CK933007

Overview
NameCK933007
Unique NameCK933007
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length809
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933007_ssr314 microsatellite CK933007_ssr314:314..328. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1513 contig Csv1_Contig1513:1..809. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933007 vs. ExPASy Swiss-Prot
Match: PUR7_GEOLS (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=purC PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.078e-18
Identity = 60/136 (44.12%), Postives = 76/136 (55.88%), Query Frame = 1
Query:  445 PGLKSKTRGKVRDIYDGGDYLVLVTTDRQSAFDRIL-ASIPFKGQVLNETSLWWFDQTRHITPNAVISS----------PDKNV-----TIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGL 804
            PGLK   RGKVRDIYD GD L++VT+DR SAFD I+   IP KG+VL + S +WF Q   I PN +IS+          P   V      + KK   +  E +VRG+V+GS     W  Y K   + CG  LP+GL
Sbjct:   11 PGLKLVNRGKVRDIYDLGDALLMVTSDRISAFDVIMNEPIPDKGKVLTQISKFWFSQMEDIIPNHIISTDVADYPAACQPYAEVLAGRSMLVKKAEPLAAECIVRGYVSGSG----WKDY-KATGSICGIKLPEGL 141          
BLAST of CK933007 vs. ExPASy Swiss-Prot
Match: PUR7_GEOUR (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Geobacter uraniireducens (strain Rf4) GN=purC PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.186e-17
Identity = 59/146 (40.41%), Postives = 78/146 (53.42%), Query Frame = 1
Query:  415 LSETNLHLTVPGLKSKTRGKVRDIYDGGDYLVLVTTDRQSAFDRIL-ASIPFKGQVLNETSLWWFDQTRHITPNAVISSPDKNV---------------TIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGL 804
            +S+  L    P LK   RGKVRDIYD G+ L++VTTDR SAFD I+   IP KG VL + S +WF Q   I PN +IS+  K+                 + KK   +P E +VRG+++GS     W  Y +   + CG  LP GL
Sbjct:    1 MSKLVLTTDFPDLKLAARGKVRDIYDLGETLLIVTTDRISAFDVIMNEGIPDKGYVLTQISAFWFRQMEDIIPNHIISTEVKDFPAECQKYADVLEGRSMLVKKAKPLPAECIVRGYISGSG----WKDY-QATGSVCGITLPAGL 141          
BLAST of CK933007 vs. ExPASy Swiss-Prot
Match: PUR7_GEOSF (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Geobacter sp. (strain FRC-32) GN=purC PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.549e-17
Identity = 59/146 (40.41%), Postives = 78/146 (53.42%), Query Frame = 1
Query:  415 LSETNLHLTVPGLKSKTRGKVRDIYDGGDYLVLVTTDRQSAFDRIL-ASIPFKGQVLNETSLWWFDQTRHITPNAVISSPDKNV---------------TIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGL 804
            +S+  L    P LK   RGKVRDIYD G+ L++VTTDR SAFD I+   IP KG VL + S +WF Q   I  N +IS+  K+                 + KK   +P E +VRG+++GS     W  Y K   + CG  LP+GL
Sbjct:    1 MSKLVLTTDFPDLKLAARGKVRDIYDLGETLLIVTTDRISAFDVIMNEGIPDKGYVLTQISAFWFRQMEDIIKNHIISTEVKDFPSACQKYADILEGRSMLVKKAKPLPAECIVRGYISGSG----WKDY-KATGSICGIKLPEGL 141          
BLAST of CK933007 vs. ExPASy Swiss-Prot
Match: PUR7_STRCO (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Streptomyces coelicolor GN=purC PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.022e-17
Identity = 57/136 (41.91%), Postives = 80/136 (58.82%), Query Frame = 1
Query:  436 LTVPGLKSKTRGKVRDIY--DGGDYLVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHITPNAVISSP---------DKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLV 807
            + VPGL     GKVR++Y  + GD LV+V +DR SA+D +L + IP KG+VL + SLWWFDQ   + PN V+S+          +    + K   ++PVE V RG++TGS        Y++  R  CG ALP+GLV
