CK933007

Overview
NameCK933007
Unique NameCK933007
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length809
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933007_ssr314 microsatellite CK933007_ssr314:314..328. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1513 contig Csv1_Contig1513:1..809. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933007 vs. ExPASy Swiss-Prot
Match: PUR7_NEIMB (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Neisseria meningitidis serogroup B GN=purC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.959e-12
Identity = 47/127 (37.01%), Postives = 68/127 (53.54%), Query Frame = 1
Query:  469 GKVRDIYDGGDY-LVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHITPNAVISSP-------------DKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGL 804
            GKVRD+Y+  D  +++V +DR SAFD IL   IP KG++L + S +WF +  HI PN                   +K   +AKK + + VE +VRG++ GS     W  Y K   + CG  LP+G+
Sbjct:   12 GKVRDLYEIDDKRMLMVASDRLSAFDVILDDPIPSKGEILTQISNFWFKKLAHIMPNHFTGQTVYDVLPENEAKALEKRAVVAKKLTPVKVEAIVRGYLAGSG----WKDYQK-TGSVCGIQLPEGM 133          
BLAST of CK933007 vs. ExPASy Swiss-Prot
Match: PUR7_RALEH (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=purC PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.558e-12
Identity = 55/149 (36.91%), Postives = 78/149 (52.35%), Query Frame = 1
Query:  403 LSNRLSETNLHLTVPGLKSKTRGKVRDIYD-GGDYLVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHITPN-------AVISSPDK------NVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGL 804
            +SN L +++++     L     GKVRD Y  G D L++VTTDR SAFD I+   IP KG+VLN+ + +WF +  HI PN         + +P++         + K+   I VE VVRG++ GS     W  Y +     CG  LP GL
Sbjct:    1 MSNALYQSSIN----SLPLLGHGKVRDNYAVGNDKLLIVTTDRLSAFDVIMGEPIPDKGRVLNQMANFWFRKLAHIVPNHETGIAPETVVAPEEVEQVKGRAVVVKRLRPILVEAVVRGYLAGSG----WKDY-QATGKVCGIELPAGL 140          
BLAST of CK933007 vs. ExPASy Swiss-Prot
Match: PUR7_PICAN (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Pichia angusta GN=ADE1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.341e-12
Identity = 47/139 (33.81%), Postives = 76/139 (54.68%), Query Frame = 1
Query:  415 LSETNLHLTVPGLKSKTRGKVRDIYDGGDYLVL-VTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHITPNAVISSPDKNV---------------------TIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNK 762
            +++TNL   +P +    RGKVRDIY   D ++L V TDR SA+D I+ + I  KG++L + S++WF+    + PN +++S DK++                      + KK  ++P+E +VRG++TGS     W  Y K
Sbjct:    3 VTQTNLDGILPLV---ARGKVRDIYQVDDNMLLFVATDRISAYDVIMENGIKDKGKILTQLSVFWFNLLSDVIPNHLVASSDKDIFAKLPEQLSEPKYKAQLAGRSLLVKKHKLVPLEAIVRGYITGSA----WKEYKK 134          
BLAST of CK933007 vs. ExPASy Swiss-Prot
Match: PUR7_RALEJ (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Ralstonia eutropha (strain JMP134) GN=purC PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.364e-12
Identity = 55/149 (36.91%), Postives = 74/149 (49.66%), Query Frame = 1
Query:  403 LSNRLSETNLHLTVPGLKSKTRGKVRDIYD-GGDYLVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHITPN-------------AVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGL 804
            +SN L +++    +  L     GKVRD Y  G D L++VTTDR SAFD I+   IP KG+VLN+ + +WF +  HI PN             A +        + K+   I VE VVRG++ GS     W  Y +     CG  LP GL
