CK933007

Overview
NameCK933007
Unique NameCK933007
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length809
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933007_ssr314 microsatellite CK933007_ssr314:314..328. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1513 contig Csv1_Contig1513:1..809. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933007 vs. ExPASy Swiss-Prot
Match: PUR7_XANCB (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Xanthomonas campestris pv. campestris (strain B100) GN=purC PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.497e-16
Identity = 56/156 (35.90%), Postives = 80/156 (51.28%), Query Frame = 1
Query:  415 LSETNLHLTVPGLKSKTRGKVRDIYD-----------GGDYLVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHITPNAVIS------SPD--------KNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGL 804
            +S T L   +PGL  + RGKVRD++D            GDYL++V TDR SAFD +L   IP KG++L + S +WF +T H+ PN ++        P+        K   + +K   +PVE + RG++ GS     W  Y +      G  LPDGL
Sbjct:    3 VSTTLLQSDLPGLPLRHRGKVRDVFDIPRDRLPADAPPGDYLLMVATDRLSAFDVVLPDPIPGKGEMLCQVSNFWFHKTEHLMPNHLVDIRVEQVLPEGVDPALYAKRAVVTRKLKPVPVEAIARGYLIGSG----WKDYQR-TGKISGIELPDGL 153          
BLAST of CK933007 vs. ExPASy Swiss-Prot
Match: PUR7_XANC8 (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=purC PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.497e-16
Identity = 56/156 (35.90%), Postives = 80/156 (51.28%), Query Frame = 1
Query:  415 LSETNLHLTVPGLKSKTRGKVRDIYD-----------GGDYLVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHITPNAVIS------SPD--------KNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGL 804
            +S T L   +PGL  + RGKVRD++D            GDYL++V TDR SAFD +L   IP KG++L + S +WF +T H+ PN ++        P+        K   + +K   +PVE + RG++ GS     W  Y +      G  LPDGL
Sbjct:    3 VSTTLLQSDLPGLPLRHRGKVRDVFDIPRDRLPADAPPGDYLLMVATDRLSAFDVVLPDPIPGKGEMLCQVSNFWFHKTEHLMPNHLVDIRVEQVLPEGVDPALYAKRAVVTRKLKPVPVEAIARGYLIGSG----WKDYQR-TGKISGIELPDGL 153          
BLAST of CK933007 vs. ExPASy Swiss-Prot
Match: PUR7_DESAH (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=purC PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.110e-15
Identity = 57/143 (39.86%), Postives = 76/143 (53.15%), Query Frame = 1
Query:  430 LHLTVPGLKSKTRGKVRDIYDGGDYLVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHITPNAVISS-----PD----------KNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVY-NKGIRNYCGNALPDGLV 807
            L    P +    +GKVRDIYD G+  ++VTTDR SAFD +L + IP KG+VL + S +WF Q   +  N +IS+     PD              + KK   +PVE +VRG+++GS     W  Y N G    CG  LP GLV
Sbjct:    6 LETQFPDMNLVRKGKVRDIYDTGEAFLMVTTDRLSAFDVVLPNGIPGKGKVLTKISEFWFKQMAPLVGNHLISTDVADFPDVCQPYAKVLSGRTMLVKKAEPLPVECIVRGYISGSG----WKSYQNNG--TLCGITLPKGLV 142          
BLAST of CK933007 vs. ExPASy Swiss-Prot
Match: PUR7_THISH (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=purC PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.449e-15
Identity = 55/129 (42.64%), Postives = 72/129 (55.81%), Query Frame = 1
Query:  466 RGKVRDIYD-GGDYLVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHITPNAVI------SSPDK--------NVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGL 804
            RGKVRD+Y  G D+L++VTTDR SAFD IL + IP KG+VL + S +WF +  HI PN +       + PD            + K+   +P+E VVRG++ GS     W  Y K     CGN LP GL