Sbjct:   11 IQVPGLVHLHTGKVRELYRNEAGD-LVMVASDRISAYDWVLPTEIPDKGRVLTQLSLWWFDQLADLAPNHVLSTELPPGAPADWEGRALVCKSLRMVPVECVARGYLTGSG----LAEYDE-TRTVCGLALPEGLV 140          
BLAST of CK933007 vs. ExPASy Swiss-Prot
Match: PUR7_STRGG (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=purC PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.311e-16
Identity = 58/134 (43.28%), Postives = 73/134 (54.48%), Query Frame = 1
Query:  442 VPGLKSKTRGKVRDIY--DGGDYLVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHITPNAVISSP---------DKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLV 807
            VPGL     GKVRD+Y  + GD LV+V +DR SA+D +L + IP KG+VL   SLWWFDQ   + PN VIS+               I K   ++ VE V RG++TGS       V     R  CG  LP+GLV
Sbjct:   13 VPGLTHLHTGKVRDLYRNEAGD-LVMVASDRISAYDWVLPTEIPDKGRVLTRLSLWWFDQLADLVPNHVISTELPPGAPADWAGRTLICKSLRMVEVECVARGYLTGS-----GLVEYDATRTVCGIGLPEGLV 140          
BLAST of CK933007 vs. ExPASy Swiss-Prot
Match: PUR7_GEOBB (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=purC PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.311e-16
Identity = 59/141 (41.84%), Postives = 75/141 (53.19%), Query Frame = 1
Query:  430 LHLTVPGLKSKTRGKVRDIYDGGDYLVLVTTDRQSAFDRIL-ASIPFKGQVLNETSLWWFDQTRHITPNAVISS----------PDKNVTI-----AKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGL 804
            L+   PGLK   RGKVRDIYD G+ L++VTTDR SAFD I+   IP KG VL + S +WF Q   I  N +IS+          P  +V        KK   +  E +VRG+++GS     W  Y K     CG  LP+GL
Sbjct:    6 LNTDFPGLKLAARGKVRDIYDLGETLLIVTTDRISAFDVIMNEGIPHKGYVLTQISAYWFRQMEDIIKNHIISTDVTDFPKECQPYADVLAGRSMWVKKAKPLAAECIVRGYISGSG----WKDYQK-TGAICGIKLPEGL 141          
BLAST of CK933007 vs. ExPASy Swiss-Prot
Match: PUR7_PELCD (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=purC PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.712e-16
Identity = 52/142 (36.62%), Postives = 77/142 (54.23%), Query Frame = 1
Query:  430 LHLTVPGLKSKTRGKVRDIYDGGDYLVLVTTDRQSAFDRIL-ASIPFKGQVLNETSLWWFDQTRHITPNAVISSP---------------DKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLV 807
            L    P LK   +GKVRDIYD G++L++VT+DR SAFD ++   IP+KG VL + S +WFD    I P+ ++S+                +    + +K   +P+E +VRG++ GS     W  Y +     CG ALP G+V
Sbjct:    6 LQTDFPNLKLVNKGKVRDIYDLGEHLLIVTSDRISAFDVVMNEGIPYKGFVLTQISKFWFDAFSDIVPHHLVSTEVDDFPAETRPYRDQLEGRSMLVRKAEPLPIECIVRGYLAGSG----WKEYRQQ-GTVCGIALPPGMV 142          
BLAST of CK933007 vs. ExPASy Swiss-Prot
Match: PUR7_ELUMP (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Elusimicrobium minutum (strain Pei191) GN=purC PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.712e-16
Identity = 56/144 (38.89%), Postives = 75/144 (52.08%), Query Frame = 1
Query:  427 NLHLTVPGLKSKTRGKVRDIYDGGDYLVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHITPNAVISSPDKNVTI-----------------AKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGL 804
            N  + +P LK   +GKVRD+YD G  L++V +DR S FD +L S IP KG++L + S +WF +T  I PN +ISS    + I                  KKC  I  E VVRG++TGS     W  Y K     CG  + +GL
Sbjct:    3 NSQINLPLLK---KGKVRDVYDAGKMLLIVASDRVSVFDCVLPSQIPDKGKILTQISNFWFAKTISIVPNHMISSDINEINIILKLGLDPQYYSGRTVLVKKCERIDFECVVRGYITGSA----WKEYQKS-GTVCGEKIKEGL 138          
BLAST of CK933007 vs. ExPASy Swiss-Prot
Match: PUR7_DESAD (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=purC PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.920e-16
Identity = 55/147 (37.41%), Postives = 82/147 (55.78%), Query Frame = 1