Sbjct:    1 MSNALYQSS----ISSLPLLGHGKVRDNYAVGEDKLLIVTTDRLSAFDVIMGEPIPDKGRVLNQMANFWFRKLAHIVPNHETGVAAETVVAPAEVEQVKGRAVVVKRLKPILVEAVVRGYLAGSG----WKDY-QATGKVCGIELPAGL 140          
BLAST of CK933007 vs. ExPASy Swiss-Prot
Match: PUR7_HAEIG (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Haemophilus influenzae (strain PittGG) GN=purC PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.700e-12
Identity = 50/145 (34.48%), Postives = 75/145 (51.72%), Query Frame = 1
Query:  436 LTVPGLKSKTRGKVRDIYDGGDY-LVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHITPNAVISSPDKNV-------------TIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNY------CGNALPDGLV 807
            L +  LK    GKVRD+Y+  D  +++V +DR SAFD IL   IP KG++L + S +WF++  HI PN        +V              + K+ + I +E +VRG++TGS           G+++Y      CG  LP+GLV
Sbjct:    5 LPILSLKKIYSGKVRDLYEIDDKRMLMVASDRLSAFDVILDDPIPRKGEILTQISNFWFNKLAHIMPNHFTGDSVYDVLPKEEADLIRDRAVVCKRLNPIKIESIVRGYLTGS-----------GLKDYKQTGTICGLKLPEGLV 138          
BLAST of CK933007 vs. ExPASy Swiss-Prot
Match: PUR7_CUPTR (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=purC PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.700e-12
Identity = 51/127 (40.16%), Postives = 68/127 (53.54%), Query Frame = 1
Query:  469 GKVRDIYD-GGDYLVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHITPN--------AVISSPD-----KNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGL 804
            GKVRD Y  G D L++VTTDR SAFD I+   IP KG+VLN+ + +WF +  HI PN         V+++ +         + K+   I VE VVRG++ GS     W  Y +     CG  LP GL
Sbjct:   19 GKVRDNYAVGNDKLLIVTTDRLSAFDVIMGEPIPDKGRVLNQMANFWFRKLAHIVPNHETGIAPETVVAADEVEQVRGRAVVVKRLKPILVEAVVRGYLAGSG----WKDY-QATGKVCGIELPPGL 140          
BLAST of CK933007 vs. ExPASy Swiss-Prot
Match: PUR7_LEPIN (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Leptospira interrogans GN=purC PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.270e-11
Identity = 48/127 (37.80%), Postives = 66/127 (51.97%), Query Frame = 1
Query:  466 RGKVRDIYDGGDYLVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHITPNAVISSPDK--------------NVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDG 801
            +GKVRDIYD GD L+L ++DR SAFD +    +P KG+VLN  S+ WF+  + + PN ++ +  K                 + KKC  I  E VVRG+++GS     W  Y K      G  LP G
Sbjct:    6 KGKVRDIYDLGDKLILSSSDRISAFDVVFPQLVPDKGKVLNRISVSWFEFFKDV-PNHILETDVKYFPIPFQNHPDLEGRSVLVKKCKRIDYECVVRGYISGSG----WKEY-KNDGTLAGIKLPSG 126          
BLAST of CK933007 vs. ExPASy Swiss-Prot
Match: PUR7_LEPIC (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=purC PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.270e-11
Identity = 48/127 (37.80%), Postives = 66/127 (51.97%), Query Frame = 1
Query:  466 RGKVRDIYDGGDYLVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHITPNAVISSPDK--------------NVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDG 801
            +GKVRDIYD GD L+L ++DR SAFD +    +P KG+VLN  S+ WF+  + + PN ++ +  K                 + KKC  I  E VVRG+++GS     W  Y K      G  LP G
Sbjct:    6 KGKVRDIYDLGDKLILSSSDRISAFDVVFPQLVPDKGKVLNRISVSWFEFFKDV-PNHILETDVKYFPIPFQNHPDLEGRSVLVKKCKRIDYECVVRGYISGSG----WKEY-KNDGTLAGIKLPSG 126          
BLAST of CK933007 vs. ExPASy Swiss-Prot
Match: PUR7_LEIXX (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Leifsonia xyli subsp. xyli GN=purC PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.270e-11
