CK933014

Overview
NameCK933014
Unique NameCK933014
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933014 vs. ExPASy Swiss-Prot
Match: RS23_YEAST (40S ribosomal protein S23 OS=Saccharomyces cerevisiae GN=RPS23A PE=1 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.100e-58
Identity = 109/142 (76.76%), Postives = 124/142 (87.32%), Query Frame = 3
Query:   84 GKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIENGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 506
            GK RG+ + RKL+ HRR  RWA+ +YKK  LG  +K  PF GSSHAKGIVLEK+GIE+KQPNSAIRKC RVQLI+NGKK+ AFVPNDGCLN+++ENDEVL+AGFGRKG A GDIPGVRFKVVKVSGVSLLAL+KEKKEKPRS
Sbjct:    4 GKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS 145          
BLAST of CK933014 vs. ExPASy Swiss-Prot
Match: RS23_SACCA (40S ribosomal protein S23 OS=Saccharomyces castellii GN=RPS23A PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.100e-58
Identity = 109/142 (76.76%), Postives = 124/142 (87.32%), Query Frame = 3
Query:   84 GKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIENGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 506
            GK RG+ + RKL+ HRR  RWA+ +YKK  LG  +K  PF GSSHAKGIVLEK+GIE+KQPNSAIRKC RVQLI+NGKK+ AFVPNDGCLN+++ENDEVL+AGFGRKG A GDIPGVRFKVVKVSGVSLLAL+KEKKEKPRS
Sbjct:    4 GKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS 145          
BLAST of CK933014 vs. ExPASy Swiss-Prot
Match: RS23_SACBA (40S ribosomal protein S23 OS=Saccharomyces bayanus GN=RPS23A PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.100e-58
Identity = 109/142 (76.76%), Postives = 124/142 (87.32%), Query Frame = 3
Query:   84 GKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIENGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 506
            GK RG+ + RKL+ HRR  RWA+ +YKK  LG  +K  PF GSSHAKGIVLEK+GIE+KQPNSAIRKC RVQLI+NGKK+ AFVPNDGCLN+++ENDEVL+AGFGRKG A GDIPGVRFKVVKVSGVSLLAL+KEKKEKPRS
Sbjct:    4 GKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS 145          
BLAST of CK933014 vs. ExPASy Swiss-Prot
Match: RS23_CANGA (40S ribosomal protein S23 OS=Candida glabrata GN=RPS23 PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.100e-58
Identity = 109/142 (76.76%), Postives = 124/142 (87.32%), Query Frame = 3
Query:   84 GKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIENGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 506
            GK RG+ + RKL+ HRR  RWA+ +YKK  LG  +K  PF GSSHAKGIVLEK+GIE+KQPNSAIRKC RVQLI+NGKK+ AFVPNDGCLN+++ENDEVL+AGFGRKG A GDIPGVRFKVVKVSGVSLLAL+KEKKEKPRS
Sbjct:    4 GKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS 145          
BLAST of CK933014 vs. ExPASy Swiss-Prot
Match: RS23_GILMI (40S ribosomal protein S23 OS=Gillichthys mirabilis GN=rps23 PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 7.731e-57
Identity = 105/143 (73.43%), Postives = 122/143 (85.31%), Query Frame = 3
Query:   81 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIENGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 506
            MGK RG+   RKL++HRR Q+W DK YKK+HLG   K  PF  +SHAKGIVLEK+G+EAKQPNSAIRKC RVQLI+NGKKI AFVPNDGCLN+ EENDEVL+AGFGRK HAVGDIPGVRFKVV+++ VSLLAL+K  KE+P+S
Sbjct:    1 MGKCRGLRTARKLRNHRREQKWHDKQYKKAHLGTALKANPFGSASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFXEENDEVLVAGFGRKXHAVGDIPGVRFKVVEMANVSLLALYKGXKERPKS 143          
BLAST of CK933014 vs. ExPASy Swiss-Prot
Match: RS23_CIOIN (40S ribosomal protein S23 OS=Ciona intestinalis GN=RPS23 PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 7.731e-57
Identity = 109/143 (76.22%), Postives = 119/143 (83.22%), Query Frame = 3
Query:   81 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIENGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 506
            MGK  G+   RKL + RR Q+W D  YKKSHLG   K  PF G+SHAKGIVLEKIG+EAKQPNSAIRKC RVQLI+NGKKI AFVPNDGCLNYIEENDEVL+AGFGR GHAVGDIPGVRFK+VKV+ VSL ALF  KKE+PRS
Sbjct:    1 MGKPSGLRCARKLXNRRRDQKWHDXXYKKSHLGTALKANPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEENDEVLVAGFGRSGHAVGDIPGVRFKIVKVANVSLHALFTGKKERPRS 143          
BLAST of CK933014 vs. ExPASy Swiss-Prot
Match: RS23_SCHPO (40S ribosomal protein S23 OS=Schizosaccharomyces pombe GN=rps23a PE=2 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 2.249e-56
Identity = 105/143 (73.43%), Postives = 122/143 (85.31%), Query Frame = 3
Query:   81 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIENGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 506
