CK933007

Overview
NameCK933007
Unique NameCK933007
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length809
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933007_ssr314 microsatellite CK933007_ssr314:314..328. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1513 contig Csv1_Contig1513:1..809. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933007 vs. ExPASy Swiss-Prot
Match: PUR7_BORPE (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Bordetella pertussis GN=purC PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.829e-11
Identity = 52/128 (40.62%), Postives = 68/128 (53.12%), Query Frame = 1
Query:  466 RGKVRDIYD-GGDYLVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHITPN-------AVISSPDK------NVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGL 804
            RGKVRD+Y  G D L++V +DR SAFD IL   IP KGQVL E + +W  +  HI PN         + +PD+         + K+   I VE V RG++ GS     W  Y +   + CG ALP GL
Sbjct:   18 RGKVRDMYAVGDDKLLIVASDRISAFDVILDDPIPGKGQVLTELTDFWLRKLAHILPNHSTGIQPEDVVAPDEVDQVRGRAVVVKRLKPILVEAVARGYLIGSG----WKDY-QASGSVCGIALPAGL 140          
BLAST of CK933007 vs. ExPASy Swiss-Prot
Match: PUR7_BORPA (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Bordetella parapertussis GN=purC PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.829e-11
Identity = 52/128 (40.62%), Postives = 68/128 (53.12%), Query Frame = 1
Query:  466 RGKVRDIYD-GGDYLVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHITPN-------AVISSPDK------NVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGL 804
            RGKVRD+Y  G D L++V +DR SAFD IL   IP KGQVL E + +W  +  HI PN         + +PD+         + K+   I VE V RG++ GS     W  Y +   + CG ALP GL
Sbjct:   18 RGKVRDMYAVGDDKLLIVASDRISAFDVILDDPIPGKGQVLTELTDFWLRKLAHILPNHSTGIQPEDVVAPDEVDQVRGRAVVVKRLKPILVEAVARGYLIGSG----WKDY-QASGSVCGIALPAGL 140          
BLAST of CK933007 vs. ExPASy Swiss-Prot
Match: PUR7_BORBR (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Bordetella bronchiseptica GN=purC PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.829e-11
Identity = 52/128 (40.62%), Postives = 68/128 (53.12%), Query Frame = 1
Query:  466 RGKVRDIYD-GGDYLVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHITPN-------AVISSPDK------NVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGL 804
            RGKVRD+Y  G D L++V +DR SAFD IL   IP KGQVL E + +W  +  HI PN         + +PD+         + K+   I VE V RG++ GS     W  Y +   + CG ALP GL
Sbjct:   18 RGKVRDMYAVGDDKLLIVASDRISAFDVILDDPIPGKGQVLTELTDFWLRKLAHILPNHSTGIQPEDVVAPDEVDQVRGRAVVVKRLKPILVEAVARGYLIGSG----WKDY-QASGSVCGIALPAGL 140          
BLAST of CK933007 vs. ExPASy Swiss-Prot
Match: PUR7_MANSM (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=purC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.694e-11
Identity = 49/140 (35.00%), Postives = 70/140 (50.00%), Query Frame = 1
Query:  451 LKSKTRGKVRDIYDGGDY-LVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHITPNAVISSPDKNV-------------TIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNY------CGNALPDGLV 807
            LK    GKVRD+Y+  D  +++V +DR SAFD IL   IP KG++L + S +WF +  HI PN        +V              + K+   I +E +VRG++TGS           G+++Y      CG  LP GLV
Sbjct:    6 LKKIYSGKVRDLYEIDDKRMLMVASDRLSAFDVILEDPIPRKGEILTQISNFWFKKLAHIMPNHFTGDTVYDVLPKEEADLVKNRAVVVKRLKPIKIESIVRGYLTGS-----------GLKDYKQTGTICGLQLPQGLV 134          
BLAST of CK933007 vs. ExPASy Swiss-Prot
Match: PUR7_HAES2 (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Haemophilus somnus (strain 2336) GN=purC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.694e-11
Identity = 50/145 (34.48%), Postives = 72/145 (49.66%), Query Frame = 1
Query:  436 LTVPGLKSKTRGKVRDIYDGGDY-LVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHITPN-------------AVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNY------CGNALPDGLV 807
            +T   LK    GKVRD+Y+  D  +++V TDR SAFD IL   I  KG++L + S +WF +  HI PN             A          + K+ + I +E +VRG++TGS           G+++Y      CG  LP+GLV
Sbjct:    1 MTQLSLKKIYSGKVRDLYEIDDKRMLMVATDRLSAFDVILDDPIDRKGEILTQISNFWFKKLAHIMPNHFTGETVYDVLPQAEADLVKDRAVVCKRLTPIKIESIVRGYLTGS-----------GLKDYKATGTICGLKLPEGLV 134          