Sbjct:   18 RGKVRDLYAVGDDHLLIVTTDRVSAFDVILPTPIPGKGEVLTKISEFWFRKLEHIVPNQLADMSLAEAVPDAAERAPLEGRSLVVKRLKALPIEAVVRGYLIGSG----WKDYQK-TGQVCGNPLPAGL 141          
BLAST of CK933007 vs. ExPASy Swiss-Prot
Match: PUR7_SALTO (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=purC PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.472e-15
Identity = 42/93 (45.16%), Postives = 60/93 (64.52%), Query Frame = 1
Query:  469 GKVRDIYDGGDYLVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHITPNAVISSPDKNVTIA------KKCSVIPVEFVVRGFVTG 726
            GKVRD+Y  GD L+LV +DR S +D +L + IP KG++L   SLWWFDQ   + PN V+S+ D  V +A      ++  ++PVE V RG++ G
Sbjct:    7 GKVRDVYADGDDLILVASDRVSVYDVVLPTPIPEKGKLLTALSLWWFDQLAELVPNHVLSATDVPVELAGRAIRCRRLEMVPVECVARGYLVG 99          
BLAST of CK933007 vs. ExPASy Swiss-Prot
Match: PUR7_LEPCP (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=purC PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.229e-15
Identity = 57/145 (39.31%), Postives = 79/145 (54.48%), Query Frame = 1
Query:  415 LSETNLHLTVPGLKSKTRGKVRDIYD-GGDYLVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHITPNAV-------ISSPDK------NVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGL 804
            L E+ LH     L    RGKVRD Y  G D +++V +DR SAFD I+   IP KG++L   +L+WFD+  HI PN +       + +PD+         + K+   +PVE VVRG++ GS     W  Y +  R+ CG ALP GL
Sbjct:    5 LLESQLH----SLPLLARGKVRDNYAVGTDRILMVASDRLSAFDVIMGEGIPGKGELLTRVALYWFDRLGHIVPNHLTGADPVSVVAPDEVDQVRGRSMLVKRLKPLPVEAVVRGYLAGSG----WKEYQE-TRSVCGVALPSGL 140          
BLAST of CK933007 vs. ExPASy Swiss-Prot
Match: PUR7_EUBE2 (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=purC PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.217e-15
Identity = 48/126 (38.10%), Postives = 71/126 (56.35%), Query Frame = 1
Query:  469 GKVRDIYDGGDYLVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHITPNAVISSPDKNV-------------TIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGL 804
            GKVR++YD  D LV+V TDR SAFD IL + +  KG +L + S +WFD T+ +  N ++S    ++              + KK +++PVE +VRG++TGS     W  Y +     CG  LP+GL
Sbjct:   14 GKVREVYDCDDKLVMVATDRISAFDHILKNKVTEKGAILTQMSKFWFDYTKDVVANHMVSVDVNDMPEFFHKDEYIGRSMLCKKLTMLPVECIVRGYITGSG----WASYKEN-GTVCGIKLPEGL 134          
BLAST of CK933007 vs. ExPASy Swiss-Prot
Match: PUR7_NITEU (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Nitrosomonas europaea GN=purC PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.193e-15
Identity = 53/128 (41.41%), Postives = 76/128 (59.38%), Query Frame = 1
Query:  466 RGKVRDIYDGGD-YLVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRH--------ITPNAVISSPDKN-----VTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGL 804
            RGKVRDIY   + +L+++ TDR SAFD IL + IP KG++L + S +WFD+  H        ITP +V+SS +++       I +K   +PVE +VRG+++GS     W  Y +     CG ALP GL
Sbjct:   19 RGKVRDIYAVDENHLLIIQTDRVSAFDVILPTPIPEKGKILTKISRFWFDKLAHIIPNHLTDITPESVVSSREQDQVSDRAFIVRKLKPLPVEAIVRGYISGSG----WKDYQRS-GTICGIALPAGL 141          
BLAST of CK933007 vs. ExPASy Swiss-Prot
Match: PUR7_STRM5 (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Stenotrophomonas maltophilia (strain R551-3) GN=purC PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.602e-14