Identity = 48/143 (33.57%), Postives = 72/143 (50.35%), Query Frame = 1
Query:  442 VPGLKSKTRGKVRDIY--------DGGDYLVLVTTDRQSAFDRILA-SIPFKGQVLNETSLWWFDQ---TRHITPNAVI----------SSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGL 804
            +PG K    GKVRD++           D +++V +DR SAFD +L   IP KG++L   SLWWFD+     H+ P+  +          ++      + K   + P+E VVRG++TGS     W  Y +  ++ CG  LP GL
Sbjct:    4 MPGWKHVYSGKVRDLFVPETAEGLTETDTVLVVASDRVSAFDHVLEPGIPGKGELLTALSLWWFDRLDAPNHLIPDHTLEGERARERIPAAVSGRSMLVKPLDMFPIECVVRGYLTGSG----WQEYQES-QSVCGLPLPAGL 141          
BLAST of CK933007 vs. ExPASy Swiss-Prot
Match: PUR7_BORPD (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=purC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.658e-11
Identity = 52/128 (40.62%), Postives = 68/128 (53.12%), Query Frame = 1
Query:  466 RGKVRDIYD-GGDYLVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHITPN-------AVISSPDK------NVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGL 804
            RGKVRD+Y  G D L++V +DR SAFD IL   IP KGQVL E + +W ++  HI PN         + +PD+         + K+   I VE V RG++ GS     W  Y +     CG ALP GL
Sbjct:   18 RGKVRDMYAVGDDKLLIVASDRISAFDVILDDPIPGKGQVLTELTEFWLNKLAHILPNHSTGVRPEDVVAPDELDQVRGRAVVVKRLKPILVEAVARGYLIGSG----WKDY-QATGAVCGIALPAGL 140          
The following BLAST results are available for this feature:
BLAST of CK933007 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
PUR7_NEIMB1.959e-1237.01Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_RALEH2.558e-1236.91Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_PICAN3.341e-1233.81Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_RALEJ4.364e-1236.91Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_HAEIG5.700e-1234.48Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_CUPTR5.700e-1240.16Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_LEPIN1.270e-1137.80Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_LEPIC1.270e-1137.80Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_LEIXX1.270e-1133.57Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_BORPD1.658e-1140.63Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004348_H03 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIF_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933007 ID=CK933007; Name=CK933007; organism=Citrus sinensis; type=EST; length=809bp
GGGGGCGCCTTTAGGAGCCGAAGAGCAACAACGCGCAAAACCTCGGAAAC
CTGACGCTATGTCCATTTATTCAGCCACTTAGACTCACTGTAGAGACAAA
ATTTCAAAGCAACAATGGCTGAGTGTATGCGTACAACCTTAAACCCTCCA
AAAACCCCACTTCACAGCAACAAAATCTTAGCTCCAAAACTCTCATTCTC
ATCTTCTTTCTCTTCATTTGGAACAAAACCCAATTCTTCTAATTCAAACA
ATTATCCAAGAATCTCTCTATCTGTCATGTCCAACAAGAACCAGAACCAG
AACCAGAACCAAAACCACCACCACCACCAACAATACTTGTCTCTTGATGC
TGTGATTAGCAGCAATCGCAAAGCAGAGCTTCTTGGTGACATCAAAGGCT
CGCTTTCGAACCGTCTCTCCGAGACAAATCTTCACTTGACTGTTCCCGGT
CTCAAATCCAAAACCAGGGGCAAGGTGAGAGATATTTATGATGGCGGGGA
TTATCTTGTTCTGGTGACAACGGACCGCCAAAGTGCGTTCGATAGAATTC
TTGCTTCTATTCCCTTCAAAGGCCAGGTTCTTAATGAAACGAGTTTGTGG
TGGTTTGATCAAACTAGGCACATAACTCCAAATGCAGTCATTTCATCTCC
GGATAAAAATGTTACAATTGCGAAGAAGTGTTCTGTTATCCCTGTTGAAT
TTGTAGTCAGAGGTTTTGTGACTGGAAGTACTGATACCTCTCTGTGGACG
GTTTACAATAAAGGCATCCGAAATTATTGTGGCAATGCTCTCCCAGATGG
CTTGGTGAA
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