BLAST of CK933007 vs. ExPASy Swiss-Prot
Match: PUR7_ACTSZ (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=purC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.694e-11
Identity = 49/140 (35.00%), Postives = 70/140 (50.00%), Query Frame = 1
Query:  451 LKSKTRGKVRDIYDGGDY-LVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHITPNAVISSPDKNV-------------TIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNY------CGNALPDGLV 807
            LK    GKVRD+Y+  D  +++V +DR SAFD IL   IP KG++L + S +WF +  HI PN        +V              + K+   I +E +VRG++TGS           G+++Y      CG  LP GLV
Sbjct:    6 LKKIYSGKVRDLYEIDDKRMLMVASDRLSAFDVILDDPIPHKGEILTQISNFWFKKLAHIMPNHFTGDSVYDVLPKAEADLLKDRAVVVKRLKPIKIESIVRGYLTGS-----------GLKDYQQTGTICGLELPKGLV 134          
BLAST of CK933007 vs. ExPASy Swiss-Prot
Match: PUR72_BRAJA (Putative phosphoribosylaminoimidazole-succinocarboxamide synthase B OS=Bradyrhizobium japonicum GN=purC2 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.825e-11
Identity = 46/134 (34.33%), Postives = 69/134 (51.49%), Query Frame = 1
Query:  466 RGKVRDIYD-GGDYLVLVTTDRQSAFDRILA-SIPFKGQVLNETSLWWFDQTRHITPNAVISSPDKNV------------------TIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLV 807
            RGKVRDIY    D L+L+TTDR SAFD ++  +IP KG VL + S +WF +   + P+ +IS+    +                   ++++ +V P+E V+RG+++GS     W  Y        G  L  GLV
Sbjct:   16 RGKVRDIYAVDDDRLLLLTTDRISAFDVVMGETIPMKGAVLTQISAFWFGELEGVVPHHMISADTDEIIAAVPALKPHRAEILGRAMLSRRTTVFPIECVIRGYLSGSA----WKEYATS-GTLAGEKLKAGLV 144          
BLAST of CK933007 vs. ExPASy Swiss-Prot
Match: PUR7_HAEIE (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Haemophilus influenzae (strain PittEE) GN=purC PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.302e-11
Identity = 48/140 (34.29%), Postives = 72/140 (51.43%), Query Frame = 1
Query:  451 LKSKTRGKVRDIYDGGDY-LVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHITPNAVISSPDKNV-------------TIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNY------CGNALPDGLV 807
            LK    GKVRD+Y+  D  +++V +DR SAFD IL   IP KG++L + S +WF++  HI PN        +V              + K+ + I +E +VRG++TGS           G+++Y      CG  LP+ LV
Sbjct:   10 LKKIYSGKVRDLYEIDDKRMLMVASDRLSAFDVILDDPIPRKGEILTQISNFWFNKLAHIMPNHFTGDSVYDVLPKEEADLIKDRAVVCKRLTPIKIESIVRGYLTGS-----------GLKDYKQTGTICGLKLPENLV 138          
The following BLAST results are available for this feature:
BLAST of CK933007 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
PUR7_BORPE2.829e-1140.63Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_BORPA2.829e-1140.63Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_BORBR2.829e-1140.63Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_MANSM3.694e-1135.00Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_HAES23.694e-1134.48Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_ACTSZ3.694e-1135.00Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR72_BRAJA4.825e-1134.33Putative phosphoribosylaminoimidazole-succinocarbo... [more]
PUR7_HAEIE6.302e-1134.29Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004348_H03 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIF_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933007 ID=CK933007; Name=CK933007; organism=Citrus sinensis; type=EST; length=809bp
GGGGGCGCCTTTAGGAGCCGAAGAGCAACAACGCGCAAAACCTCGGAAAC
CTGACGCTATGTCCATTTATTCAGCCACTTAGACTCACTGTAGAGACAAA
ATTTCAAAGCAACAATGGCTGAGTGTATGCGTACAACCTTAAACCCTCCA
AAAACCCCACTTCACAGCAACAAAATCTTAGCTCCAAAACTCTCATTCTC
ATCTTCTTTCTCTTCATTTGGAACAAAACCCAATTCTTCTAATTCAAACA
ATTATCCAAGAATCTCTCTATCTGTCATGTCCAACAAGAACCAGAACCAG
AACCAGAACCAAAACCACCACCACCACCAACAATACTTGTCTCTTGATGC
TGTGATTAGCAGCAATCGCAAAGCAGAGCTTCTTGGTGACATCAAAGGCT
CGCTTTCGAACCGTCTCTCCGAGACAAATCTTCACTTGACTGTTCCCGGT
CTCAAATCCAAAACCAGGGGCAAGGTGAGAGATATTTATGATGGCGGGGA
TTATCTTGTTCTGGTGACAACGGACCGCCAAAGTGCGTTCGATAGAATTC
TTGCTTCTATTCCCTTCAAAGGCCAGGTTCTTAATGAAACGAGTTTGTGG
TGGTTTGATCAAACTAGGCACATAACTCCAAATGCAGTCATTTCATCTCC
GGATAAAAATGTTACAATTGCGAAGAAGTGTTCTGTTATCCCTGTTGAAT
TTGTAGTCAGAGGTTTTGTGACTGGAAGTACTGATACCTCTCTGTGGACG
GTTTACAATAAAGGCATCCGAAATTATTGTGGCAATGCTCTCCCAGATGG
CTTGGTGAA
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