Identity = 55/153 (35.95%), Postives = 77/153 (50.33%), Query Frame = 1
Query:  424 TNLHLTVPGLKSKTRGKVRDIYD-----------GGDYLVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHITPNAVIS------SPD--------KNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGL 804
            T L   +PGL  + RGKVRD++D            GDYL++V TDR SAFD +L   IP KG++L + S +WF +T H+ PN +         P+        K   + +K   +PVE + RG++ GS     W  Y +      G  LPDGL
Sbjct:    4 TLLQSDLPGLPLRHRGKVRDVFDIPRERLPAGTPPGDYLLMVATDRLSAFDVVLPDPIPGKGEMLCQVSNFWFAKTAHLMPNHLTGIDVASVLPEGVDPALYAKRAVVTRKLKPVPVEAIARGYLIGSG----WKDYQR-TGKVSGIDLPDGL 151          
BLAST of CK933007 vs. ExPASy Swiss-Prot
Match: PUR7_METFK (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=purC PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.602e-14
Identity = 51/141 (36.17%), Postives = 78/141 (55.32%), Query Frame = 1
Query:  430 LHLTVPGLKSKTRGKVRDIYDGGD-YLVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHIT--------PNAVISSPDK------NVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGL 804
            +H ++  LK   +GKVRDIYD  D +++LV +DR SAFD IL + I  KG +L + + +WF++ +HI         PN V+  P +         + KK   +P+E +VRG++ GS     W  Y +  ++ CG  LP GL
Sbjct:    6 MHSSIKSLKLINQGKVRDIYDIDDRHMLLVASDRLSAFDVILPTPIKDKGAILTQIANFWFEKLKHIVPNHLTGIDPNTVVKDPAEQAQLGPRALVVKKLKPLPIEAIVRGYLAGSG----WKEY-QASQSVCGIPLPAGL 141          
The following BLAST results are available for this feature:
BLAST of CK933007 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
PUR7_XANCB8.497e-1635.90Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_XANC88.497e-1635.90Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_DESAH1.110e-1539.86Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_THISH1.449e-1542.64Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_SALTO2.472e-1545.16Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_LEPCP3.229e-1539.31Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_EUBE24.217e-1538.10Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_NITEU7.193e-1541.41Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_STRM51.602e-1435.95Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_METFK1.602e-1436.17Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004348_H03 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIF_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933007 ID=CK933007; Name=CK933007; organism=Citrus sinensis; type=EST; length=809bp
GGGGGCGCCTTTAGGAGCCGAAGAGCAACAACGCGCAAAACCTCGGAAAC
CTGACGCTATGTCCATTTATTCAGCCACTTAGACTCACTGTAGAGACAAA
ATTTCAAAGCAACAATGGCTGAGTGTATGCGTACAACCTTAAACCCTCCA
AAAACCCCACTTCACAGCAACAAAATCTTAGCTCCAAAACTCTCATTCTC
ATCTTCTTTCTCTTCATTTGGAACAAAACCCAATTCTTCTAATTCAAACA
ATTATCCAAGAATCTCTCTATCTGTCATGTCCAACAAGAACCAGAACCAG
AACCAGAACCAAAACCACCACCACCACCAACAATACTTGTCTCTTGATGC
TGTGATTAGCAGCAATCGCAAAGCAGAGCTTCTTGGTGACATCAAAGGCT
CGCTTTCGAACCGTCTCTCCGAGACAAATCTTCACTTGACTGTTCCCGGT
CTCAAATCCAAAACCAGGGGCAAGGTGAGAGATATTTATGATGGCGGGGA
TTATCTTGTTCTGGTGACAACGGACCGCCAAAGTGCGTTCGATAGAATTC
TTGCTTCTATTCCCTTCAAAGGCCAGGTTCTTAATGAAACGAGTTTGTGG
TGGTTTGATCAAACTAGGCACATAACTCCAAATGCAGTCATTTCATCTCC
GGATAAAAATGTTACAATTGCGAAGAAGTGTTCTGTTATCCCTGTTGAAT
TTGTAGTCAGAGGTTTTGTGACTGGAAGTACTGATACCTCTCTGTGGACG
GTTTACAATAAAGGCATCCGAAATTATTGTGGCAATGCTCTCCCAGATGG
CTTGGTGAA
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