACTGGAAGTACTGATACCTCTCTGTGGACG
GTTTACAATAAAGGCATCCGAAATTATTGTGGCAATGCTCTCCCAGATGG
CTTGGTGAA
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