Query:  415 LSETNLHLTVPGLKSKTRGKVRDIYD-GGDYLVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHITPNAVISSP---------------DKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGL 804
            +S+  +   +  LK  +RGKVRDIY+   D L+LVTTDR SA+D I+ + I  KG++LN+ +L+W D  + I PN +I+S                +    + KK   +P+E +VRG++TGS     W  Y K     CG+ LP+GL
Sbjct:    1 MSKHVVETDIKELKLLSRGKVRDIYEVDDDKLLLVTTDRISAYDVIMPNPIDDKGKILNQITLFWMDMFKDIIPNHLIASKVDDYPEVLHKYRDQLEGRSVLVKKAKPLPIECIVRGYITGSG----WKDYQK-TGEVCGHKLPEGL 142          
BLAST of CK933007 vs. ExPASy Swiss-Prot
Match: PUR7_XANAC (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Xanthomonas axonopodis pv. citri GN=purC PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.814e-16
Identity = 57/156 (36.54%), Postives = 80/156 (51.28%), Query Frame = 1
Query:  415 LSETNLHLTVPGLKSKTRGKVRDIYD-----------GGDYLVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHITPNAVIS------SPD--------KNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGL 804
            +S T L   +PGL  + RGKVRD++D            GDYL++V TDR SAFD +L   IP KG++L + S +WF +T H+ PN ++        P+        K   + +K   +PVE + RG+V GS     W  Y +      G  LPDGL
Sbjct:    3 VSTTLLQSDLPGLPLRHRGKVRDVFDIPRDRLPADAPPGDYLLMVATDRLSAFDVVLPDPIPGKGEMLCQVSNFWFHKTEHLMPNHLVDIRVEQVLPEGVDPALYAKRAVVTRKLKPVPVEAIARGYVIGSG----WKDYQR-TGKISGIELPDGL 153          
The following BLAST results are available for this feature:
BLAST of CK933007 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
PUR7_GEOLS9.078e-1844.12Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_GEOUR1.186e-1740.41Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_GEOSF1.549e-1740.41Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_STRCO2.022e-1741.91Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_STRGG1.311e-1643.28Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_GEOBB1.311e-1641.84Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_PELCD1.712e-1636.62Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_ELUMP1.712e-1638.89Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_DESAD2.920e-1637.41Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_XANAC3.814e-1636.54Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004348_H03 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIF_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933007 ID=CK933007; Name=CK933007; organism=Citrus sinensis; type=EST; length=809bp
GGGGGCGCCTTTAGGAGCCGAAGAGCAACAACGCGCAAAACCTCGGAAAC
CTGACGCTATGTCCATTTATTCAGCCACTTAGACTCACTGTAGAGACAAA
ATTTCAAAGCAACAATGGCTGAGTGTATGCGTACAACCTTAAACCCTCCA
AAAACCCCACTTCACAGCAACAAAATCTTAGCTCCAAAACTCTCATTCTC
ATCTTCTTTCTCTTCATTTGGAACAAAACCCAATTCTTCTAATTCAAACA
ATTATCCAAGAATCTCTCTATCTGTCATGTCCAACAAGAACCAGAACCAG
AACCAGAACCAAAACCACCACCACCACCAACAATACTTGTCTCTTGATGC
TGTGATTAGCAGCAATCGCAAAGCAGAGCTTCTTGGTGACATCAAAGGCT
CGCTTTCGAACCGTCTCTCCGAGACAAATCTTCACTTGACTGTTCCCGGT
CTCAAATCCAAAACCAGGGGCAAGGTGAGAGATATTTATGATGGCGGGGA
TTATCTTGTTCTGGTGACAACGGACCGCCAAAGTGCGTTCGATAGAATTC
TTGCTTCTATTCCCTTCAAAGGCCAGGTTCTTAATGAAACGAGTTTGTGG
TGGTTTGATCAAACTAGGCACATAACTCCAAATGCAGTCATTTCATCTCC
GGATAAAAATGTTACAATTGCGAAGAAGTGTTCTGTTATCCCTGTTGAAT
TTGTAGTCAGAGGTTTTGTGACTGGAAGTACTGATACCTCTCTGTGGACG
GTTTACAATAAAGGCATCCGAAATTATTGTGGCAATGCTCTCCCAGATGG
CTTGGTGAA
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