            MGK  G+ A RKL++HRR +RWAD  YKK  LG  +K  PF GSSHAKGIV+EKIG+EAKQPNSAIRKC RVQLI+NGKK+ AFVP+DGCLN+++ENDEVL++GFGRKG A GDIPGVRFKVVKV+GV L ALF EKKEKPR+
Sbjct:    1 MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEKPRA 143          
BLAST of CK933014 vs. ExPASy Swiss-Prot
Match: RS12_TETTH (40S ribosomal protein S12 OS=Tetrahymena thermophila PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.040e-53
Identity = 99/139 (71.22%), Postives = 115/139 (82.73%), Query Frame = 3
Query:   81 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIENGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 497
            +GK RG+ AGRKL  HR+ QRWAD  + K  LG+ W+ PF G+SHAKG+V EKIGIE+KQPNSA+RKC RV L +N KKIAAFVP DGCLN++ ENDEVL+AG GR+GHAVGDIPGVRFKVV V G+SLLALFK KKEK
Sbjct:    3 VGKPRGIRAGRKLARHRKDQRWADNDFNKRLLGSRWRNPFMGASHAKGLVTEKIGIESKQPNSAVRKCVRVLLRKNSKKIAAFVPMDGCLNFLAENDEVLVAGLGRQGHAVGDIPGVRFKVVCVKGISLLALFKGKKEK 141          
BLAST of CK933014 vs. ExPASy Swiss-Prot
Match: RS23_DICDI (40S ribosomal protein S23 OS=Dictyostelium discoideum GN=rps23 PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.971e-52
Identity = 98/141 (69.50%), Postives = 116/141 (82.27%), Query Frame = 3
Query:   81 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIENGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 500
            MGK  G+   RKL++HRR QRW DK YKK+H G   K  PF G+SHA GIV+ ++GIEAKQPNSAIRKC RVQL +NGKKI AFVPNDGCLNYI+END+VL+AG GR GH+VGDIPGVRFKVVKVS VSL+A+++  K+KP
Sbjct:    1 MGKPNGLKTARKLRNHRRVQRWNDKLYKKAHFGTALKANPFGGASHASGIVVSRLGIEAKQPNSAIRKCVRVQLKKNGKKITAFVPNDGCLNYIQENDKVLVAGLGRSGHSVGDIPGVRFKVVKVSSVSLIAIYRGIKDKP 141          
BLAST of CK933014 vs. ExPASy Swiss-Prot
Match: RS12_CENSY (30S ribosomal protein S12P OS=Cenarchaeum symbiosum GN=rps12p PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.122e-39
Identity = 83/138 (60.14%), Postives = 104/138 (75.36%), Query Frame = 3
Query:   96 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIENGKKIAAFVPNDGCLNYIEENDEVLIAGFG-RKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 503
            G+ AGR LK+ ++RQRW+   YK+  LG + K  P  GS  A+GIVLEK+G+EAKQPNSA+RKC RVQLI+NGK I AF+P DG +N+I+E+DEV + G G  +G A+GDIPGVRFKV KV+G SL  L   KKEKPR
Sbjct:    7 GLFAGRVLKAKKKRQRWSISRYKRRELGLDRKANPMGGSPQARGIVLEKVGVEAKQPNSAVRKCVRVQLIKNGKSITAFLPRDGAMNFIDEHDEVHVEGMGATQGGAMGDIPGVRFKVFKVNGTSLHELVIGKKEKPR 144          
The following BLAST results are available for this feature:
BLAST of CK933014 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS23_YEAST4.100e-5876.7640S ribosomal protein S23 OS=Saccharomyces cerevis... [more]
RS23_SACCA4.100e-5876.7640S ribosomal protein S23 OS=Saccharomyces castell... [more]
RS23_SACBA4.100e-5876.7640S ribosomal protein S23 OS=Saccharomyces bayanus... [more]
RS23_CANGA4.100e-5876.7640S ribosomal protein S23 OS=Candida glabrata GN=R... [more]
RS23_GILMI7.731e-5773.4340S ribosomal protein S23 OS=Gillichthys mirabilis... [more]
RS23_CIOIN7.731e-5776.2240S ribosomal protein S23 OS=Ciona intestinalis GN... [more]
RS23_SCHPO2.249e-5673.4340S ribosomal protein S23 OS=Schizosaccharomyces p... [more]
RS12_TETTH3.040e-5371.2240S ribosomal protein S12 OS=Tetrahymena thermophi... [more]
RS23_DICDI1.971e-5269.5040S ribosomal protein S23 OS=Dictyostelium discoid... [more]
RS12_CENSY1.122e-3960.1430S ribosomal protein S12P OS=Cenarchaeum symbiosu... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004348_G01 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIF_G01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933014 ID=CK933014; Name=CK933014; organism=Citrus sinensis; type=EST; length=699bp
GGGGACTCGCGGCGTCCTCTTGCAACTCTCAAGCTCCAAAGTCGTTCGTT
ACAGTCAAAAATCCTCTTCGTAACGCCAACATGGGGAAGACACGTGGAAT
GGGAGCGGGTCGCAAGCTGAAGAGCCACCGCAGAAGACAAAGGTGGGCTG
ATAAGTCATACAAGAAATCCCACCTTGGCAATGAATGGAAGAAGCCATTT
GCTGGCTCTTCCCATGCAAAAGGCATTGTTCTTGAGAAAATCGGTATCGA
GGCAAAGCAGCCCAACTCCGCTATCAGAAAATGTGCTCGAGTTCAGCTGA
TCGAGAATGGAAAGAAGATTGCAGCTTTCGTACCAAACGATGGTTGTTTG
AACTACATTGAAGAAAATGACGAGGTACTTATTGCAGGATTTGGTCGAAA
GGGGCATGCTGTGGGAGATATTCCTGGTGTTAGATTTAAGGTTGTCAAGG
TTTCAGGCGTGTCTCTTCTGGCCCTCTTCAAGGAGAAGAAGGAGAAACCA
AGATCCTAAACTCCTGATTCAAGATACTTCACCATGTTTTCTTTTTTTAG
CACTTTATTTTCGTTAATCCCCGTTGATTACTGTTTTCCTTTATCATGTA
CTGCTGTTGAGAGAACTTTTTGGTTTTTTTCCCTCTGTTGAGACTATTAG
TAAATTAGTATCTGTCTCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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